Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

16830234 .. 16832578

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGACTCTCATGATGAATGCCAAGCTCCAGACTGCTCCATCCTTTGCATTAATAAATGTGGCTTCTTTGGAAGGGCTACTACAATGAATATGTGCTCCAAATGTTACAAGGACATGCTTTTAAAGCAGGAGCAGGCTGATCTGGCAGCAACATCCATTGGTAGCCTTGTGAATGGTAACGTAGGCATCAGACCTGTTGTTGCAACTGCTGTCAATGTGCAAGCTGGAGAAGTGGAGGCAGTAGCTGTGTCAACAGAACCATCAACTGGCTCATCCTCAAGCAAAGTTAGTGAGGAGGTGAAAGAAATAACGGGACCAAAGAGATGCACTAGTTGCCGAAAGCGTGTTGGTTTAACTGGGTTCAATTGCAAATGTGGAAACACCTTCTGTTCAACTCATCGTTATTCTGACAAACATGACTGCCCTTTCGATTATAGGACTGCTGGTCAGGATGCTATTGCTAAAGCCAATCCTGTTGTCAAGGCAGAGAAACTTGATAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

169

Amino Acids

18.0

Weight (kDa)

7.95

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	14 - 37	1.8e-10	A20-like zinc finger
zf-AN1	PF01428	109 - 145	3.3e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	364, 393
AhdI	GACNNNNNGTC	1 cut(s)	444
AhlI	ACTAGT	1 cut(s)	329
AluBI	AGCT	3 cut(s)	26, 224, 245
AluI	AGCT	3 cut(s)	26, 224, 245
Alw21I	GWGCWC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AseI	ATTAAT	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	47, 268
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	2 cut(s)	330, 505
BglII	AGATCT	1 cut(s)	501
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	314
BmeRI	GACNNNNNGTC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	3 cut(s)	195, 314, 442
BmuI	ACTGGG	1 cut(s)	366
BpmI	CTGGAG	2 cut(s)	12, 246
BpuEI	CTTGAG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	271, 361
BseGI	GGATG	4 cut(s)	39, 152, 272, 457
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseNI	ACTGG	2 cut(s)	271, 361
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	139, 501
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	271, 361
BssMI	GATC	2 cut(s)	139, 501
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	135, 222
BstF5I	GGATG	4 cut(s)	39, 152, 272, 457
BstKTI	GATC	2 cut(s)	142, 504
BstMBI	GATC	2 cut(s)	139, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 143, 333
BstNSI	RCATGY	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BtsCI	GGATG	4 cut(s)	39, 152, 272, 457
Cac8I	GCNNGC	2 cut(s)	135, 222
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	314
CviAII	CATG	3 cut(s)	11, 115, 416
CviJI	RGCY	9 cut(s)	26, 63, 77, 137, 165, 224, 245, 270, 467
CviKI_1	RGCY	9 cut(s)	26, 63, 77, 137, 165, 224, 245, 270, 467
DpnI	GATC	2 cut(s)	141, 503
DpnII	GATC	2 cut(s)	139, 501
DraI	TTTAAA	1 cut(s)	123
DriI	GACNNNNNGTC	1 cut(s)	444
Eam1105I	GACNNNNNGTC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	314
FaeI	CATG	3 cut(s)	14, 118, 419
FaiI	YATR	5 cut(s)	12, 92, 116, 417, 435
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	3 cut(s)	10, 114, 415
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	4 cut(s)	26, 139, 259, 464
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	2 cut(s)	330, 505
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	12, 246
Hin1II	CATG	3 cut(s)	14, 118, 419
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	191, 409
Hpy188III	TCNNGA	3 cut(s)	11, 29, 449
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	66, 394
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	48, 203, 220, 327, 369
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 143, 333
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	14, 118, 419
Kzo9I	GATC	2 cut(s)	139, 501
LmnI	GCTCC	4 cut(s)	31, 41, 101, 130
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	3 cut(s)	195, 314, 442
MaeI	CTAG	2 cut(s)	330, 505
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	104, 176
MalI	GATC	2 cut(s)	141, 503
MboI	GATC	2 cut(s)	139, 501
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	1 cut(s)	364
MnlI	CCTC	4 cut(s)	229, 286, 286, 289
MseI	TTAA	3 cut(s)	51, 122, 353
MunI	CAATTG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	124, 143, 333
NdeII	GATC	2 cut(s)	139, 501
NlaIII	CATG	3 cut(s)	14, 118, 419
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	118
PagI	TCATGA	1 cut(s)	10
PctI	GAATGC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	51, 122, 353
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	139, 501
Sau96I	GGNCC	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	7 cut(s)	28, 183, 196, 226, 247, 300, 386
SfaNI	GCATC	3 cut(s)	195, 314, 442
SinI	GGWCC	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	330, 505
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	429
TasI	AATT	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	51, 122, 353
Tru9I	TTAA	3 cut(s)	51, 122, 353
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	30, 101
Van91I	CCANNNNNTGG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	51
XceI	RCATGY	1 cut(s)	118
XspI	CTAG	2 cut(s)	330, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.