Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011058

Physical Location & Seq

Genomic Coordinates Reverse (-)

21691297 .. 21699967

Gene Structure 8671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28720.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGACGACAACGACTACGACGGCGTTCGGAGCTGCGACGACGGCGGTGCTCGGGGAGCCCAAGCTGGAGATTGGAAGGTACCAGGGGCTGAGGTCAGCGAACTCGCTCGCTCTCACCGGAGGCAGACACGTCGGTCTCTTCCCGGCTTCGTCCCGGAGCTCTTCCCTCATCCAAGCCGTCTCTACGCCTGCAAAGCCTGAGACTGCAACAAAGCGGAGCAAGGTTGAGATATTCAAAGAACAGAGCAACTTTATTAGATACCCACTTAATGAAGAGATTTTAACGGATGCTCCCAATATAAATGAAGCTGCTACCCAACTCATCAAGTTTCATGGGAGCTATCAACAATACAACCGAGATGAACGTGGTGGAAGGTCTTACTCATTTATGCTCCGTACCAAGAATCCTTGTGGGAAAGTGTCAAACCAACTGTACTTGACAATGGATGATCTTGCCGATCAGTTTGGAATTGGGACCCTTCGTTTGACCACCAGACAAACATTTCAGCTCCATGGTGTTTTGAAGAAGGACCTTAAGACAGTAATGGGTAGCATCATTAGAAGCATGGGTTCAACTCTTGGTGCCTGTGGTGATCTTAATAGGAATGTACTTGCTCCTGCTGCTCCACTTGTAAGAAAAGATTACCTTTTCGCACAGCAGACAGCAGAGAACATTGCGGCCTTGCTGACTCCTCAGTCTGGTTTTTACTATGATGTATGGGTGGATGGAGAGCAGTTCCTGACAGCAGAACCTCCTGAAGTAACCAAGGCCAGAAACGATAACTCTAATGGAAAAACCTTCACTGATTCCCCTGAGCCCATCTATGGAACACAGTTCTTGCCCAGGAAGTTCAAAATTGCAGTCACTGTGCCAACAGATAACTCGGTAGACATTCTCACCAATGATATTGGCGTTGTGGTTGTTACTGATGATAATGGGGAGCCTCAAGGGTTCAATATTTATGTTGGTGGTGGTATGGGAAGAACACATAGGATGGAGACCACATTTGCCCGTCTAGCTGAACCATTGGGTTATGTTCCCAAAGAGGATATTCTAAAAGCAATTAAGTCTATTGTAGAAGTGCAACGAAATCATGGCAGAAGAGATGATCGTAGGTATAGTAGAATGAAATATTTGATCAGTGAATGGGGAATTGAAAAGTTTAGAAGAGAACTTGAAGACAATTATTACCAAAAGAAATTTGAGCCATTCCGCAAGTTGCCAGAGTGGGAGTTTAAAAGTTACTTGGGATGGCATGAGCAGGGTGATGGCAGTTTATTCTGTGGGCTTCATGTTGATAACGGGCGGATTGGGGGAAAGATGAAGACGGCATTACGAGAGGTTATATCAAAGTATAATTTGAGCATAAGGCTCACACCCAACCAGAATATTATATTGTGTGATATTCGCAATGCATGGAAACGTCCCATCACCACAACTCTTGCACAGGCCGGTCTGCTGCATCCTAGATATGTAGACCCCCTTAACCAAACTGCGATGGCATGTCCGGCCTTCCCTCTATGCCCATTGGCAATAACTGAAGCTGAACGGGGAATACCTGATATTCTTAAGCGAGTTAGAGCGGTATTTGAGAAGGTTGGTCTAAAGTACAATGAATCTGTTGTTATAAGGGTGACTGGCTGCCCCAACGGCTGTGCTAGGCCATACATGGCTGAACTTGGACTAGTGGGTGATGGTCCGAACAGCTATCAGATATGGCTTGGAGGAACACCCAATCAAACTTCAATAGCAAAAAGCTTCATGAACAAGGTCAAGGTTCAAGACCTGGAAAAAGTTTTTGAACCTTTGTTTTATAATTGGAAACGAAAGCGACAAGCTAAAGAATCATTCGGCGACTTCACAATACGTATGGGATTTGAAAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGAGGTGGCACCAACACGTTACAACCTGAAGCTTTTTGCTGATAAGGAGACATATGAAGCAGTTGATCAACTTGCAAAGTTGCAGGATAAGACTGCTCATCAGTTAGCCATGGATGTTATCCGCAATTTTGTTGCTTCCCAGCAAAATGGGAAAAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006275 GO:0006323 GO:0006355 GO:0006790 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009295 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009941 GO:0009987 GO:0010319 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016002 GO:0016020 GO:0016043 GO:0016491 GO:0016667 GO:0016673 GO:0019219 GO:0019222 GO:0019418 GO:0019419 GO:0019424 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031967 GO:0031975 GO:0036385 GO:0042644 GO:0042646 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0048523 GO:0050311 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055114 GO:0060255 GO:0065007 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:1900160 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

NIR_SIR NIR_SIR_ferr

Protein Analysis

693

Amino Acids

77.79

Weight (kDa)

9.13

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIR_SIR_ferr	PF03460	128 - 182	2.3e-14	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	225 - 399	3e-43	Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR_ferr	PF03460	419 - 472	1.6e-11	Nitrite/Sulfite reductase ferredoxin-like half domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04590
fragaria_vesca	FvH4_3g28720 FvH4_3g28720 FvH4_3g28720 FvH4_3g28720
malus_domestica	MD03G1173800.v1.1 MD11G1192000.v1.1
prunus_persica	Prupe.4G250500_v2.0.a1
pyrus_communis	pycom03g13140 pycom11g16770
rosa_chinensis	RchiOBHm_Chr5g0052341
rosa_laevigata	RLG00000034823
rosa_multiflora	Rmu_sc0000968.1_g000009
rosa_roxburghii	Rroxscaffold_1G00028250
rosa_rugosa	Rorug05G0272600
rosa_samantha	Rh5AG345200 Rh5BG356300 Rh5CG381600 Rh5DG371400
rosa_wichuraiana	Rw5G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1628, 1815
AasI	GACNNNNNNGTC	2 cut(s)	132, 694
Acc65I	GGTACC	1 cut(s)	78
AccB1I	GGYRCC	3 cut(s)	78, 581, 1924
AccBSI	CCGCTC	1 cut(s)	1583
AccI	GTMKAC	2 cut(s)	888, 1476
AciI	CCGC	7 cut(s)	44, 214, 677, 1213, 1306, 1583, 2038
AcsI	RAATTY	1 cut(s)	1199
AcuI	CTGAAG	3 cut(s)	777, 1560, 1964
AfaI	GTAC	5 cut(s)	80, 397, 434, 609, 1610
AfiI	CCNNNNNNNGG	2 cut(s)	698, 824
AflII	CTTAAG	2 cut(s)	533, 1568
AflIII	ACRYGT	2 cut(s)	127, 1931
AhlI	ACTAGT	1 cut(s)	1684
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	3 cut(s)	81, 842, 1785
Alw21I	GWGCWC	2 cut(s)	51, 161
Alw26I	GTCTC	5 cut(s)	140, 184, 194, 992, 1958
AlwNI	CAGNNNCTG	3 cut(s)	88, 739, 866
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	5 cut(s)	678, 768, 1449, 1509, 1661
ApeKI	GCWGC	5 cut(s)	32, 308, 620, 1459, 1641
ApoI	RAATTY	1 cut(s)	1199
ArsI	GACNNNNNNTTYG	4 cut(s)	466, 498, 846, 878
Asp700I	GAANNNNTTC	1 cut(s)	1884
Asp718I	GGTACC	1 cut(s)	78
AspS9I	GGNCC	4 cut(s)	474, 529, 1697, 1913
AsuC2I	CCSGG	2 cut(s)	143, 154
AsuHPI	GGTGA	7 cut(s)	106, 602, 889, 1277, 1423, 1645, 1703
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	4 cut(s)	474, 529, 1697, 1913
BanI	GGYRCC	3 cut(s)	78, 581, 1924
BanII	GRGCYC	3 cut(s)	60, 161, 819
BbsI	GAAGAC	2 cut(s)	1185, 1331
Bbv12I	GWGCWC	2 cut(s)	51, 161
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	5 cut(s)	19, 295, 607, 1446, 1628
BccI	CCATC	8 cut(s)	719, 827, 988, 1245, 1262, 1436, 1492, 1688
BceAI	ACGGC	5 cut(s)	36, 57, 161, 1344, 1666
BcgI	CGANNNNNNTGC	4 cut(s)	28, 62, 112, 146
BciT130I	CCWGG	3 cut(s)	83, 844, 1787
BclI	TGATCA	2 cut(s)	1137, 1981
BcnI	CCSGG	2 cut(s)	143, 154
BcoDI	GTCTC	5 cut(s)	140, 184, 194, 992, 1958
BcuI	ACTAGT	1 cut(s)	1684
BfaI	CTAG	4 cut(s)	1016, 1467, 1659, 1685
BfrI	CTTAAG	2 cut(s)	533, 1568
BglI	GCCNNNNNGGC	1 cut(s)	1650
BisI	GCNGC	6 cut(s)	33, 309, 621, 678, 1460, 1642
BlsI	GCNGC	6 cut(s)	34, 310, 622, 679, 1461, 1643
Bme1390I	CCNGG	5 cut(s)	83, 143, 154, 844, 1787
Bme18I	GGWCC	4 cut(s)	474, 529, 1697, 1913
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	4 cut(s)	474, 529, 1697, 1913
BmiI	GGNNCC	7 cut(s)	57, 80, 475, 476, 583, 942, 1926
BmrFI	CCNGG	5 cut(s)	83, 143, 154, 844, 1787
BmsI	GCATC	3 cut(s)	277, 561, 1471
BpiI	GAAGAC	2 cut(s)	1185, 1331
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	2 cut(s)	89, 813
BpuEI	CTTGAG	1 cut(s)	930
BpuMI	CCSGG	2 cut(s)	143, 154
BsaAI	YACGTR	1 cut(s)	1868
BsaI	GGTCTC	2 cut(s)	140, 992
BsaJI	CCNNGG	5 cut(s)	82, 511, 765, 842, 2025
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	698, 824
Bse118I	RCCGGY	1 cut(s)	1451
Bse1I	ACTGG	1 cut(s)	1642
Bse3DI	GCAATG	2 cut(s)	672, 1417
BseBI	CCWGG	3 cut(s)	83, 844, 1787
BseDI	CCNNGG	5 cut(s)	82, 511, 765, 842, 2025
BseGI	GGATG	8 cut(s)	168, 292, 451, 730, 999, 1256, 1462, 2035
BseLI	CCNNNNNNNGG	2 cut(s)	698, 824
BseMI	GCAATG	2 cut(s)	672, 1417
BseMII	CTCAG	4 cut(s)	80, 189, 707, 804
BseNI	ACTGG	1 cut(s)	1642
BseRI	GAGGAG	1 cut(s)	681
BseXI	GCAGC	5 cut(s)	19, 295, 607, 1446, 1628
BseYI	CCCAGC	1 cut(s)	2055
BshFI	GGCC	5 cut(s)	680, 770, 1451, 1511, 1663
BshNI	GGYRCC	3 cut(s)	78, 581, 1924
BsiHKAI	GWGCWC	2 cut(s)	51, 161
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	5 cut(s)	117, 143, 154, 1452, 1508
BslFI	GGGAC	3 cut(s)	136, 487, 1410
BslI	CCNNNNNNNGG	2 cut(s)	698, 824
BsmAI	GTCTC	5 cut(s)	140, 184, 194, 992, 1958
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	3 cut(s)	136, 487, 1410
BsnI	GGCC	5 cut(s)	680, 770, 1451, 1511, 1663
Bso31I	GGTCTC	2 cut(s)	140, 992
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	4 cut(s)	51, 60, 161, 819
Bsp143I	GATC	6 cut(s)	448, 457, 592, 1108, 1137, 1981
Bsp19I	CCATGG	2 cut(s)	511, 2025
BspACI	CCGC	7 cut(s)	44, 214, 677, 1213, 1306, 1583, 2038
BspANI	GGCC	5 cut(s)	680, 770, 1451, 1511, 1663
BspCNI	CTCAG	4 cut(s)	81, 190, 706, 805
BspHI	TCATGA	1 cut(s)	1761
BspLI	GGNNCC	7 cut(s)	57, 80, 475, 476, 583, 942, 1926
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	3 cut(s)	78, 581, 1924
BspTI	CTTAAG	2 cut(s)	533, 1568
BspTNI	GGTCTC	2 cut(s)	140, 992
BsrBI	CCGCTC	1 cut(s)	1583
BsrDI	GCAATG	2 cut(s)	672, 1417
BsrFI	RCCGGY	1 cut(s)	1451
BsrI	ACTGG	1 cut(s)	1642
BssAI	RCCGGY	1 cut(s)	1451
BssECI	CCNNGG	5 cut(s)	82, 511, 765, 842, 2025
BssMI	GATC	6 cut(s)	448, 457, 592, 1108, 1137, 1981
BssT1I	CCWWGG	3 cut(s)	511, 765, 2025
Bst2UI	CCWGG	3 cut(s)	83, 844, 1787
Bst4CI	ACNGT	4 cut(s)	432, 541, 834, 868
Bst6I	CTCTTC	5 cut(s)	143, 166, 267, 1096, 1162
BstAFI	CTTAAG	2 cut(s)	533, 1568
BstBAI	YACGTR	1 cut(s)	1868
BstC8I	GCNNGC	2 cut(s)	108, 189
BstDEI	CTNAG	4 cut(s)	89, 198, 693, 813
BstDSI	CCRYGG	2 cut(s)	511, 2025
BstF5I	GGATG	8 cut(s)	168, 292, 451, 730, 999, 1256, 1462, 2035
BstKTI	GATC	6 cut(s)	451, 460, 595, 1111, 1140, 1984
BstMAI	GTCTC	5 cut(s)	140, 184, 194, 992, 1958
BstMBI	GATC	6 cut(s)	448, 457, 592, 1108, 1137, 1981
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 41, 55, 193, 620, 1016, 1508, 1650
BstNI	CCWGG	3 cut(s)	83, 844, 1787
BstNSI	RCATGY	1 cut(s)	1506
BstSCI	CCNGG	5 cut(s)	81, 141, 152, 842, 1785
BstSNI	TACGTA	1 cut(s)	1868
BstV1I	GCAGC	5 cut(s)	19, 295, 607, 1446, 1628
BstV2I	GAAGAC	2 cut(s)	1185, 1331
BstXI	CCANNNNNNTGG	1 cut(s)	2063
BsuRI	GGCC	5 cut(s)	680, 770, 1451, 1511, 1663
BtgI	CCRYGG	2 cut(s)	511, 2025
BtgZI	GCGATG	1 cut(s)	1511
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	8 cut(s)	168, 292, 451, 730, 999, 1256, 1462, 2035
BtsIMutI	CAGTG	3 cut(s)	801, 864, 1147
Cac8I	GCNNGC	2 cut(s)	108, 189
CaiI	CAGNNNCTG	3 cut(s)	88, 739, 866
CciI	TCATGA	1 cut(s)	1761
Cfr10I	RCCGGY	1 cut(s)	1451
Cfr13I	GGNCC	4 cut(s)	474, 529, 1697, 1913
Csp6I	GTAC	5 cut(s)	79, 396, 433, 608, 1609
CspCI	CAANNNNNGTGG	2 cut(s)	1423, 1458
CviQI	GTAC	5 cut(s)	79, 396, 433, 608, 1609
DdeI	CTNAG	4 cut(s)	89, 198, 693, 813
DpnI	GATC	6 cut(s)	450, 459, 594, 1110, 1139, 1983
DpnII	GATC	6 cut(s)	448, 457, 592, 1108, 1137, 1981
DraI	TTTAAA	1 cut(s)	1237
DrdI	GACNNNNNNGTC	2 cut(s)	132, 694
DseDI	GACNNNNNNGTC	2 cut(s)	132, 694
Eam1104I	CTCTTC	5 cut(s)	143, 166, 267, 1096, 1162
EarI	CTCTTC	5 cut(s)	143, 166, 267, 1096, 1162
EciI	GGCGGA	1 cut(s)	1321
Ecl136II	GAGCTC	1 cut(s)	159
Eco105I	TACGTA	1 cut(s)	1868
Eco130I	CCWWGG	3 cut(s)	511, 765, 2025
Eco24I	GRGCYC	3 cut(s)	60, 161, 819
Eco31I	GGTCTC	2 cut(s)	140, 992
Eco47I	GGWCC	4 cut(s)	474, 529, 1697, 1913
Eco53kI	GAGCTC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	777, 1560, 1964
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	159
EcoO109I	RGGNCCY	2 cut(s)	474, 529
EcoRII	CCWGG	3 cut(s)	81, 842, 1785
EcoT14I	CCWWGG	3 cut(s)	511, 765, 2025
EcoT22I	ATGCAT	1 cut(s)	1417
EcoT38I	GRGCYC	3 cut(s)	60, 161, 819
ErhI	CCWWGG	3 cut(s)	511, 765, 2025
Esp3I	CGTCTC	1 cut(s)	184
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	3 cut(s)	136, 487, 1410
FauNDI	CATATG	1 cut(s)	1969
FbaI	TGATCA	2 cut(s)	1137, 1981
FblI	GTMKAC	2 cut(s)	888, 1476
Fnu4HI	GCNGC	6 cut(s)	33, 309, 621, 678, 1460, 1642
FokI	GGATG	8 cut(s)	155, 299, 458, 737, 1006, 1263, 1449, 2042
FriOI	GRGCYC	3 cut(s)	60, 161, 819
Fsp4HI	GCNGC	6 cut(s)	33, 309, 621, 678, 1460, 1642
FspBI	CTAG	4 cut(s)	1016, 1467, 1659, 1685
GluI	GCNGC	6 cut(s)	33, 309, 621, 678, 1460, 1642
GsaI	CCCAGC	1 cut(s)	2059
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	5 cut(s)	680, 770, 1451, 1511, 1663
HapII	CCGG	5 cut(s)	117, 143, 154, 1452, 1508
HincII	GTYRAC	1 cut(s)	1900
HindII	GTYRAC	1 cut(s)	1900
HindIII	AAGCTT	2 cut(s)	1756, 1946
HinfI	GANTC	5 cut(s)	403, 688, 806, 1616, 1844
HpaII	CCGG	5 cut(s)	117, 143, 154, 1452, 1508
HphI	GGTGA	7 cut(s)	106, 602, 889, 1277, 1423, 1645, 1703
Hpy166II	GTNNAC	3 cut(s)	889, 1477, 1900
Hpy188I	TCNGA	3 cut(s)	29, 1701, 1713
Hpy188III	TCNNGA	6 cut(s)	739, 755, 1762, 1781, 1889, 1916
Hpy8I	GTNNAC	3 cut(s)	889, 1477, 1900
Hpy99I	CGWCG	4 cut(s)	22, 40, 43, 134
HpyAV	CCTTC	8 cut(s)	69, 366, 488, 520, 808, 1522, 1588, 1904
HpyCH4III	ACNGT	4 cut(s)	432, 541, 834, 868
HpyCH4IV	ACGT	5 cut(s)	129, 364, 1423, 1867, 1933
HpyCH4V	TGCA	9 cut(s)	191, 206, 860, 1084, 1415, 1445, 1462, 1991, 1999
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 41, 55, 193, 620, 1016, 1508, 1650
HpyF3I	CTNAG	4 cut(s)	89, 198, 693, 813
HpySE526I	ACGT	5 cut(s)	129, 364, 1423, 1867, 1933
KflI	GGGWCCC	1 cut(s)	474
KpnI	GGTACC	1 cut(s)	82
Ksp22I	TGATCA	2 cut(s)	1137, 1981
Kzo9I	GATC	6 cut(s)	448, 457, 592, 1108, 1137, 1981
LguI	GCTCTTC	1 cut(s)	166
Lsp1109I	GCAGC	5 cut(s)	19, 295, 607, 1446, 1628
LweI	GCATC	3 cut(s)	277, 561, 1471
MaeI	CTAG	4 cut(s)	1016, 1467, 1659, 1685
MaeII	ACGT	5 cut(s)	129, 364, 1423, 1867, 1933
MaeIII	GTNAC	6 cut(s)	760, 862, 922, 1241, 1633, 1934
MalI	GATC	6 cut(s)	450, 459, 594, 1110, 1139, 1983
MbiI	CCGCTC	1 cut(s)	1583
MboI	GATC	6 cut(s)	448, 457, 592, 1108, 1137, 1981
MboII	GAAGA	9 cut(s)	130, 153, 284, 535, 993, 1113, 1179, 1190, 1336
MhlI	GDGCHC	4 cut(s)	51, 60, 161, 819
MluCI	AATT	9 cut(s)	468, 855, 1062, 1152, 1183, 1199, 1357, 1816, 2041
MlyI	GAGTC	1 cut(s)	682
Mph1103I	ATGCAT	1 cut(s)	1417
MroXI	GAANNNNTTC	1 cut(s)	1884
MseI	TTAA	8 cut(s)	267, 281, 534, 597, 1065, 1236, 1485, 1569
MspCI	CTTAAG	2 cut(s)	533, 1568
MspI	CCGG	5 cut(s)	117, 143, 154, 1452, 1508
MspR9I	CCNGG	5 cut(s)	83, 143, 154, 844, 1787
MvaI	CCWGG	3 cut(s)	83, 844, 1787
MwoI	GCNNNNNNNGC	8 cut(s)	29, 41, 55, 193, 620, 1016, 1508, 1650
NciI	CCSGG	2 cut(s)	143, 154
NcoI	CCATGG	2 cut(s)	511, 2025
NdeI	CATATG	1 cut(s)	1969
NdeII	GATC	6 cut(s)	448, 457, 592, 1108, 1137, 1981
NlaIV	GGNNCC	7 cut(s)	57, 80, 475, 476, 583, 942, 1926
NmuCI	GTSAC	2 cut(s)	862, 1633
NsiI	ATGCAT	1 cut(s)	1417
NspI	RCATGY	1 cut(s)	1506
PagI	TCATGA	1 cut(s)	1761
PciSI	GCTCTTC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	1884
PfeI	GAWTC	4 cut(s)	403, 806, 1616, 1844
PfoI	TCCNGGA	1 cut(s)	152
PkrI	GCNGC	6 cut(s)	34, 310, 622, 679, 1461, 1643
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
Ppu21I	YACGTR	1 cut(s)	1868
PpuMI	RGGWCCY	2 cut(s)	474, 529
PsiI	TTATAA	2 cut(s)	1628, 1815
Psp124BI	GAGCTC	1 cut(s)	161
Psp5II	RGGWCCY	2 cut(s)	474, 529
Psp6I	CCWGG	3 cut(s)	81, 842, 1785
PspFI	CCCAGC	1 cut(s)	2055
PspGI	CCWGG	3 cut(s)	81, 842, 1785
PspN4I	GGNNCC	7 cut(s)	57, 80, 475, 476, 583, 942, 1926
PspPI	GGNCC	4 cut(s)	474, 529, 1697, 1913
PspPPI	RGGWCCY	2 cut(s)	474, 529
PsrI	GAACNNNNNNTAC	2 cut(s)	1539, 1571
PstNI	CAGNNNCTG	3 cut(s)	88, 739, 866
RsaI	GTAC	5 cut(s)	80, 397, 434, 609, 1610
RsaNI	GTAC	5 cut(s)	79, 396, 433, 608, 1609
SacI	GAGCTC	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	8 cut(s)	267, 281, 534, 597, 1065, 1236, 1485, 1569
SatI	GCNGC	6 cut(s)	33, 309, 621, 678, 1460, 1642
Sau3AI	GATC	6 cut(s)	448, 457, 592, 1108, 1137, 1981
Sau96I	GGNCC	4 cut(s)	474, 529, 1697, 1913
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	5 cut(s)	83, 143, 154, 844, 1787
SduI	GDGCHC	4 cut(s)	51, 60, 161, 819
SfaNI	GCATC	3 cut(s)	277, 561, 1471
SinI	GGWCC	4 cut(s)	474, 529, 1697, 1913
SmlI	CTYRAG	3 cut(s)	533, 945, 1568
SmoI	CTYRAG	3 cut(s)	533, 945, 1568
SnaBI	TACGTA	1 cut(s)	1868
SpeI	ACTAGT	1 cut(s)	1684
Sse9I	AATT	9 cut(s)	468, 855, 1062, 1152, 1183, 1199, 1357, 1816, 2041
SsiI	CCGC	7 cut(s)	44, 214, 677, 1213, 1306, 1583, 2038
SspI	AATATT	3 cut(s)	958, 1133, 1390
SspMI	CTAG	4 cut(s)	1016, 1467, 1659, 1685
SstI	GAGCTC	1 cut(s)	161
StyD4I	CCNGG	5 cut(s)	81, 141, 152, 842, 1785
StyI	CCWWGG	3 cut(s)	511, 765, 2025
TaaI	ACNGT	4 cut(s)	432, 541, 834, 868
TaiI	ACGT	5 cut(s)	132, 367, 1426, 1870, 1936
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	9 cut(s)	468, 855, 1062, 1152, 1183, 1199, 1357, 1816, 2041
TatI	WGTACW	3 cut(s)	432, 607, 1608
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	4 cut(s)	403, 806, 1616, 1844
Tru1I	TTAA	8 cut(s)	267, 281, 534, 597, 1065, 1236, 1485, 1569
Tru9I	TTAA	8 cut(s)	267, 281, 534, 597, 1065, 1236, 1485, 1569
TscAI	CASTG	3 cut(s)	808, 871, 1147
TseFI	GTSAC	2 cut(s)	862, 1633
TseI	GCWGC	5 cut(s)	32, 308, 620, 1459, 1641
Tsp45I	GTSAC	2 cut(s)	862, 1633
TspGWI	ACGGA	2 cut(s)	299, 383
TspRI	CASTG	3 cut(s)	808, 871, 1147
Vha464I	CTTAAG	2 cut(s)	533, 1568
VpaK11BI	GGWCC	4 cut(s)	474, 529, 1697, 1913
XapI	RAATTY	1 cut(s)	1199
XceI	RCATGY	1 cut(s)	1506
XmiI	GTMKAC	2 cut(s)	888, 1476
XmnI	GAANNNNTTC	1 cut(s)	1884
XspI	CTAG	4 cut(s)	1016, 1467, 1659, 1685
Zsp2I	ATGCAT	1 cut(s)	1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.