AT3G21055

Photosystem II 5 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014238
Physical Location & Seq
Reverse (-)
7376432 .. 7377226
795 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21055.1

Sequence Viewer

Length: 312 bp
ATGGCATCGATGACCATGACCGCTACCTTCTTCCCGGCCGTCGCCAAGGTTCCCTCAGCCACCGGCGGACGAAGGCTCTCCGTAGTCAGAGCCTCCACGAGCGACAACACACCCAGCTTAGAAGTCAAGGAACAGAGCAGCACCACAATGAGGAGGGACCTCATGTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAGGTAGCCATGGCTGAAGAAGAAGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAATGCCTACGGCCAAGATCTGCCGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.03

Weight (kDa)

9.55

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51400 AT3G21055 AT3G21055
fragaria_vesca FvH4_3g28710
malus_domestica MD03G1173700.v1.1 MD11G1191900.v1.1
prunus_persica Prupe.4G250700_v2.0.a1
pyrus_communis pycom03g13130
rosa_chinensis RchiOBHm_Chr5g0052351
rosa_laevigata RLG00000034822
rosa_multiflora Rmu_sc0031963.1_g000001
rosa_rugosa Rorug05G0272600
rosa_samantha Rh5AG345100 Rh5BG356200 Rh5CG381500 Rh5DG371200
rosa_wichuraiana Rw5G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 21, 66, 185, 248, 304
AcoI YGGCCR 3 cut(s) 36, 249, 291
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 3 cut(s) 150, 236, 237
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 2 cut(s) 117, 179
AluI AGCT 2 cut(s) 117, 179
AoxI GGCC 3 cut(s) 36, 249, 291
ApeKI GCWGC 5 cut(s) 138, 173, 176, 179, 182
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 55
BbvI GCAGC 5 cut(s) 150, 160, 166, 188, 194
BceAI ACGGC 3 cut(s) 23, 186, 306
BcnI CCSGG 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 174, 180
BglII AGATCT 1 cut(s) 297
BisI GCNGC 7 cut(s) 139, 174, 177, 180, 183, 249, 304
BlsI GCNGC 7 cut(s) 140, 175, 178, 181, 184, 250, 305
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 51, 158
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 2 cut(s) 55, 201
BpuMI CCSGG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 45, 210
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 236, 237
Bse118I RCCGGY 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 45, 210
BseLI CCNNNNNNNGG 3 cut(s) 150, 236, 237
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 5 cut(s) 150, 160, 166, 188, 194
BseYI CCCAGC 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 3 cut(s) 38, 251, 293
BshVI ATCGAT 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 2 cut(s) 35, 63
BslFI GGGAC 2 cut(s) 170, 253
BslI CCNNNNNNNGG 3 cut(s) 150, 236, 237
BsmFI GGGAC 2 cut(s) 170, 253
BsnI GGCC 3 cut(s) 38, 251, 293
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 5 cut(s) 21, 66, 185, 248, 304
BspANI GGCC 3 cut(s) 38, 251, 293
BspCNI CTCAG 1 cut(s) 68
BspDI ATCGAT 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 51, 158
BspMAI CTGCAG 2 cut(s) 178, 184
BspQI GCTCTTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 45, 210
BssMI GATC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 97
BssT1I CCWWGG 2 cut(s) 45, 210
Bst2BI CACGAG 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 3 cut(s) 55, 118, 201
BstDSI CCRYGG 1 cut(s) 210
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 179, 182, 206
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 2 cut(s) 174, 180
BstV1I GCAGC 5 cut(s) 150, 160, 166, 188, 194
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BstZI CGGCCG 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 8
BsuRI GGCC 3 cut(s) 38, 251, 293
BsuTUI ATCGAT 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 8
CviAII CATG 3 cut(s) 16, 163, 211
DdeI CTNAG 3 cut(s) 55, 118, 201
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
EaeI YGGCCR 3 cut(s) 36, 249, 291
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 1 cut(s) 81
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 45, 210
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 157
Eco52I CGGCCG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 45, 210
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 45, 210
FaeI CATG 3 cut(s) 19, 166, 214
FaiI YATR 3 cut(s) 17, 164, 212
FaqI GGGAC 2 cut(s) 170, 253
FatI CATG 3 cut(s) 15, 162, 210
Fnu4HI GCNGC 7 cut(s) 139, 174, 177, 180, 183, 249, 304
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 7 cut(s) 139, 174, 177, 180, 183, 249, 304
GluI GCNGC 7 cut(s) 139, 174, 177, 180, 183, 249, 304
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 3 cut(s) 38, 251, 293
HapII CCGG 2 cut(s) 35, 63
Hin1II CATG 3 cut(s) 19, 166, 214
HpaII CCGG 2 cut(s) 35, 63
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 37, 66
HpyCH4V TGCA 2 cut(s) 176, 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 182, 206
HpyF3I CTNAG 3 cut(s) 55, 118, 201
Hsp92II CATG 3 cut(s) 19, 166, 214
Kzo9I GATC 1 cut(s) 297
LguI GCTCTTC 1 cut(s) 219
LpnPI CCDG 3 cut(s) 48, 76, 127
Lsp1109I GCAGC 5 cut(s) 150, 160, 166, 188, 194
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 5 cut(s) 22, 230, 233, 236, 268
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 231
MnlI CCTC 7 cut(s) 64, 103, 144, 147, 170, 230, 238
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 2 cut(s) 179, 185
MspI CCGG 2 cut(s) 35, 63
MspR9I CCNGG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 179, 182, 206
NciI CCSGG 1 cut(s) 35
NcoI CCATGG 1 cut(s) 210
NdeII GATC 1 cut(s) 297
NlaIII CATG 3 cut(s) 19, 166, 214
NlaIV GGNNCC 2 cut(s) 51, 158
NmuCI GTSAC 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 219
PkrI GCNGC 7 cut(s) 140, 175, 178, 181, 184, 250, 305
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 51, 158
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 2 cut(s) 178, 184
PsuI RGATCY 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 219
SatI GCNGC 7 cut(s) 139, 174, 177, 180, 183, 249, 304
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 231
SetI ASST 6 cut(s) 29, 51, 119, 162, 181, 207
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 2 cut(s) 174, 180
SgrAI CRCCGGYG 1 cut(s) 62
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 146
SsiI CCGC 5 cut(s) 21, 66, 185, 248, 304
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 2 cut(s) 45, 210
TaqI TCGA 1 cut(s) 8
TauI GCSGC 2 cut(s) 251, 306
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 5 cut(s) 138, 173, 176, 179, 182
Tsp45I GTSAC 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.