Rmu_sc0001701.1_g000022

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001701.1
OG0000730
Physical Location & Seq
Reverse (-)
124323 .. 127154
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001701.1_g000022.1.cds

Sequence Viewer

Length: 558 bp
atggtgaatgcgatgctccgatctggtgcgctccgaaccgccctgcgaggtggctctctatcctctgctctgcccaagcggccattctcctgcaccgccggccacaaccatgcttataaggagcatatgaggatagtgaaggaggcatggcacttgtctactgttccctctagtgttgcgtgccgcgaagtggagcagaagagggttctggagttctgcaagtcatgcatagagcaagagaaggctcatggatacagtttttgtattacaatttggttgcatcagtatgatgtctctgacccgcaaccatcctcctttactttcgggacatgccagaataacgaggaagcgaagcagtcggagggcctgaaacagtgcactagctacaacaagtgggttgatttgacagggtttaactgtcgttgcggtcacctcttttgtacagtacattgttattcggagaaacatgattgctcttatgatcatcgtactactagtcgtaaggccatttctaaagccaatcctattgtcaaagctgagaagcttgataaaatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

185

Amino Acids

20.94

Weight (kDa)

8.81

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AccI GTMKAC 1 cut(s) 158
AccII CGCG 1 cut(s) 186
AciI CCGC 6 cut(s) 39, 79, 96, 184, 302, 426
AcoI YGGCCR 2 cut(s) 80, 100
AfaI GTAC 3 cut(s) 442, 447, 490
AfiI CCNNNNNNNGG 1 cut(s) 190
AhlI ACTAGT 1 cut(s) 494
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 3 cut(s) 384, 536, 544
AluI AGCT 3 cut(s) 384, 536, 544
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 1 cut(s) 298
Alw44I GTGCAC 1 cut(s) 376
AoxI GGCC 4 cut(s) 80, 100, 364, 504
ApaLI GTGCAC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 16, 422
BaeGI GKGCMC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 380
BccI CCATC 1 cut(s) 316
BciVI GTATCC 1 cut(s) 245
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 298
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 3 cut(s) 171, 381, 495
BfuI GTATCC 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 79
BisI GCNGC 2 cut(s) 80, 184
BlsI GCNGC 2 cut(s) 81, 185
BmgT120I GGNCC 1 cut(s) 364
BmsI GCATC 2 cut(s) 3, 289
BpmI CTGGAG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 98
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 528
BseSI GKGCMC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 4 cut(s) 82, 102, 366, 506
BsiHKAI GWGCWC 1 cut(s) 380
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 4 cut(s) 82, 102, 366, 506
Bsp1286I GDGCHC 1 cut(s) 380
Bsp1407I TGTACA 1 cut(s) 440
Bsp143I GATC 2 cut(s) 20, 481
BspACI CCGC 6 cut(s) 39, 79, 96, 184, 302, 426
BspANI GGCC 4 cut(s) 82, 102, 366, 506
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 2 cut(s) 20, 481
Bst4CI ACNGT 5 cut(s) 163, 257, 375, 419, 445
Bst6I CTCTTC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 100, 181
BstDEI CTNAG 1 cut(s) 537
BstEII GGTNACC 1 cut(s) 428
BstF5I GGATG 1 cut(s) 308
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 23, 484
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 2 cut(s) 20, 481
BstMWI GCNNNNNNNGC 3 cut(s) 79, 99, 225
BstNSI RCATGY 1 cut(s) 333
BstPI GGTNACC 1 cut(s) 428
BstSLI GKGCMC 1 cut(s) 380
BstUI CGCG 1 cut(s) 186
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 4 cut(s) 82, 102, 366, 506
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 100, 181
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 364
Csp6I GTAC 3 cut(s) 441, 446, 489
CviAII CATG 6 cut(s) 110, 147, 225, 248, 330, 467
CviQI GTAC 3 cut(s) 441, 446, 489
DdeI CTNAG 1 cut(s) 537
DpnI GATC 2 cut(s) 22, 483
DpnII GATC 2 cut(s) 20, 481
EaeI YGGCCR 2 cut(s) 80, 100
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco91I GGTNACC 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 364
EcoO65I GGTNACC 1 cut(s) 428
EcoT22I ATGCAT 1 cut(s) 230
FaeI CATG 6 cut(s) 113, 150, 228, 251, 333, 470
FaqI GGGAC 1 cut(s) 340
FatI CATG 6 cut(s) 109, 146, 224, 247, 329, 466
FauI CCCGC 1 cut(s) 309
FauNDI CATATG 1 cut(s) 126
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 80, 184
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 80, 184
FspBI CTAG 3 cut(s) 171, 381, 495
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 80, 184
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 4 cut(s) 82, 102, 366, 506
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 31
Hin1II CATG 6 cut(s) 113, 150, 228, 251, 333, 470
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 542
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 16, 422
Hpy166II GTNNAC 2 cut(s) 159, 378
Hpy188I TCNGA 5 cut(s) 20, 35, 298, 361, 460
Hpy188III TCNNGA 2 cut(s) 209, 325
Hpy8I GTNNAC 2 cut(s) 159, 378
HpyAV CCTTC 2 cut(s) 133, 235
HpyCH4III ACNGT 5 cut(s) 163, 257, 375, 419, 445
HpyCH4V TGCA 5 cut(s) 93, 219, 228, 280, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 99, 225
HpyF3I CTNAG 1 cut(s) 537
Hsp92II CATG 6 cut(s) 113, 150, 228, 251, 333, 470
HspAI GCGC 1 cut(s) 29
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 20, 481
LmnI GCTCC 4 cut(s) 21, 36, 121, 193
LpnPI CCDG 8 cut(s) 9, 56, 103, 112, 194, 347, 380, 393
LweI GCATC 2 cut(s) 3, 289
MaeI CTAG 3 cut(s) 171, 381, 495
MaeIII GTNAC 1 cut(s) 428
MalI GATC 2 cut(s) 22, 483
MboI GATC 2 cut(s) 20, 481
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 230
MroNI GCCGGC 1 cut(s) 98
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 2 cut(s) 108, 285
MspI CCGG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 13
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 79, 99, 225
NaeI GCCGGC 1 cut(s) 100
NdeI CATATG 1 cut(s) 126
NdeII GATC 2 cut(s) 20, 481
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 6 cut(s) 113, 150, 228, 251, 333, 470
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 1 cut(s) 333
PctI GAATGC 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 81, 185
PsiI TTATAA 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 428
PspPI GGNCC 1 cut(s) 364
RsaI GTAC 3 cut(s) 442, 447, 490
RsaNI GTAC 3 cut(s) 441, 446, 489
RseI CAYNNNNRTG 2 cut(s) 108, 285
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 2 cut(s) 80, 184
Sau3AI GATC 2 cut(s) 20, 481
Sau96I GGNCC 1 cut(s) 364
SduI GDGCHC 1 cut(s) 380
SetI ASST 5 cut(s) 52, 386, 435, 538, 546
SfaNI GCATC 2 cut(s) 3, 289
SmiMI CAYNNNNRTG 2 cut(s) 108, 285
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 1 cut(s) 270
SsiI CCGC 6 cut(s) 39, 79, 96, 184, 302, 426
SspMI CTAG 3 cut(s) 171, 381, 495
TaaI ACNGT 5 cut(s) 163, 257, 375, 419, 445
TasI AATT 1 cut(s) 270
TatI WGTACW 2 cut(s) 440, 445
TauI GCSGC 2 cut(s) 82, 186
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 380
TseFI GTSAC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 428
TspRI CASTG 1 cut(s) 380
VneI GTGCAC 1 cut(s) 376
XceI RCATGY 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 3 cut(s) 171, 381, 495
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.