Rmu_sc0013573.1_g000001

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013573.1
OG0000730
Physical Location & Seq
Reverse (-)
1952 .. 2467
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013573.1_g000001.1.cds

Sequence Viewer

Length: 516 bp
atggactctcacgatgaaactggatgccaagctccagaccgccccatcctttgcattaataactgtggcttcttcggaagggcagctacaatgaatatgtgttccaaatgttacaaggacatgcttctaaagcaggagcaggccgatctggcagcaacatccattggtagccttgtgaatggcaacaatagtggcattggccctgttgttgctaatgctgtcgatgtgcaagctggacaagttgaggcggtggttatttcaacagagccatcttgtggctcatcctcaagcaaagttactgatgaggtgaaagaaatagctggaccaaagagatgcactacttgccgaaagcgtgttggtctaactgggttcaattgcaaatgtggaaataccttctgttcaactcatcgctattctgacaaacatgactgcccttttgattataggactgctggtcgggatgctattgctaaagccaatcctgttgtcaaggcagagaaacttgataagatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

171

Amino Acids

18.25

Weight (kDa)

7.95

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AciI CCGC 2 cut(s) 40, 248
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 261, 373, 402
AhdI GACNNNNNGTC 1 cut(s) 453
AluBI AGCT 4 cut(s) 32, 86, 233, 320
AluI AGCT 4 cut(s) 32, 86, 233, 320
AoxI GGCC 2 cut(s) 141, 199
ApeKI GCWGC 2 cut(s) 83, 152
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AseI ATTAAT 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 200, 323
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 70, 102
BbvI GCAGC 2 cut(s) 95, 164
BccI CCATC 2 cut(s) 53, 277
BfaI CTAG 1 cut(s) 514
BglI GCCNNNNNGGC 1 cut(s) 149
BglII AGATCT 1 cut(s) 510
BisI GCNGC 2 cut(s) 84, 153
BlsI GCNGC 2 cut(s) 85, 154
Bme18I GGWCC 1 cut(s) 323
BmeRI GACNNNNNGTC 1 cut(s) 453
BmgT120I GGNCC 2 cut(s) 200, 323
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 14, 323, 451
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 25, 370
BseGI GGATG 5 cut(s) 29, 45, 158, 281, 466
BseLI CCNNNNNNNGG 1 cut(s) 275
BseNI ACTGG 2 cut(s) 25, 370
BseXI GCAGC 2 cut(s) 95, 164
BshFI GGCC 2 cut(s) 143, 201
BslI CCNNNNNNNGG 1 cut(s) 275
BsnI GGCC 2 cut(s) 143, 201
Bsp143I GATC 2 cut(s) 145, 510
BspACI CCGC 2 cut(s) 40, 248
BspANI GGCC 2 cut(s) 143, 201
BsrI ACTGG 2 cut(s) 25, 370
BssMI GATC 2 cut(s) 145, 510
Bst4CI ACNGT 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 141, 231
BstF5I GGATG 5 cut(s) 29, 45, 158, 281, 466
BstKTI GATC 2 cut(s) 148, 513
BstMBI GATC 2 cut(s) 145, 510
BstMWI GCNNNNNNNGC 3 cut(s) 130, 149, 342
BstNSI RCATGY 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 95, 164
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
BsuRI GGCC 2 cut(s) 143, 201
BtgZI GCGATG 1 cut(s) 392
BtsCI GGATG 5 cut(s) 29, 45, 158, 281, 466
Cac8I GCNNGC 2 cut(s) 141, 231
Cfr13I GGNCC 2 cut(s) 200, 323
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 2 cut(s) 121, 425
DpnI GATC 2 cut(s) 147, 512
DpnII GATC 2 cut(s) 145, 510
DriI GACNNNNNGTC 1 cut(s) 453
Eam1105I GACNNNNNGTC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 323
FaeI CATG 2 cut(s) 124, 428
FaiI YATR 4 cut(s) 98, 122, 426, 444
FatI CATG 2 cut(s) 120, 424
Fnu4HI GCNGC 2 cut(s) 84, 153
FokI GGATG 5 cut(s) 32, 36, 145, 268, 473
Fsp4HI GCNGC 2 cut(s) 84, 153
FspBI CTAG 1 cut(s) 514
GluI GCNGC 2 cut(s) 84, 153
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 143, 201
Hin1II CATG 2 cut(s) 124, 428
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 77, 418
Hpy188III TCNNGA 3 cut(s) 11, 35, 458
HpyAV CCTTC 2 cut(s) 72, 403
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 54, 229, 336, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 149, 342
Hsp92II CATG 2 cut(s) 124, 428
Kzo9I GATC 2 cut(s) 145, 510
LmnI GCTCC 2 cut(s) 37, 136
Lsp1109I GCAGC 2 cut(s) 95, 164
LweI GCATC 3 cut(s) 14, 323, 451
MaeI CTAG 1 cut(s) 514
MaeIII GTNAC 2 cut(s) 110, 295
MalI GATC 2 cut(s) 147, 512
MboI GATC 2 cut(s) 145, 510
MboII GAAGA 1 cut(s) 64
MfeI CAATTG 1 cut(s) 373
MflI RGATCY 1 cut(s) 510
MluCI AATT 1 cut(s) 373
MnlI CCTC 3 cut(s) 238, 295, 298
MseI TTAA 1 cut(s) 57
MunI CAATTG 1 cut(s) 373
MwoI GCNNNNNNNGC 3 cut(s) 130, 149, 342
NdeII GATC 2 cut(s) 145, 510
NlaIII CATG 2 cut(s) 124, 428
NspI RCATGY 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 85, 154
PshBI ATTAAT 1 cut(s) 57
PspPI GGNCC 2 cut(s) 200, 323
PsuI RGATCY 1 cut(s) 510
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 84, 153
Sau3AI GATC 2 cut(s) 145, 510
Sau96I GGNCC 2 cut(s) 200, 323
SetI ASST 6 cut(s) 34, 88, 235, 309, 322, 395
SfaNI GCATC 3 cut(s) 14, 323, 451
SinI GGWCC 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 1 cut(s) 373
SsiI CCGC 2 cut(s) 40, 248
SspMI CTAG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 373
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 2 cut(s) 83, 152
TspDTI ATGAA 2 cut(s) 30, 107
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 323
VspI ATTAAT 1 cut(s) 57
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.