MD11G1029100.v1.1

Zinc finger A20 and AN1 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
2557273 .. 2559090
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1029100.v1.1.491

Sequence Viewer

Length: 519 bp
ATGGAGCACGAGGAGACTGGATGTCAAGCTGCCCCTGAAGGTCCTATTTTGTGCGTAAACAATTGTGGGTTTTTCGGAAGTGCGGCTACTATGAATATGTGTTCCAAGTGTCACAAGGACATGATGTTGAAACAGGAGCAGGCGAAGCTTGCTGCATCATCCTTTGGAAGCATTGTCAACGGAACATCAAGCATCAATGCAAATGAGCCTGTTATTGCTGCTCCTCCTGTGGACATTCAATCTCAGCCAGTAGCACCACAAACTATCAGCTCACAACCATCATTTTCCTTTGGTTCTGGGTCATCTGGTGAGCCAAAGCCAGAGGGCCCGAAACGATGCAGCAGTTGCAACAAGCGGGTTGGATTAACAGGGTTCAATTGTCGGTGTGGTCACCTCTTTTGCGCAGTACATCGTTATTCAGACAAACATGACTGTCCTTACGATTATCGCACTGCTGGACGGGATGCTATTGCGAAAGCCAACCCAGTAGTAAAAGCTGAGAAGCTCGATAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

18.3

Weight (kDa)

8.0

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 16 - 39 1.5e-12 A20-like zinc finger
zf-AN1 PF01428 113 - 149 4.3e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 403
AciI CCGC 2 cut(s) 83, 355
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 408
AgsI TTSAA 3 cut(s) 130, 239, 376
AhdI GACNNNNNGTC 1 cut(s) 21
AluBI AGCT 5 cut(s) 29, 148, 270, 497, 505
AluI AGCT 5 cut(s) 29, 148, 270, 497, 505
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 8
AoxI GGCC 1 cut(s) 325
ApaI GGGCCC 1 cut(s) 329
ApeKI GCWGC 4 cut(s) 29, 152, 218, 339
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 3 cut(s) 41, 325, 326
AsuHPI GGTGA 2 cut(s) 320, 383
AvaII GGWCC 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 329
BarI GAAGNNNNNNTAC 2 cut(s) 70, 102
BauI CACGAG 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 4 cut(s) 16, 139, 205, 351
BccI CCATC 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 8
BisI GCNGC 5 cut(s) 30, 84, 153, 219, 340
BlsI GCNGC 5 cut(s) 31, 85, 154, 220, 341
Bme18I GGWCC 1 cut(s) 41
BmeRI GACNNNNNGTC 1 cut(s) 21
BmgT120I GGNCC 3 cut(s) 41, 325, 326
BmiI GGNNCC 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 4 cut(s) 164, 201, 326, 454
BmuI ACTGGG 1 cut(s) 479
Bse1I ACTGG 3 cut(s) 22, 248, 485
BseGI GGATG 3 cut(s) 26, 158, 469
BseMII CTCAG 2 cut(s) 257, 489
BseNI ACTGG 3 cut(s) 22, 248, 485
BseRI GAGGAG 2 cut(s) 26, 213
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 4 cut(s) 16, 139, 205, 351
BshFI GGCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 8
BsnI GGCC 1 cut(s) 327
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 2 cut(s) 9, 329
BspACI CCGC 2 cut(s) 83, 355
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 256, 490
BspLI GGNNCC 1 cut(s) 327
BsrI ACTGG 3 cut(s) 22, 248, 485
BssSI CACGAG 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 141, 150
BstDEI CTNAG 2 cut(s) 243, 498
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 3 cut(s) 26, 158, 469
BstHHI GCGC 1 cut(s) 404
BstMAI GTCTC 1 cut(s) 8
BstMWI GCNNNNNNNGC 3 cut(s) 145, 149, 345
BstPI GGTNACC 1 cut(s) 389
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 4 cut(s) 16, 139, 205, 351
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 3 cut(s) 26, 158, 469
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 141, 150
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 3 cut(s) 41, 325, 326
Csp6I GTAC 1 cut(s) 407
CviAII CATG 2 cut(s) 121, 428
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 243, 498
DriI GACNNNNNGTC 1 cut(s) 21
Eam1105I GACNNNNNGTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 389
EcoO109I RGGNCCY 2 cut(s) 41, 325
EcoO65I GGTNACC 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 2 cut(s) 124, 431
FaiI YATR 4 cut(s) 92, 98, 122, 429
FatI CATG 2 cut(s) 120, 427
FauI CCCGC 1 cut(s) 348
Fnu4HI GCNGC 5 cut(s) 30, 84, 153, 219, 340
FokI GGATG 3 cut(s) 33, 145, 476
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 5 cut(s) 30, 84, 153, 219, 340
FspI TGCGCA 1 cut(s) 403
GlaI GCGC 1 cut(s) 403
GluI GCNGC 5 cut(s) 30, 84, 153, 219, 340
HaeIII GGCC 1 cut(s) 327
HhaI GCGC 1 cut(s) 404
Hin1II CATG 2 cut(s) 124, 431
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 146
HphI GGTGA 2 cut(s) 320, 383
Hpy166II GTNNAC 3 cut(s) 58, 178, 232
Hpy188I TCNGA 2 cut(s) 77, 421
Hpy8I GTNNAC 3 cut(s) 58, 178, 232
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 155, 200, 339, 348
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 149, 345
HpyF3I CTNAG 2 cut(s) 243, 498
Hsp92II CATG 2 cut(s) 124, 431
HspAI GCGC 1 cut(s) 402
LmnI GCTCC 3 cut(s) 4, 136, 226
Lsp1109I GCAGC 4 cut(s) 16, 139, 205, 351
LweI GCATC 4 cut(s) 164, 201, 326, 454
MaeIII GTNAC 2 cut(s) 110, 389
MfeI CAATTG 2 cut(s) 61, 376
MhlI GDGCHC 2 cut(s) 9, 329
MluCI AATT 2 cut(s) 61, 376
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 4 cut(s) 4, 234, 316, 404
MseI TTAA 1 cut(s) 365
MunI CAATTG 2 cut(s) 61, 376
MwoI GCNNNNNNNGC 3 cut(s) 145, 149, 345
NlaIII CATG 2 cut(s) 124, 431
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 2 cut(s) 110, 389
NsbI TGCGCA 1 cut(s) 403
PkrI GCNGC 5 cut(s) 31, 85, 154, 220, 341
PpuMI RGGWCCY 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 41
PspEI GGTNACC 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 327
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 3 cut(s) 41, 325, 326
PspPPI RGGWCCY 1 cut(s) 41
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 5 cut(s) 30, 84, 153, 219, 340
Sau96I GGNCC 3 cut(s) 41, 325, 326
SduI GDGCHC 2 cut(s) 9, 329
SetI ASST 7 cut(s) 31, 43, 150, 272, 396, 499, 507
SfaNI GCATC 4 cut(s) 164, 201, 326, 454
SinI GGWCC 1 cut(s) 41
Sse9I AATT 2 cut(s) 61, 376
SsiI CCGC 2 cut(s) 83, 355
TaaI ACNGT 1 cut(s) 434
TaqI TCGA 1 cut(s) 507
TasI AATT 2 cut(s) 61, 376
TatI WGTACW 1 cut(s) 406
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 2 cut(s) 110, 389
TseI GCWGC 4 cut(s) 29, 152, 218, 339
Tsp45I GTSAC 2 cut(s) 110, 389
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.