AT1G51200

zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000730
Physical Location & Seq
Forward (+)
18984281 .. 18986653
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51200.1

Sequence Viewer

Length: 522 bp
ATGGACCACGACAAGACAGGATGCCAAAGCCCACCTGAAGGTCCCAAGCTATGTACTAACAACTGCGGTTTCTTTGGAAGCGCTGCCACAATGAACATGTGTTCTAAGTGTCACAAGGATATGTTGTTCCAACAGGAGCAGGGCGCTAAGTTTGCATCTGCAGTGTCTGGAACATCGTCATCCAGCAACATCATAAAGGAAACCTTTACCGCTGCGTTGGTCGATATTGAAACCAAATCCGTTGAGCCGATGACTGTTTCTGTACAGCCATCCTCTGTCCAAGTCGTTGCAGAGGTAGTAGCACCAGAAGAAGCTGCGAAACCAAAGGGACCAAGCCGATGTACTACTTGCAATAAGCGGGTTGGCCTGACTGGATTCAAATGTCGCTGTGGGAGCCTCTTCTGCGGAACACACCGCTATGCAGACGTACATGACTGCTCCTTCAATTACCATGCTGCTGCGCAAGAGGCGATAGCTAAGGCAAACCCGGTTGTGAAAGCAGAGAAGCTTGACAAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

173

Amino Acids

18.43

Weight (kDa)

7.99

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 17 - 39 5e-11 A20-like zinc finger
zf-AN1 PF01428 114 - 150 5.8e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 462
AciI CCGC 5 cut(s) 66, 210, 358, 405, 415
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 4 cut(s) 55, 264, 343, 429
AfeI AGCGCT 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 3 cut(s) 230, 379, 445
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 4 cut(s) 49, 314, 476, 508
AluI AGCT 4 cut(s) 49, 314, 476, 508
AlwNI CAGNNNCTG 1 cut(s) 167
Aor51HI AGCGCT 1 cut(s) 82
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 5 cut(s) 83, 212, 314, 455, 458
AspLEI GCGC 3 cut(s) 83, 146, 463
AspS9I GGNCC 3 cut(s) 4, 41, 329
AsuC2I CCSGG 1 cut(s) 488
AvaII GGWCC 3 cut(s) 4, 41, 329
BbvI GCAGC 5 cut(s) 70, 199, 301, 442, 445
BccI CCATC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 2 cut(s) 84, 147
BisI GCNGC 5 cut(s) 84, 213, 315, 456, 459
BlsI GCNGC 5 cut(s) 85, 214, 316, 457, 460
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 3 cut(s) 4, 41, 329
BmgT120I GGNCC 3 cut(s) 4, 41, 329
BmiI GGNNCC 3 cut(s) 43, 330, 395
BmrFI CCNGG 1 cut(s) 488
BmsI GCATC 2 cut(s) 11, 164
Bpu10I CCTNAGC 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 488
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 26, 179, 269
BseLI CCNNNNNNNGG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 376
BseXI GCAGC 5 cut(s) 70, 199, 301, 442, 445
BshFI GGCC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 2 cut(s) 27, 342
BslI CCNNNNNNNGG 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 27, 342
BsnI GGCC 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 262
BspACI CCGC 5 cut(s) 66, 210, 358, 405, 415
BspANI GGCC 1 cut(s) 366
BspLI GGNNCC 3 cut(s) 43, 330, 395
BspMAI CTGCAG 1 cut(s) 163
BsrGI TGTACA 1 cut(s) 262
BsrI ACTGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 404
BstAUI TGTACA 1 cut(s) 262
BstDEI CTNAG 3 cut(s) 105, 147, 477
BstF5I GGATG 3 cut(s) 26, 179, 269
BstH2I RGCGCY 2 cut(s) 84, 147
BstHHI GCGC 3 cut(s) 83, 146, 463
BstMWI GCNNNNNNNGC 4 cut(s) 152, 393, 402, 467
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 5 cut(s) 70, 199, 301, 442, 445
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 3 cut(s) 26, 179, 269
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 3 cut(s) 83, 146, 463
Cfr13I GGNCC 3 cut(s) 4, 41, 329
Csp6I GTAC 4 cut(s) 54, 263, 342, 428
CviAII CATG 3 cut(s) 97, 431, 452
CviQI GTAC 4 cut(s) 54, 263, 342, 428
DdeI CTNAG 3 cut(s) 105, 147, 477
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Eco47I GGWCC 3 cut(s) 4, 41, 329
Eco47III AGCGCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 41
FaeI CATG 3 cut(s) 100, 434, 455
FaiI YATR 7 cut(s) 52, 98, 122, 194, 420, 432, 453
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 2 cut(s) 27, 342
FatI CATG 3 cut(s) 96, 430, 451
FauI CCCGC 1 cut(s) 351
Fnu4HI GCNGC 5 cut(s) 84, 213, 315, 456, 459
FokI GGATG 3 cut(s) 33, 166, 256
Fsp4HI GCNGC 5 cut(s) 84, 213, 315, 456, 459
FspI TGCGCA 1 cut(s) 462
GlaI GCGC 3 cut(s) 82, 145, 462
GluI GCNGC 5 cut(s) 84, 213, 315, 456, 459
HaeII RGCGCY 2 cut(s) 84, 147
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 488
HhaI GCGC 3 cut(s) 83, 146, 463
Hin1II CATG 3 cut(s) 100, 434, 455
Hin6I GCGC 3 cut(s) 81, 144, 461
HinP1I GCGC 3 cut(s) 81, 144, 461
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 1 cut(s) 375
HpaII CCGG 1 cut(s) 488
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 32, 451
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 5 cut(s) 155, 161, 290, 351, 422
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 393, 402, 467
HpyF3I CTNAG 3 cut(s) 105, 147, 477
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 3 cut(s) 100, 434, 455
HspAI GCGC 3 cut(s) 81, 144, 461
LmnI GCTCC 3 cut(s) 136, 393, 443
Lsp1109I GCAGC 5 cut(s) 70, 199, 301, 442, 445
LweI GCATC 2 cut(s) 11, 164
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 110
MboII GAAGA 2 cut(s) 320, 391
MluCI AATT 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 4 cut(s) 283, 286, 407, 460
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 488
MwoI GCNNNNNNNGC 4 cut(s) 152, 393, 402, 467
NciI CCSGG 1 cut(s) 488
NlaIII CATG 3 cut(s) 100, 434, 455
NlaIV GGNNCC 3 cut(s) 43, 330, 395
NmuCI GTSAC 1 cut(s) 110
NsbI TGCGCA 1 cut(s) 462
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 5 cut(s) 85, 214, 316, 457, 460
PpuMI RGGWCCY 1 cut(s) 41
PscI ACATGT 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 41
PspN4I GGNNCC 3 cut(s) 43, 330, 395
PspPI GGNCC 3 cut(s) 4, 41, 329
PspPPI RGGWCCY 1 cut(s) 41
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 167
RsaI GTAC 4 cut(s) 55, 264, 343, 429
RsaNI GTAC 4 cut(s) 54, 263, 342, 428
RseI CAYNNNNRTG 1 cut(s) 417
SatI GCNGC 5 cut(s) 84, 213, 315, 456, 459
Sau96I GGNCC 3 cut(s) 4, 41, 329
ScrFI CCNGG 1 cut(s) 488
SetI ASST 9 cut(s) 37, 43, 51, 206, 297, 316, 429, 478, 510
SfaNI GCATC 2 cut(s) 11, 164
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 3 cut(s) 4, 41, 329
SmiMI CAYNNNNRTG 1 cut(s) 417
Sse9I AATT 1 cut(s) 445
SsiI CCGC 5 cut(s) 66, 210, 358, 405, 415
StyD4I CCNGG 1 cut(s) 486
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 429
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 445
TatI WGTACW 3 cut(s) 53, 262, 341
TfiI GAWTC 1 cut(s) 375
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 5 cut(s) 83, 212, 314, 455, 458
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 3 cut(s) 4, 41, 329
XceI RCATGY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.