Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

23766322 .. 23766789

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G020790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAACATGTGTTCCAAGTGCCACAAAGACTCGATGAAACAAGAGCAGACTAAGCTTGCTGCATCATCCATTGGAAATACTGTCAATGGAAAATCAAAGGAATATATTGTTTCTGCTAATGTGGATGTTCGAGCTAATTCAGTGGACCCAAAAACTATTTTTATGAAATCCATCTTTTCTTGTAGGTCGAAGCAGTATGATGTCTCTGACCCGCAACCATCCTCCTTTACTTTTGGGACATGCCAGAATAACGAGGAAGCGAAGCAGCCGGAGGGCCCGAAACAGTGCACTAGCTACAACAAGTGGGTTGGTTTGACAAGGTTTAACTGTCGTTGTGGTCACCTCTTTTGTACAGTACATCGTTATTTGGAGAAACATGATTGCTCTTATGATCATCGTACTGCTAGTCGTGAGGCCATTTCTAAAGCCAATCCTATTGTCAAAGCTGAGAAGCTTGATAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

9.05

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	101 - 132	5.1e-07	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AfaI	GTAC	3 cut(s)	352, 357, 400
AflIII	ACRYGT	1 cut(s)	6
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	55, 134, 294, 446, 454
AluI	AGCT	5 cut(s)	55, 134, 294, 446, 454
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	208
Alw44I	GTGCAC	1 cut(s)	286
AoxI	GGCC	2 cut(s)	274, 414
ApaI	GGGCCC	1 cut(s)	278
ApaLI	GTGCAC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	59, 265
AspS9I	GGNCC	3 cut(s)	145, 274, 275
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	2 cut(s)	278, 290
BanII	GRGCYC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	46, 277
BccI	CCATC	2 cut(s)	179, 226
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	2 cut(s)	291, 405
BisI	GCNGC	2 cut(s)	60, 266
BlsI	GCNGC	2 cut(s)	61, 267
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	145, 274, 275
BmiI	GGNNCC	2 cut(s)	147, 276
BmsI	GCATC	1 cut(s)	71
BseGI	GGATG	3 cut(s)	65, 130, 218
BseMII	CTCAG	1 cut(s)	438
BseSI	GKGCMC	2 cut(s)	278, 290
BseXI	GCAGC	2 cut(s)	46, 277
BshFI	GGCC	2 cut(s)	276, 416
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	276, 416
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	278, 290
Bsp1407I	TGTACA	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	2 cut(s)	276, 416
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	147, 276
BsrGI	TGTACA	1 cut(s)	350
BssMI	GATC	1 cut(s)	391
Bst4CI	ACNGT	4 cut(s)	82, 285, 329, 355
BstAUI	TGTACA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	51, 447
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	65, 130, 218
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNSI	RCATGY	2 cut(s)	10, 243
BstPI	GGTNACC	1 cut(s)	338
BstSLI	GKGCMC	2 cut(s)	278, 290
BstV1I	GCAGC	2 cut(s)	46, 277
BsuRI	GGCC	2 cut(s)	276, 416
BtsCI	GGATG	3 cut(s)	65, 130, 218
BtsIMutI	CAGTG	2 cut(s)	147, 290
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	3 cut(s)	145, 274, 275
Csp6I	GTAC	3 cut(s)	351, 356, 399
CviAII	CATG	3 cut(s)	7, 240, 377
CviJI	RGCY	9 cut(s)	55, 134, 268, 276, 294, 416, 428, 446, 454
CviKI_1	RGCY	9 cut(s)	55, 134, 268, 276, 294, 416, 428, 446, 454
CviQI	GTAC	3 cut(s)	351, 356, 399
DdeI	CTNAG	2 cut(s)	51, 447
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	3 cut(s)	10, 243, 380
FaiI	YATR	7 cut(s)	8, 105, 164, 198, 241, 378, 390
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	3 cut(s)	6, 239, 376
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	60, 266
FokI	GGATG	3 cut(s)	52, 137, 205
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	2 cut(s)	60, 266
FspBI	CTAG	2 cut(s)	291, 405
GluI	GCNGC	2 cut(s)	60, 266
HaeIII	GGCC	2 cut(s)	276, 416
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	3 cut(s)	10, 243, 380
HindIII	AAGCTT	2 cut(s)	53, 452
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	145, 288
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	145, 288
HpyCH4III	ACNGT	4 cut(s)	82, 285, 329, 355
HpyCH4V	TGCA	2 cut(s)	62, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	51, 447
Hsp92II	CATG	3 cut(s)	10, 243, 380
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	391
LpnPI	CCDG	2 cut(s)	257, 282
Lsp1109I	GCAGC	2 cut(s)	46, 277
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	2 cut(s)	291, 405
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	278, 290
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	5 cut(s)	232, 247, 265, 353, 406
MseI	TTAA	1 cut(s)	324
MspI	CCGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	3 cut(s)	10, 243, 380
NlaIV	GGNNCC	2 cut(s)	147, 276
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	2 cut(s)	10, 243
PciI	ACATGT	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	61, 267
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	6
PspEI	GGTNACC	1 cut(s)	338
PspN4I	GGNNCC	2 cut(s)	147, 276
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	3 cut(s)	145, 274, 275
RsaI	GTAC	3 cut(s)	352, 357, 400
RsaNI	GTAC	3 cut(s)	351, 356, 399
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	60, 266
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	3 cut(s)	145, 274, 275
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	278, 290
SetI	ASST	8 cut(s)	57, 136, 188, 296, 323, 345, 448, 456
SfaNI	GCATC	1 cut(s)	71
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	291, 405
TaaI	ACNGT	4 cut(s)	82, 285, 329, 355
TaqI	TCGA	3 cut(s)	32, 130, 188
TasI	AATT	1 cut(s)	136
TatI	WGTACW	2 cut(s)	350, 355
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	147, 290
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	59, 265
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	3 cut(s)	17, 50, 179
TspRI	CASTG	2 cut(s)	147, 290
VneI	GTGCAC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	145
XceI	RCATGY	2 cut(s)	10, 243
XspI	CTAG	2 cut(s)	291, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.