Rorug05G0272600

Photosystem II 5 kDa protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
30732718 .. 30739634
6917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0272600.1

Sequence Viewer

Length: 3747 bp
ATGGAGGAGAGTCCAATTCAAGAGCAAGAAGATGCGCTTCTGGTTTCACCAACTGGCGGAGGAGACCCATTTCACAAAAAAGCCTACTTTCTGAAACCCATTGTCCCTATTTCCTCCATTGATCGTGAACCTCCTTTCAAGCTCCCTCAGTGCCCTTTTCGTTTCGACCCAAAAAAGTGGCCTTTGGAGGTTGAATTCCACGGTTGGCGACAAGGTCAAGAAGATTGGAATTCTTGGGTTGATCGCTTGGCTCCTCTTCACCAATCTACATGGAAAAGAGCTGGTATTTATGATGCAATCTTTAATTCTAAGTACCAAATAAGAAGAAAGACTGATTTGGTTTTCGGGTTTGCGGAGAAATGGTGTTCTGAGACCAATACCTTCATCTTTCCTTGGGGTGAAGCAACCATTACATTGGAGGATGTCATGGTTTTGGGAGGCTTTTCGGTTTCCGGGGACTCTATTTTCAGTCCACTTGAAAGCATTGAACTAAAGGAAGTGGAAGAGAGGTTGATTAAGGTAAGGAAAGAAGTTAAGAGAGCGAAGGCAAGCAAATGGCTGCAGAAGTTTGTGAACAGTCAGAGTGAATTGGAGCATGAAGCATTTCTTGCCTTTTGGTTGTCAAGGTATGTTTTTTTCGATGGTGATAGTTTAATACAAAAGCGTGTTTTTCCCCTTGCAATTCATTTAGCTAGGGGGACTAGAATTGCACTTGCACAGCCTGTTCTTGCTGATATTTATAATGATTTGAGTTTGTTCAATAATACAATTGTGGCCTCAAATGAATTAAATACCGGTGATTGTGTCTTGAACGTGAAACTCAAGTCACCGTTTCAATTAGTTCAGGTTTGGGCTTGGGAAAGATTTTTGGAACTTAGGCCAATATTCAATGTCATCAAATATGGTGAGCCGAGATTGGCTCGATGGCATAAAGCAAATGGTCTGAGTATTGAAAATTTAAGAAGTGTTTTAGACTCAGCTGGAGATGCCTTCATGTGGCGCCCTTATGCCATGGCCATTGAGAACTGGAATTTTCCTAAATACTACTCGGAAAAGGAAATGTGGGTTGGTCCTGGTTTGGATGATGAGTTCCTGCAATTTTCCATGTTCTTGAGGGTGACGAAGTTAGTTGGATTCAATACTAGGAAACAATACTTTCCACATCGAGTAGCTATGCAATTTGGATATGATCAAGACATTCCATGTAAGATTGCTCAATCCAAAGTATCCAGGAAGCATTGCAGTGACAAACCTGAGATTGTAGGATTCTACATTCCATCCACACTTTCTGAGCCGAATGTTAGTGCAAGATACTTGAAGTGGTGGAATGAATCAGTGTCAGGTCTCAAAGACACAAGTGAGGCCGCTATGCCCCAAAAGAAGAAAGCAAAGAGGATGGAAGGATCACTAGTAAGGGCTAAACAATCCCCAGTACATCCTGAATATCCTCTTAAGAAAAATTTAGAACGTTCTAAAAAGAGGAAGAGAAAGGAGAGCTTATGCTTTAGGCAGAGTGCCCCAGACATCATGGTTGAAGAAAAAGAAGAGCTTATGGTTTCACCAACTGGTGGAGACCCATTTCCCAAAAAAGCCTACTATCTGAAACCAGTTGTGCCTTCCTCCACCGAAAAACCCCCTTTTAAGTTCCCTACTGAATCTTTCTCCCCCCTTCCTTCTGATTTTGAGCCAAGAAAATGGCCATTAGAGGTTGATATCCCTGGATGGAGAGTTAAGGGTCAAAAAGATGATTGGAATGCTTGGGTTGATCAATTGGCTCCAGTCCACCAATCTACGTGGAAGACAGCTGGCATATATGAAGCCATCTTCAATTCGACCTATGAAATAAGAAGAAAAAACGATTTGGTATATGGATTTGCAGAAAAGTGGTGTTCTGAGACTAATACATTCATTTTTCCTTGGGGTGAAGCAACAATCACATTGGAGGATGTTATGGTGATGGGCGGCTATTCCGTTCTTGGAGAGTCGATTTTCAGCCCTCTTGAAAGCAGAGAGCTCAAGGAAATAGAAGAGAAACTTAATCAAGAGCGAACAGAGATAAACAGGGGTGCGTCGCATAGACCTTCTACTAGCTTATGGTTGAAGAAATTCATGAACAGTGGGACTTTATTGGAGCACGAAGCATTCCTTGCATTTTGGTTATCAAGGTATGTATTTCCGGATGCTCGTAGTACAATACAAAAGCATGTATTCCCAATTGCAATTCGTTTAGCTAGGGGAACCCGAATTGCATTTGCACCTGCTGTTCTTGCTAGCATTTATAAGGACTTGAGTTTGTTGAAATGCGCAATTGTGGATACAAGTAAGTTAAGGACAGGTTGTGATGCTATAAAACTCAGCATCAAGTCACCATTTCAGTTTGTTCAACTTTGGGCGTGGGAAAGATTTGTAGAGCTGAGTCCAAATCCCAGAATGATCAATTTTGCGCAGCCAAGATTGGCTCGATGGGACAAAGTAAGTGGCGTGGAAGTTGAAAACTTGAGGAAGGTTTTAGAATCTGCCGGAGATGGTTTCAAGTGGCGTCCTTATGCCTTGACCATTGAAAACTGGCAGTTGCCTAAGTACTATCCTGTAGAGGAAATGCATGTATCAGATTGTTGGGGTTTGGATGATGAGTTGCATTCATTTTTCAGATGCTTGAGGGTTAGTGAGTTAGCTGGATTCAGTACCATTGAGCAGTACCTTCCGCATAGAGTAGCAATGCAATTTGGTTTCGATCAAGACATTCCATGCATTGTGGCTCGATCCAATCAAAGTTCTGATATAGCCTGGAATCATTACATCAAGGAAATTCAGAATGCAAGGTTGTATGTTCCATCCAGGCTTTCAAAGGCAGATATTAGCACAAGATACTTGAAGTGGTGGAAGGAATCAGTGTCGGGTCTCAAAAAGTCCACCATGCCAAAATTAGAAAAATCAAAATGCATGGGAGGATCCCTACCTAGGGCTAAACCTGCCCCTGTAGATCCTGGCTCTGCCCCAGAGAAAGCTGTAGAGGGTTCTAAGAAACGGAAGAAGAATAATGATTTCACTCTTCCTTCTGTTTCTGTTCCAAAGTACTCAGATGAAGGTGATGATTTCCTTGTTCCGCTGGGATTTCCTCCCAAATGTAGCGTAATGGAAGCTGGATGTTCAGTGGACGAAGATGGACTAACTTTATCAGAAATTTGGAAATATTGTAAGAAACAGAAAAATGTAAATACGAGAACATGTGGTCAGCGTAAGAAGTTAGCAGGTCAAGTTCAAAGTCTGGCATCTTCAATTGGAGCAAGTTCTGTTGATACTATGAAGTCAGAGAGGTTGGAAGCTAGAGGTCTGATAGACGAAGATGGACCAAGTAAATCAGAAACTTTTGAAAATTCTAAGAAACATAAAAATGGTGAAACTAGAACGTGTGATGACAGTGAGAAATTATCAGGTCAAGGTCAAGATCTGGCATCTTCAATTGCAGAAAGTTCTGTTGACACTATAAACTCAGAGAGATTGGTGACAGAGGACATGTTGAATGAAGTTTTGATTGGAAGATTCAAGGCCGAAAGAAACCTGAAAACTGTGATGAGGAGTAATGCAAGAAGTTCAGATAATGAGATGGCAAGCATCGTTGACAATGAATGTGCTAGCAGCAGCTCTCCAATTGAGAAACGGGTTTCAGTGCTTAAAGCTAGGGCCAGCAGGCTTGAGAGTATAGTTAGCATGTTGAAAGAAAATTATCCTTGGACCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1248

Amino Acids

142.73

Weight (kDa)

8.78

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 95 - 443 1.1e-100 Plant mobile domain
PMD PF10536 603 - 962 9.3e-113 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011058)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 741, 2280
AarI CACCTGC 1 cut(s) 2266
Acc16I TGCGCA 2 cut(s) 2305, 2445
Acc36I ACCTGC 3 cut(s) 2266, 2980, 3242
AccB1I GGYRCC 1 cut(s) 999
AccB7I CCANNNNNTGG 1 cut(s) 1568
AccIII TCCGGA 1 cut(s) 2176
AciI CCGC 6 cut(s) 57, 353, 1365, 1962, 2705, 3107
AclI AACGTT 1 cut(s) 1468
AclWI GGATC 5 cut(s) 1411, 2757, 2946, 2959, 2978
AcoI YGGCCR 2 cut(s) 1014, 1697
AcsI RAATTY 9 cut(s) 194, 229, 955, 1030, 1459, 2105, 2808, 3183, 3376
AcyI GRCGYC 2 cut(s) 1000, 2539
AfaI GTAC 7 cut(s) 314, 1434, 2191, 2582, 2686, 2699, 3077
AfiI CCNNNNNNNGG 5 cut(s) 56, 996, 1568, 2961, 2962
AflII CTTAAG 1 cut(s) 1451
AflIII ACRYGT 3 cut(s) 3227, 3410, 3516
AgeI ACCGGT 1 cut(s) 794
AhlI ACTAGT 1 cut(s) 1408
AjnI CCWGG 6 cut(s) 1072, 1229, 1717, 2786, 2837, 2986
AjuI GAANNNNNNNTTGG 4 cut(s) 1050, 1082, 3519, 3551
AloI GAACNNNNNNTCC 2 cut(s) 1073, 1105
Alw21I GWGCWC 2 cut(s) 2016, 2136
Alw26I GTCTC 6 cut(s) 57, 365, 1349, 1566, 1889, 2906
AlwI GGATC 5 cut(s) 1411, 2757, 2946, 2959, 2978
Aor13HI TCCGGA 1 cut(s) 2176
AoxI GGCC 8 cut(s) 179, 774, 878, 1014, 1362, 1697, 3549, 3684
ApeKI GCWGC 4 cut(s) 559, 2446, 3639, 3642
ApoI RAATTY 9 cut(s) 194, 229, 955, 1030, 1459, 2105, 2808, 3183, 3376
AsiGI ACCGGT 1 cut(s) 794
Asp700I GAANNNNTTC 2 cut(s) 603, 2105
AspA2I CCTAGG 1 cut(s) 2960
AspLEI GCGC 4 cut(s) 37, 1002, 2306, 2446
AspS9I GGNCC 4 cut(s) 1070, 3350, 3684, 3735
AsuC2I CCSGG 1 cut(s) 454
AsuNHI GCTAGC 2 cut(s) 2270, 3635
AvaII GGWCC 3 cut(s) 1070, 3350, 3735
AvrII CCTAGG 1 cut(s) 2960
BaeGI GKGCMC 2 cut(s) 155, 1519
BalI TGGCCA 2 cut(s) 1016, 1699
BamHI GGATCC 1 cut(s) 2951
BanI GGYRCC 1 cut(s) 999
BanII GRGCYC 1 cut(s) 2016
BbsI GAAGAC 1 cut(s) 1805
Bbv12I GWGCWC 2 cut(s) 2016, 2136
BbvI GCAGC 4 cut(s) 546, 2458, 3651, 3654
BciT130I CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2839, 2988
BciVI GTATCC 2 cut(s) 1237, 2308
BclI TGATCA 3 cut(s) 1189, 1765, 2433
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 6 cut(s) 57, 365, 1349, 1566, 1889, 2906
BcuI ACTAGT 1 cut(s) 1408
BfmI CTRYAG 4 cut(s) 560, 2589, 2979, 3009
BfoI RGCGCY 1 cut(s) 1003
BfrI CTTAAG 1 cut(s) 1451
BfuAI ACCTGC 3 cut(s) 2266, 2980, 3242
BfuI GTATCC 2 cut(s) 1237, 2308
BglII AGATCT 1 cut(s) 3448
BisI GCNGC 6 cut(s) 560, 1365, 1963, 2447, 3640, 3643
BlnI CCTAGG 1 cut(s) 2960
BlsI GCNGC 6 cut(s) 561, 1366, 1964, 2448, 3641, 3644
BmcAI AGTACT 2 cut(s) 2582, 3077
Bme1390I CCNGG 7 cut(s) 454, 1074, 1231, 1719, 2788, 2839, 2988
Bme18I GGWCC 3 cut(s) 1070, 3350, 3735
BmgT120I GGNCC 4 cut(s) 1070, 3350, 3684, 3735
BmiI GGNNCC 5 cut(s) 252, 1001, 1776, 2239, 2953
BmrFI CCNGG 7 cut(s) 454, 1074, 1231, 1719, 2788, 2839, 2988
BmrI ACTGGG 1 cut(s) 1424
BmtI GCTAGC 2 cut(s) 2274, 3639
BmuI ACTGGG 1 cut(s) 1424
BpiI GAAGAC 1 cut(s) 1805
BplI GAGNNNNNCTC 2 cut(s) 904, 936
BpmI CTGGAG 2 cut(s) 1002, 1761
BpuEI CTTGAG 7 cut(s) 806, 1132, 2000, 2308, 2518, 2677, 3716
BpuMI CCSGG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 1794
BsaHI GRCGYC 2 cut(s) 1000, 2539
BsaI GGTCTC 5 cut(s) 57, 365, 1349, 1566, 2906
BsaJI CCNNGG 8 cut(s) 199, 392, 453, 1011, 1717, 1916, 2960, 3731
BsaWI WCCGGW 2 cut(s) 794, 2176
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 996, 1568, 2961, 2962
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 7 cut(s) 58, 1031, 1430, 1570, 1607, 1778, 2570
Bse3DI GCAATG 2 cut(s) 1237, 2724
BseAI TCCGGA 1 cut(s) 2176
BseBI CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2839, 2988
BseDI CCNNGG 8 cut(s) 199, 392, 453, 1011, 1717, 1916, 2960, 3731
BseLI CCNNNNNNNGG 5 cut(s) 56, 996, 1568, 2961, 2962
BseMI GCAATG 2 cut(s) 1237, 2724
BseNI ACTGG 7 cut(s) 58, 1031, 1430, 1570, 1607, 1778, 2570
BseRI GAGGAG 4 cut(s) 20, 75, 243, 3592
BseSI GKGCMC 2 cut(s) 155, 1519
BseXI GCAGC 4 cut(s) 546, 2458, 3651, 3654
BseYI CCCAGC 1 cut(s) 3109
BshFI GGCC 8 cut(s) 181, 776, 880, 1016, 1364, 1699, 3551, 3686
BshNI GGYRCC 1 cut(s) 999
BshTI ACCGGT 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 2016, 2136
BsiSI CCGG 4 cut(s) 453, 795, 2177, 2520
BslFI GGGAC 5 cut(s) 89, 470, 712, 2134, 2480
BslI CCNNNNNNNGG 5 cut(s) 56, 996, 1568, 2961, 2962
BsmAI GTCTC 6 cut(s) 57, 365, 1349, 1566, 1889, 2906
BsmFI GGGAC 5 cut(s) 89, 470, 712, 2134, 2480
BsmI GAATGC 4 cut(s) 1759, 2141, 2638, 2821
BsnI GGCC 8 cut(s) 181, 776, 880, 1016, 1364, 1699, 3551, 3686
Bso31I GGTCTC 5 cut(s) 57, 365, 1349, 1566, 2906
Bsp1286I GDGCHC 4 cut(s) 155, 1519, 2016, 2136
Bsp13I TCCGGA 1 cut(s) 2176
Bsp19I CCATGG 1 cut(s) 1011
BspACI CCGC 6 cut(s) 57, 353, 1365, 1962, 2705, 3107
BspANI GGCC 8 cut(s) 181, 776, 880, 1016, 1364, 1699, 3551, 3686
BspEI TCCGGA 1 cut(s) 2176
BspHI TCATGA 1 cut(s) 2109
BspLI GGNNCC 5 cut(s) 252, 1001, 1776, 2239, 2953
BspMAI CTGCAG 1 cut(s) 564
BspMI ACCTGC 3 cut(s) 2266, 2980, 3242
BspOI GCTAGC 2 cut(s) 2274, 3639
BspPI GGATC 5 cut(s) 1411, 2757, 2946, 2959, 2978
BspQI GCTCTTC 1 cut(s) 1539
BspT107I GGYRCC 1 cut(s) 999
BspTI CTTAAG 1 cut(s) 1451
BspTNI GGTCTC 5 cut(s) 57, 365, 1349, 1566, 2906
BsrDI GCAATG 2 cut(s) 1237, 2724
BsrFI RCCGGY 1 cut(s) 794
BsrI ACTGG 7 cut(s) 58, 1031, 1430, 1570, 1607, 1778, 2570
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 8 cut(s) 199, 392, 453, 1011, 1717, 1916, 2960, 3731
BssNI GRCGYC 2 cut(s) 1000, 2539
BssT1I CCWWGG 5 cut(s) 392, 1011, 1916, 2960, 3731
Bst2UI CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2839, 2988
Bst4CI ACNGT 6 cut(s) 203, 578, 831, 2117, 3422, 3571
Bst6I CTCTTC 6 cut(s) 261, 498, 1478, 1539, 2022, 3057
BstACI GRCGYC 2 cut(s) 1000, 2539
BstAFI CTTAAG 1 cut(s) 1451
BstAPI GCANNNNNTGC 2 cut(s) 608, 2147
BstBAI YACGTR 1 cut(s) 1794
BstC8I GCNNGC 7 cut(s) 550, 1807, 2272, 3613, 3637, 3688, 3692
BstDSI CCRYGG 2 cut(s) 199, 1011
BstH2I RGCGCY 1 cut(s) 1003
BstHHI GCGC 4 cut(s) 37, 1002, 2306, 2446
BstMAI GTCTC 6 cut(s) 57, 365, 1349, 1566, 1889, 2906
BstMWI GCNNNNNNNGC 5 cut(s) 608, 986, 2147, 2267, 2972
BstNI CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2839, 2988
BstNSI RCATGY 5 cut(s) 2207, 2606, 3231, 3520, 3715
BstSCI CCNGG 7 cut(s) 452, 1072, 1229, 1717, 2786, 2837, 2986
BstSFI CTRYAG 4 cut(s) 560, 2589, 2979, 3009
BstSLI GKGCMC 2 cut(s) 155, 1519
BstV1I GCAGC 4 cut(s) 546, 2458, 3651, 3654
BstV2I GAAGAC 1 cut(s) 1805
BstX2I RGATCY 3 cut(s) 2951, 2983, 3448
BstXI CCANNNNNNTGG 3 cut(s) 177, 415, 1695
BstYI RGATCY 3 cut(s) 2951, 2983, 3448
BsuI GTATCC 2 cut(s) 1237, 2308
BsuRI GGCC 8 cut(s) 181, 776, 880, 1016, 1364, 1699, 3551, 3686
BtgI CCRYGG 2 cut(s) 199, 1011
BtsI GCAGTG 1 cut(s) 1249
BtsIMutI CAGTG 8 cut(s) 155, 1249, 1341, 2122, 2898, 3159, 3427, 3675
BveI ACCTGC 3 cut(s) 2266, 2980, 3242
Cac8I GCNNGC 7 cut(s) 550, 1807, 2272, 3613, 3637, 3688, 3692
CciI TCATGA 1 cut(s) 2109
CfoI GCGC 4 cut(s) 37, 1002, 2306, 2446
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 4 cut(s) 1070, 3350, 3684, 3735
CseI GACGC 2 cut(s) 2058, 2528
Csp6I GTAC 7 cut(s) 313, 1433, 2190, 2581, 2685, 2698, 3076
CspAI ACCGGT 1 cut(s) 794
CspCI CAANNNNNGTGG 4 cut(s) 1775, 1810, 2458, 2493
CviQI GTAC 7 cut(s) 313, 1433, 2190, 2581, 2685, 2698, 3076
DinI GGCGCC 1 cut(s) 1001
EaeI YGGCCR 2 cut(s) 1014, 1697
Eam1104I CTCTTC 6 cut(s) 261, 498, 1478, 1539, 2022, 3057
EarI CTCTTC 6 cut(s) 261, 498, 1478, 1539, 2022, 3057
EciI GGCGGA 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 2014
Eco130I CCWWGG 5 cut(s) 392, 1011, 1916, 2960, 3731
Eco24I GRGCYC 1 cut(s) 2016
Eco31I GGTCTC 5 cut(s) 57, 365, 1349, 1566, 2906
Eco32I GATATC 1 cut(s) 1714
Eco47I GGWCC 3 cut(s) 1070, 3350, 3735
Eco53kI GAGCTC 1 cut(s) 2014
EcoICRI GAGCTC 1 cut(s) 2014
EcoRI GAATTC 2 cut(s) 194, 229
EcoRII CCWGG 6 cut(s) 1072, 1229, 1717, 2786, 2837, 2986
EcoRV GATATC 1 cut(s) 1714
EcoT14I CCWWGG 5 cut(s) 392, 1011, 1916, 2960, 3731
EcoT22I ATGCAT 3 cut(s) 2604, 2753, 2945
EcoT38I GRGCYC 1 cut(s) 2016
EgeI GGCGCC 1 cut(s) 1001
EheI GGCGCC 1 cut(s) 1001
ErhI CCWWGG 5 cut(s) 392, 1011, 1916, 2960, 3731
FaqI GGGAC 5 cut(s) 89, 470, 712, 2134, 2480
FbaI TGATCA 3 cut(s) 1189, 1765, 2433
Fnu4HI GCNGC 6 cut(s) 560, 1365, 1963, 2447, 3640, 3643
FriOI GRGCYC 1 cut(s) 2016
Fsp4HI GCNGC 6 cut(s) 560, 1365, 1963, 2447, 3640, 3643
FspI TGCGCA 2 cut(s) 2305, 2445
GlaI GCGC 4 cut(s) 36, 1001, 2305, 2445
GluI GCNGC 6 cut(s) 560, 1365, 1963, 2447, 3640, 3643
GsaI CCCAGC 1 cut(s) 3113
GsuI CTGGAG 2 cut(s) 1002, 1761
HaeII RGCGCY 1 cut(s) 1003
HaeIII GGCC 8 cut(s) 181, 776, 880, 1016, 1364, 1699, 3551, 3686
HapII CCGG 4 cut(s) 453, 795, 2177, 2520
HgaI GACGC 2 cut(s) 2058, 2528
HhaI GCGC 4 cut(s) 37, 1002, 2306, 2446
Hin1I GRCGYC 2 cut(s) 1000, 2539
Hin6I GCGC 4 cut(s) 35, 1000, 2304, 2444
HinP1I GCGC 4 cut(s) 35, 1000, 2304, 2444
HincII GTYRAC 2 cut(s) 3481, 3622
HindII GTYRAC 2 cut(s) 3481, 3622
HpaII CCGG 4 cut(s) 453, 795, 2177, 2520
Hpy166II GTNNAC 8 cut(s) 128, 473, 574, 1783, 2913, 3157, 3481, 3622
Hpy8I GTNNAC 8 cut(s) 128, 473, 574, 1783, 2913, 3157, 3481, 3622
Hpy99I CGWCG 1 cut(s) 2074
HpyCH4III ACNGT 6 cut(s) 203, 578, 831, 2117, 3422, 3571
HpyCH4IV ACGT 4 cut(s) 813, 1468, 1793, 3410
HpyF10VI GCNNNNNNNGC 5 cut(s) 608, 986, 2147, 2267, 2972
HpySE526I ACGT 4 cut(s) 813, 1468, 1793, 3410
Hsp92I GRCGYC 2 cut(s) 1000, 2539
HspAI GCGC 4 cut(s) 35, 1000, 2304, 2444
KasI GGCGCC 1 cut(s) 999
Kpn2I TCCGGA 1 cut(s) 2176
Ksp22I TGATCA 3 cut(s) 1189, 1765, 2433
LguI GCTCTTC 1 cut(s) 1539
LmnI GCTCC 6 cut(s) 147, 256, 592, 1780, 2131, 3284
Lsp1109I GCAGC 4 cut(s) 546, 2458, 3651, 3654
MaeII ACGT 4 cut(s) 813, 1468, 1793, 3410
MaeIII GTNAC 5 cut(s) 825, 1117, 1244, 2364, 3505
MfeI CAATTG 7 cut(s) 768, 1769, 2214, 2307, 3279, 3462, 3651
MflI RGATCY 3 cut(s) 2951, 2983, 3448
MhlI GDGCHC 4 cut(s) 155, 1519, 2016, 2136
MlsI TGGCCA 2 cut(s) 1016, 1699
MluNI TGGCCA 2 cut(s) 1016, 1699
Mly113I GGCGCC 1 cut(s) 1000
MlyI GAGTC 5 cut(s) 19, 452, 968, 1991, 2425
MmeI TCCRAC 2 cut(s) 1111, 3300
Mox20I TGGCCA 2 cut(s) 1016, 1699
Mph1103I ATGCAT 3 cut(s) 2604, 2753, 2945
MroI TCCGGA 1 cut(s) 2176
MroXI GAANNNNTTC 2 cut(s) 603, 2105
MscI TGGCCA 2 cut(s) 1016, 1699
MslI CAYNNNNRTG 2 cut(s) 1242, 3393
Msp20I TGGCCA 2 cut(s) 1016, 1699
MspA1I CMGCKG 3 cut(s) 980, 1805, 3109
MspCI CTTAAG 1 cut(s) 1451
MspI CCGG 4 cut(s) 453, 795, 2177, 2520
MspR9I CCNGG 7 cut(s) 454, 1074, 1231, 1719, 2788, 2839, 2988
MunI CAATTG 7 cut(s) 768, 1769, 2214, 2307, 3279, 3462, 3651
Mva1269I GAATGC 4 cut(s) 1759, 2141, 2638, 2821
MvaI CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2839, 2988
MwoI GCNNNNNNNGC 5 cut(s) 608, 986, 2147, 2267, 2972
NarI GGCGCC 1 cut(s) 1000
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 1011
NheI GCTAGC 2 cut(s) 2270, 3635
NlaIV GGNNCC 5 cut(s) 252, 1001, 1776, 2239, 2953
NmeAIII GCCGAG 1 cut(s) 936
NmuCI GTSAC 5 cut(s) 825, 1117, 1244, 2364, 3505
NsbI TGCGCA 2 cut(s) 2305, 2445
NsiI ATGCAT 3 cut(s) 2604, 2753, 2945
NspI RCATGY 5 cut(s) 2207, 2606, 3231, 3520, 3715
PagI TCATGA 1 cut(s) 2109
PaqCI CACCTGC 1 cut(s) 2266
PciI ACATGT 2 cut(s) 3227, 3516
PciSI GCTCTTC 1 cut(s) 1539
PctI GAATGC 4 cut(s) 1759, 2141, 2638, 2821
PdmI GAANNNNTTC 2 cut(s) 603, 2105
PfeI GAWTC 9 cut(s) 1134, 1266, 1331, 1655, 2513, 2679, 2791, 2888, 3543
PflFI GACNNNGTC 1 cut(s) 213
PflMI CCANNNNNTGG 1 cut(s) 1568
PfoI TCCNGGA 1 cut(s) 1229
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 6 cut(s) 561, 1366, 1964, 2448, 3641, 3644
PleI GAGTC 5 cut(s) 18, 452, 968, 1990, 2424
PluTI GGCGCC 1 cut(s) 1003
PpsI GAGTC 5 cut(s) 18, 452, 968, 1990, 2424
Ppu21I YACGTR 1 cut(s) 1794
PscI ACATGT 2 cut(s) 3227, 3516
PsiI TTATAA 2 cut(s) 741, 2280
Psp124BI GAGCTC 1 cut(s) 2016
Psp1406I AACGTT 1 cut(s) 1468
Psp6I CCWGG 6 cut(s) 1072, 1229, 1717, 2786, 2837, 2986
PspFI CCCAGC 1 cut(s) 3109
PspGI CCWGG 6 cut(s) 1072, 1229, 1717, 2786, 2837, 2986
PspN4I GGNNCC 5 cut(s) 252, 1001, 1776, 2239, 2953
PspPI GGNCC 4 cut(s) 1070, 3350, 3684, 3735
PstI CTGCAG 1 cut(s) 564
PsuI RGATCY 3 cut(s) 2951, 2983, 3448
PsyI GACNNNGTC 1 cut(s) 213
PvuII CAGCTG 2 cut(s) 980, 1805
RsaI GTAC 7 cut(s) 314, 1434, 2191, 2582, 2686, 2699, 3077
RsaNI GTAC 7 cut(s) 313, 1433, 2190, 2581, 2685, 2698, 3076
RseI CAYNNNNRTG 2 cut(s) 1242, 3393
SacI GAGCTC 1 cut(s) 2016
SapI GCTCTTC 1 cut(s) 1539
SatI GCNGC 6 cut(s) 560, 1365, 1963, 2447, 3640, 3643
Sau96I GGNCC 4 cut(s) 1070, 3350, 3684, 3735
ScaI AGTACT 2 cut(s) 2582, 3077
SchI GAGTC 5 cut(s) 19, 452, 968, 1991, 2425
ScrFI CCNGG 7 cut(s) 454, 1074, 1231, 1719, 2788, 2839, 2988
SduI GDGCHC 4 cut(s) 155, 1519, 2016, 2136
SfcI CTRYAG 4 cut(s) 560, 2589, 2979, 3009
SfoI GGCGCC 1 cut(s) 1001
SinI GGWCC 3 cut(s) 1070, 3350, 3735
SmiMI CAYNNNNRTG 2 cut(s) 1242, 3393
SmlI CTYRAG 8 cut(s) 821, 1111, 1451, 2015, 2287, 2497, 2656, 3695
SmoI CTYRAG 8 cut(s) 821, 1111, 1451, 2015, 2287, 2497, 2656, 3695
SpeI ACTAGT 1 cut(s) 1408
SsiI CCGC 6 cut(s) 57, 353, 1365, 1962, 2705, 3107
SspDI GGCGCC 1 cut(s) 999
SspI AATATT 2 cut(s) 885, 3194
SstI GAGCTC 1 cut(s) 2016
StyD4I CCNGG 7 cut(s) 452, 1072, 1229, 1717, 2786, 2837, 2986
StyI CCWWGG 5 cut(s) 392, 1011, 1916, 2960, 3731
TaaI ACNGT 6 cut(s) 203, 578, 831, 2117, 3422, 3571
TaiI ACGT 4 cut(s) 816, 1471, 1796, 3413
TaqI TCGA 9 cut(s) 165, 639, 922, 1165, 1832, 1985, 2461, 2733, 2761
TatI WGTACW 4 cut(s) 1432, 2189, 2580, 3075
TauI GCSGC 2 cut(s) 1367, 1965
TfiI GAWTC 9 cut(s) 1134, 1266, 1331, 1655, 2513, 2679, 2791, 2888, 3543
TscAI CASTG 8 cut(s) 155, 1249, 1341, 2122, 2898, 3159, 3427, 3675
TseFI GTSAC 5 cut(s) 825, 1117, 1244, 2364, 3505
TseI GCWGC 4 cut(s) 559, 2446, 3639, 3642
Tsp45I GTSAC 5 cut(s) 825, 1117, 1244, 2364, 3505
TspGWI ACGGA 2 cut(s) 1960, 3043
TspRI CASTG 8 cut(s) 155, 1249, 1341, 2122, 2898, 3159, 3427, 3675
Tth111I GACNNNGTC 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 1568
Vha464I CTTAAG 1 cut(s) 1451
VpaK11BI GGWCC 3 cut(s) 1070, 3350, 3735
XapI RAATTY 9 cut(s) 194, 229, 955, 1030, 1459, 2105, 2808, 3183, 3376
XceI RCATGY 5 cut(s) 2207, 2606, 3231, 3520, 3715
XmaJI CCTAGG 1 cut(s) 2960
XmnI GAANNNNTTC 2 cut(s) 603, 2105
ZrmI AGTACT 2 cut(s) 2582, 3077
Zsp2I ATGCAT 3 cut(s) 2604, 2753, 2945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.