RLG00000030750

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000730
Physical Location & Seq
Forward (+)
66888463 .. 66888969
507 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030750

Sequence Viewer

Length: 507 bp
ATGGAGCACAACAAGACAGGATACCAAGCACTTCCAGAAGCTCCGAAACTTTGTATCAATAACTGTGGATTCTTTGGAAGTGCAGCAACCATGAACTTGTGTTCCAAATGCCACAAGGACTTGGTATTGAAGCAAGAACAAGCCAAAGTCCCTGCAGTGTCCATTGAAAGTGCTGTGAATGCCAATCCCAATAACTGGGGAAATGAACCTGCTGTGGCTTTAGATGTACAAGCTGGTTCAGCATATTTGCCTCTTATCTCAGCTGAGGCATCCAGTACTCCGCCTCCAAACAATGAGGATAAGGTGAAAGCGACTCCAACCCGGTGCAACACTTGTAGGAAACGTGTTGGTCTCACTGGGTTCAATTGCCGTTGTGGACATATCTTCTGTGCAGTTCATCGCTACTCTGATAAACACGACTGTCCATATCACTATCGAGCTGTTATGCATGATGCTATAACAAAAGTCAACCCTGTTGTCAAGGCTGAAAAGCTGGATAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

169

Amino Acids

18.34

Weight (kDa)

8.67

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 17 - 39 1.9e-11 A20-like zinc finger
zf-AN1 PF01428 109 - 145 2.6e-08 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 195
AciI CCGC 1 cut(s) 281
AfaI GTAC 2 cut(s) 228, 277
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 3 cut(s) 130, 167, 364
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 5 cut(s) 41, 233, 263, 440, 493
AluI AGCT 5 cut(s) 41, 233, 263, 440, 493
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 354
BciVI GTATCC 1 cut(s) 14
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 217
BfuI GTATCC 1 cut(s) 14
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 2 cut(s) 205, 366
BmsI GCATC 2 cut(s) 278, 442
BmuI ACTGGG 2 cut(s) 205, 366
Bpu10I CCTNAGC 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 3 cut(s) 200, 273, 361
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 255, 273
BseNI ACTGG 3 cut(s) 200, 273, 361
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 2 cut(s) 102, 411
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 184
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 226
BspACI CCGC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 256, 272
BspMAI CTGCAG 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 356
BsrGI TGTACA 1 cut(s) 226
BsrI ACTGG 3 cut(s) 200, 273, 361
Bst4CI ACNGT 2 cut(s) 65, 422
BstAUI TGTACA 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 259, 264
BstF5I GGATG 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 356
BstMWI GCNNNNNNNGC 2 cut(s) 179, 239
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 95
BsuI GTATCC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 383
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 354
BveI ACCTGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 227, 276
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 2 cut(s) 91, 449
CviJI RGCY 8 cut(s) 41, 143, 218, 233, 263, 440, 485, 493
CviKI_1 RGCY 8 cut(s) 41, 143, 218, 233, 263, 440, 485, 493
CviQI GTAC 2 cut(s) 227, 276
DdeI CTNAG 2 cut(s) 259, 264
EciI GGCGGA 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 450
FaeI CATG 2 cut(s) 94, 452
FaiI YATR 8 cut(s) 92, 244, 381, 427, 446, 450, 458, 505
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 90, 448
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
HapII CCGG 1 cut(s) 322
Hin1II CATG 2 cut(s) 94, 452
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 2 cut(s) 69, 313
HpaII CCGG 1 cut(s) 322
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 377, 469
Hpy188I TCNGA 2 cut(s) 45, 409
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 377, 469
HpyCH4III ACNGT 2 cut(s) 65, 422
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 5 cut(s) 83, 155, 327, 392, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 239
HpyF3I CTNAG 2 cut(s) 259, 264
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 2 cut(s) 94, 452
LmnI GCTCC 2 cut(s) 4, 46
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 2 cut(s) 278, 442
MaeII ACGT 1 cut(s) 343
MboII GAAGA 1 cut(s) 376
MfeI CAATTG 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 364
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 4 cut(s) 259, 261, 289, 294
Mph1103I ATGCAT 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 179, 239
NciI CCSGG 1 cut(s) 322
NlaIII CATG 2 cut(s) 94, 452
NsiI ATGCAT 1 cut(s) 450
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 69
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PstI CTGCAG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 228, 277
RsaNI GTAC 2 cut(s) 227, 276
SatI GCNGC 1 cut(s) 84
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 1 cut(s) 9
SetI ASST 8 cut(s) 43, 211, 235, 265, 306, 346, 442, 495
SfaNI GCATC 2 cut(s) 278, 442
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 364
SsiI CCGC 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 65, 422
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 436
TasI AATT 1 cut(s) 364
TatI WGTACW 2 cut(s) 226, 275
TfiI GAWTC 1 cut(s) 69
TscAI CASTG 2 cut(s) 162, 361
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 107, 219, 386
TspRI CASTG 2 cut(s) 162, 361
Van91I CCANNNNNTGG 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.