Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011058

Physical Location & Seq

Genomic Coordinates Reverse (-)

49918377 .. 49923172

Gene Structure 4796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG381600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGACGACGACGACTGCGACGGCGGCGGCGTTCGGAACTGCGACGACGGCGGTGCTCCGGGAGCCTAAGGTGGAGATTGGAAGGTACCAGGGGCTGAGGTCAGCAAACTCGCTCGCTCTCACCGCCGGAGGAAGACACGTCACTCTCTTCAACGCTTCGTCTCGGAGCTCCTCTCTCATTCGAGCCGTCTCTACGCCCGCAAAGCCTGAGACTGCGACAAAGCGTAGCAAGGTTGAAATTTTCAAAGAACAGAGCAACTTCATTAGATACCCGCTTAATGAAGAGATTTTGACAGATGCCCCCAATATAAACGAAGCTGCTACCCAACTCATCAAGTTTCATGGGAGCTACCAACAGTACAACCGAGATGAACGTGGTGGAAGGTCTTACTCGTTTATGCTTCGTACCAAGAATCCTTGTGGGAAAGTGTCAAACCAACTATACTTGACCATGGATGATCTTGCCGATCAGTTTGGAATTGGGACCCTCCGTTTGACCACCAGACAAACATTTCAGCTCCATGGTGTTCTGAAGAAGGACCTTAAGACAGTAATGGGTAGCATCATTAGAAGCATGGGTTCAACTCTTGGTGCCTGTGGTGATCTTAATAGGAACGTCCTTGCTCCTGCTGCTCCACTACTAAGAAAAGATTACCTTTTCGCACAAAAGACAGCAGAGAACATTGCGGCCCTGCTGACTCCTCAGTCTGGTTTTTACTATGATGTATGGGTGGATGGAGAGCAGTTCCTGACAGCAGAACCTCCTGAAGTAACCAAGGCCAGAAATGATAACTCTAATGGAAAAACCTTCACTGATTCCCCCGAGCCCATCTATGGAACTCAGTTCTTGCCCAGGAAGTTCAAAATTGCAGTCACTGTGCCAACAGATAACTCGGTGGATATTCTGACAAATGATATTGGTGTTGTGGTTGTTACTGATGATAATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGTATGGGAAGGACACATAGGTTGGAGTCCACATTTGCCCGTCTGGCGGAACCATTGGGTTATGTTCCCAAAGAGGATATTCTAAAAGCAATTAAGTCTATTGTAGAAGTTCAACGAGATCACGGCAGAAGAGATGATCGTAAGTATAGTAGAATGAAATATTTGATAAGTGACTGGGGGATTGAAAAGTTTAGAAGAGAACTTGAAGACAATTATTACCAAAAGAAATTTGAGCCATTCCGCAAGTTGCCAGAGTGGGAGTTTAAAAGTTACTTGGGATGGCACGAACAGGGTGATGGCAGTTTATTCTGTGGGCTTCATGTTGATAATGGGCGTATTGGGGGAAAGATGAAGAAGGCATTACGAGAGGTTATATCAAAGTATAATTTGAGTATAAGGCTCACACCCAACCAGAATATTATATTGTGTGATATTCGCAATGCATGGAAACGTCCCATCACAACAACTCTTGCACAGGCCGGTCTGCTGCATCCTAGGTATGTAGACCCCCTTAACCAAACTGCGATGGCATGTCCAGCCTTCCCTCTATGCCCATTGGCAATAACTGAAGCTGAACGGGGAATACCTGACATTCTTAAGCGAGTTCGAGCGGTATTTGAGAAGGTTGGTCTAAAGTACAATGAATCTGTTGTTATAAGGGTGACTGGCTGCCCCAACGGTTGTGCTAGGCCATACATGGCTGAACTTGGACTAGTGGGTGATGGTCCCAACAGCTATCAGATATGGCTTGGAGGAACACCCAATCAAACCTCAATAGCAAAAACCTTCATGAACAAGGTCAAGGTTCAAGACCTGGAAAAAGTTTTTGAACCTTTATTTTATCATTGGAAACGCAAGCGACAAGCTAAAGAATCATTCGGCGACTTCACAATACGTATGGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGAGGTGGCACCAACACGTTACAACCTGAAGCTTTTTGCTGATAAGGAGACGTATGAAGCAGTTGATGAACTTGCAAAGTTGCAGGGCAAGAGTGCTCATCAGTTAGCCATGGAAGTCATCCGCAATTTTGTTGCTTCCCAGCAAAATGGGAAAAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006275 GO:0006323 GO:0006355 GO:0006790 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009295 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009941 GO:0009987 GO:0010319 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016002 GO:0016020 GO:0016043 GO:0016491 GO:0016667 GO:0016673 GO:0019219 GO:0019222 GO:0019418 GO:0019419 GO:0019424 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031967 GO:0031975 GO:0036385 GO:0042644 GO:0042646 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0048523 GO:0050311 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055114 GO:0060255 GO:0065007 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:1900160 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

NIR_SIR NIR_SIR_ferr

Protein Analysis

695

Amino Acids

78.12

Weight (kDa)

9.24

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIR_SIR_ferr	PF03460	131 - 185	2.8e-14	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	228 - 402	1e-43	Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR_ferr	PF03460	422 - 475	1.5e-11	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	501 - 638	1.3e-10	Nitrite and sulphite reductase 4Fe-4S domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04590
fragaria_vesca	FvH4_3g28720 FvH4_3g28720 FvH4_3g28720 FvH4_3g28720
malus_domestica	MD03G1173800.v1.1 MD11G1192000.v1.1
prunus_persica	Prupe.4G250500_v2.0.a1
pyrus_communis	pycom03g13140 pycom11g16770
rosa_chinensis	RchiOBHm_Chr5g0052341
rosa_laevigata	RLG00000034823
rosa_multiflora	Rmu_sc0000968.1_g000009
rosa_roxburghii	Rroxscaffold_1G00028250
rosa_rugosa	Rorug05G0272600
rosa_samantha	Rh5AG345200 Rh5BG356300 Rh5CG381600 Rh5DG371400
rosa_wichuraiana	Rw5G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1637
AasI	GACNNNNNNGTC	1 cut(s)	703
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	3 cut(s)	84, 590, 1933
AccBSI	CCGCTC	1 cut(s)	1592
AccI	GTMKAC	1 cut(s)	1485
AcsI	RAATTY	2 cut(s)	237, 1208
AcuI	CTGAAG	4 cut(s)	551, 786, 1569, 1973
AfaI	GTAC	4 cut(s)	86, 359, 406, 1619
AfiI	CCNNNNNNNGG	3 cut(s)	707, 833, 1027
AflII	CTTAAG	2 cut(s)	542, 1577
AflIII	ACRYGT	2 cut(s)	136, 1940
AhlI	ACTAGT	1 cut(s)	1693
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	3 cut(s)	87, 851, 1794
AluBI	AGCT	8 cut(s)	168, 317, 348, 517, 1553, 1716, 1847, 1957
AluI	AGCT	8 cut(s)	168, 317, 348, 517, 1553, 1716, 1847, 1957
Alw21I	GWGCWC	3 cut(s)	57, 170, 2023
Alw26I	GTCTC	4 cut(s)	165, 193, 203, 1967
AlwNI	CAGNNNCTG	3 cut(s)	94, 748, 875
Ama87I	CYCGRG	1 cut(s)	821
AoxI	GGCC	4 cut(s)	687, 777, 1458, 1670
ApeKI	GCWGC	4 cut(s)	317, 629, 1468, 1650
ApoI	RAATTY	2 cut(s)	237, 1208
ArsI	GACNNNNNNTTYG	4 cut(s)	475, 507, 855, 887
Asp718I	GGTACC	1 cut(s)	84
AspA2I	CCTAGG	1 cut(s)	1475
AspS9I	GGNCC	5 cut(s)	483, 538, 688, 1706, 1922
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	5 cut(s)	112, 611, 1286, 1654, 1712
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	4 cut(s)	483, 538, 1706, 1922
AvrII	CCTAGG	1 cut(s)	1475
AxyI	CCTNAGG	1 cut(s)	66
BanI	GGYRCC	3 cut(s)	84, 590, 1933
BanII	GRGCYC	2 cut(s)	170, 828
BbsI	GAAGAC	2 cut(s)	139, 1194
Bbv12I	GWGCWC	3 cut(s)	57, 170, 2023
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	4 cut(s)	304, 616, 1455, 1637
BccI	CCATC	7 cut(s)	728, 836, 1254, 1271, 1445, 1501, 1697
BceAI	ACGGC	4 cut(s)	36, 63, 170, 1120
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	3 cut(s)	89, 853, 1796
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	4 cut(s)	165, 193, 203, 1967
BcuI	ACTAGT	1 cut(s)	1693
BfaI	CTAG	3 cut(s)	1476, 1668, 1694
BfrI	CTTAAG	2 cut(s)	542, 1577
BglI	GCCNNNNNGGC	1 cut(s)	1025
BisI	GCNGC	7 cut(s)	24, 27, 318, 630, 687, 1469, 1651
BlnI	CCTAGG	1 cut(s)	1475
BlsI	GCNGC	7 cut(s)	25, 28, 319, 631, 688, 1470, 1652
Bme1390I	CCNGG	4 cut(s)	59, 89, 853, 1796
Bme18I	GGWCC	4 cut(s)	483, 538, 1706, 1922
BmeT110I	CYCGRG	1 cut(s)	821
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	5 cut(s)	483, 538, 688, 1706, 1922
BmiI	GGNNCC	9 cut(s)	63, 86, 484, 485, 592, 951, 1032, 1708, 1935
BmrFI	CCNGG	4 cut(s)	59, 89, 853, 1796
BmrI	ACTGGG	1 cut(s)	1165
BmsI	GCATC	3 cut(s)	286, 570, 1480
BmuI	ACTGGG	1 cut(s)	1165
BpiI	GAAGAC	2 cut(s)	139, 1194
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	939
BpuMI	CCSGG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	1877
BsaJI	CCNNGG	7 cut(s)	88, 450, 520, 774, 851, 1475, 2034
Bsc4I	CCNNNNNNNGG	3 cut(s)	707, 833, 1027
Bse118I	RCCGGY	1 cut(s)	1460
Bse1I	ACTGG	2 cut(s)	1160, 1651
Bse21I	CCTNAGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	681, 1426
BseBI	CCWGG	3 cut(s)	89, 853, 1796
BseDI	CCNNGG	7 cut(s)	88, 450, 520, 774, 851, 1475, 2034
BseGI	GGATG	5 cut(s)	460, 739, 1265, 1471, 2043
BseLI	CCNNNNNNNGG	3 cut(s)	707, 833, 1027
BseMI	GCAATG	2 cut(s)	681, 1426
BseMII	CTCAG	4 cut(s)	86, 198, 716, 854
BseNI	ACTGG	2 cut(s)	1160, 1651
BseRI	GAGGAG	2 cut(s)	160, 690
BseXI	GCAGC	4 cut(s)	304, 616, 1455, 1637
BseYI	CCCAGC	1 cut(s)	2064
BshFI	GGCC	4 cut(s)	689, 779, 1460, 1672
BshNI	GGYRCC	3 cut(s)	84, 590, 1933
BsiHKAI	GWGCWC	3 cut(s)	57, 170, 2023
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	3 cut(s)	58, 126, 1461
BslFI	GGGAC	3 cut(s)	496, 1419, 1692
BslI	CCNNNNNNNGG	3 cut(s)	707, 833, 1027
BsmAI	GTCTC	4 cut(s)	165, 193, 203, 1967
BsmBI	CGTCTC	3 cut(s)	165, 193, 1967
BsmFI	GGGAC	3 cut(s)	496, 1419, 1692
BsnI	GGCC	4 cut(s)	689, 779, 1460, 1672
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	4 cut(s)	57, 170, 828, 2023
Bsp143I	GATC	5 cut(s)	457, 466, 601, 1099, 1117
Bsp19I	CCATGG	3 cut(s)	450, 520, 2034
BspANI	GGCC	4 cut(s)	689, 779, 1460, 1672
BspCNI	CTCAG	4 cut(s)	87, 199, 715, 853
BspHI	TCATGA	1 cut(s)	1770
BspLI	GGNNCC	9 cut(s)	63, 86, 484, 485, 592, 951, 1032, 1708, 1935
BspT107I	GGYRCC	3 cut(s)	84, 590, 1933
BspTI	CTTAAG	2 cut(s)	542, 1577
BsrBI	CCGCTC	1 cut(s)	1592
BsrDI	GCAATG	2 cut(s)	681, 1426
BsrFI	RCCGGY	1 cut(s)	1460
BsrI	ACTGG	2 cut(s)	1160, 1651
BssAI	RCCGGY	1 cut(s)	1460
BssECI	CCNNGG	7 cut(s)	88, 450, 520, 774, 851, 1475, 2034
BssMI	GATC	5 cut(s)	457, 466, 601, 1099, 1117
BssT1I	CCWWGG	5 cut(s)	450, 520, 774, 1475, 2034
Bst2UI	CCWGG	3 cut(s)	89, 853, 1796
Bst4CI	ACNGT	4 cut(s)	357, 550, 877, 1661
Bst6I	CTCTTC	4 cut(s)	152, 276, 1105, 1171
BstAFI	CTTAAG	2 cut(s)	542, 1577
BstBAI	YACGTR	1 cut(s)	1877
BstC8I	GCNNGC	3 cut(s)	114, 198, 1838
BstDEI	CTNAG	6 cut(s)	66, 95, 207, 641, 702, 840
BstDSI	CCRYGG	3 cut(s)	450, 520, 2034
BstF5I	GGATG	5 cut(s)	460, 739, 1265, 1471, 2043
BstKTI	GATC	5 cut(s)	460, 469, 604, 1102, 1120
BstMAI	GTCTC	4 cut(s)	165, 193, 203, 1967
BstMBI	GATC	5 cut(s)	457, 466, 601, 1099, 1117
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 47, 61, 122, 202, 629, 1025, 1517
BstNI	CCWGG	3 cut(s)	89, 853, 1796
BstNSI	RCATGY	1 cut(s)	1515
BstSCI	CCNGG	4 cut(s)	57, 87, 851, 1794
BstSNI	TACGTA	1 cut(s)	1877
BstV1I	GCAGC	4 cut(s)	304, 616, 1455, 1637
BstV2I	GAAGAC	2 cut(s)	139, 1194
BstXI	CCANNNNNNTGG	1 cut(s)	2072
Bsu36I	CCTNAGG	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	689, 779, 1460, 1672
BtgI	CCRYGG	3 cut(s)	450, 520, 2034
BtgZI	GCGATG	1 cut(s)	1520
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	5 cut(s)	460, 739, 1265, 1471, 2043
BtsIMutI	CAGTG	2 cut(s)	810, 873
Cac8I	GCNNGC	3 cut(s)	114, 198, 1838
CaiI	CAGNNNCTG	3 cut(s)	94, 748, 875
CciI	TCATGA	1 cut(s)	1770
Cfr10I	RCCGGY	1 cut(s)	1460
Cfr13I	GGNCC	5 cut(s)	483, 538, 688, 1706, 1922
Csp6I	GTAC	4 cut(s)	85, 358, 405, 1618
CviQI	GTAC	4 cut(s)	85, 358, 405, 1618
DdeI	CTNAG	6 cut(s)	66, 95, 207, 641, 702, 840
DpnI	GATC	5 cut(s)	459, 468, 603, 1101, 1119
DpnII	GATC	5 cut(s)	457, 466, 601, 1099, 1117
DraI	TTTAAA	1 cut(s)	1246
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	4 cut(s)	152, 276, 1105, 1171
EarI	CTCTTC	4 cut(s)	152, 276, 1105, 1171
EciI	GGCGGA	1 cut(s)	1043
Ecl136II	GAGCTC	1 cut(s)	168
Eco105I	TACGTA	1 cut(s)	1877
Eco130I	CCWWGG	5 cut(s)	450, 520, 774, 1475, 2034
Eco24I	GRGCYC	2 cut(s)	170, 828
Eco47I	GGWCC	4 cut(s)	483, 538, 1706, 1922
Eco53kI	GAGCTC	1 cut(s)	168
Eco57I	CTGAAG	4 cut(s)	551, 786, 1569, 1973
Eco81I	CCTNAGG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	821
EcoICRI	GAGCTC	1 cut(s)	168
EcoO109I	RGGNCCY	2 cut(s)	483, 538
EcoRII	CCWGG	3 cut(s)	87, 851, 1794
EcoT14I	CCWWGG	5 cut(s)	450, 520, 774, 1475, 2034
EcoT22I	ATGCAT	1 cut(s)	1426
EcoT38I	GRGCYC	2 cut(s)	170, 828
ErhI	CCWWGG	5 cut(s)	450, 520, 774, 1475, 2034
Esp3I	CGTCTC	3 cut(s)	165, 193, 1967
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	3 cut(s)	496, 1419, 1692
FauI	CCCGC	2 cut(s)	205, 279
FblI	GTMKAC	1 cut(s)	1485
Fnu4HI	GCNGC	7 cut(s)	24, 27, 318, 630, 687, 1469, 1651
FokI	GGATG	5 cut(s)	467, 746, 1272, 1458, 2030
FriOI	GRGCYC	2 cut(s)	170, 828
Fsp4HI	GCNGC	7 cut(s)	24, 27, 318, 630, 687, 1469, 1651
FspBI	CTAG	3 cut(s)	1476, 1668, 1694
GluI	GCNGC	7 cut(s)	24, 27, 318, 630, 687, 1469, 1651
GsaI	CCCAGC	1 cut(s)	2068
HaeIII	GGCC	4 cut(s)	689, 779, 1460, 1672
HapII	CCGG	3 cut(s)	58, 126, 1461
HincII	GTYRAC	1 cut(s)	1909
HindII	GTYRAC	1 cut(s)	1909
HindIII	AAGCTT	1 cut(s)	1955
HinfI	GANTC	6 cut(s)	412, 697, 815, 1007, 1625, 1853
HpaII	CCGG	3 cut(s)	58, 126, 1461
HphI	GGTGA	5 cut(s)	112, 611, 1286, 1654, 1712
Hpy166II	GTNNAC	3 cut(s)	1011, 1486, 1909
Hpy188I	TCNGA	5 cut(s)	35, 165, 531, 906, 1722
Hpy188III	TCNNGA	6 cut(s)	748, 764, 1771, 1790, 1898, 1925
Hpy8I	GTNNAC	3 cut(s)	1011, 1486, 1909
Hpy99I	CGWCG	5 cut(s)	10, 13, 22, 46, 49
HpyCH4III	ACNGT	4 cut(s)	357, 550, 877, 1661
HpyCH4IV	ACGT	7 cut(s)	138, 373, 615, 1432, 1876, 1942, 1976
HpyCH4V	TGCA	6 cut(s)	869, 1424, 1454, 1471, 2000, 2008
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 47, 61, 122, 202, 629, 1025, 1517
HpyF3I	CTNAG	6 cut(s)	66, 95, 207, 641, 702, 840
HpySE526I	ACGT	7 cut(s)	138, 373, 615, 1432, 1876, 1942, 1976
KflI	GGGWCCC	1 cut(s)	483
KpnI	GGTACC	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	457, 466, 601, 1099, 1117
LmnI	GCTCC	9 cut(s)	60, 61, 165, 173, 345, 522, 628, 637, 949
Lsp1109I	GCAGC	4 cut(s)	304, 616, 1455, 1637
LweI	GCATC	3 cut(s)	286, 570, 1480
MaeI	CTAG	3 cut(s)	1476, 1668, 1694
MaeII	ACGT	7 cut(s)	138, 373, 615, 1432, 1876, 1942, 1976
MaeIII	GTNAC	8 cut(s)	139, 769, 871, 931, 1151, 1250, 1642, 1943
MalI	GATC	5 cut(s)	459, 468, 603, 1101, 1119
MbiI	CCGCTC	1 cut(s)	1592
MboI	GATC	5 cut(s)	457, 466, 601, 1099, 1117
MboII	GAAGA	8 cut(s)	139, 144, 293, 544, 1122, 1188, 1199, 1345
MhlI	GDGCHC	4 cut(s)	57, 170, 828, 2023
MluCI	AATT	8 cut(s)	237, 477, 864, 1071, 1192, 1208, 1366, 2050
MlyI	GAGTC	2 cut(s)	691, 1016
MmeI	TCCRAC	1 cut(s)	984
Mph1103I	ATGCAT	1 cut(s)	1426
MseI	TTAA	7 cut(s)	276, 543, 606, 1074, 1245, 1494, 1578
MspCI	CTTAAG	2 cut(s)	542, 1577
MspI	CCGG	3 cut(s)	58, 126, 1461
MspR9I	CCNGG	4 cut(s)	59, 89, 853, 1796
MvaI	CCWGG	3 cut(s)	89, 853, 1796
MwoI	GCNNNNNNNGC	8 cut(s)	23, 47, 61, 122, 202, 629, 1025, 1517
NciI	CCSGG	1 cut(s)	59
NcoI	CCATGG	3 cut(s)	450, 520, 2034
NdeII	GATC	5 cut(s)	457, 466, 601, 1099, 1117
NlaIV	GGNNCC	9 cut(s)	63, 86, 484, 485, 592, 951, 1032, 1708, 1935
NmuCI	GTSAC	4 cut(s)	139, 871, 1151, 1642
NsiI	ATGCAT	1 cut(s)	1426
NspI	RCATGY	1 cut(s)	1515
PagI	TCATGA	1 cut(s)	1770
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 26
PfeI	GAWTC	4 cut(s)	412, 815, 1625, 1853
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	7 cut(s)	25, 28, 319, 631, 688, 1470, 1652
PleI	GAGTC	2 cut(s)	691, 1015
PpsI	GAGTC	2 cut(s)	691, 1015
Ppu21I	YACGTR	1 cut(s)	1877
PpuMI	RGGWCCY	2 cut(s)	483, 538
PsiI	TTATAA	1 cut(s)	1637
Psp124BI	GAGCTC	1 cut(s)	170
Psp5II	RGGWCCY	2 cut(s)	483, 538
Psp6I	CCWGG	3 cut(s)	87, 851, 1794
PspFI	CCCAGC	1 cut(s)	2064
PspGI	CCWGG	3 cut(s)	87, 851, 1794
PspN4I	GGNNCC	9 cut(s)	63, 86, 484, 485, 592, 951, 1032, 1708, 1935
PspPI	GGNCC	5 cut(s)	483, 538, 688, 1706, 1922
PspPPI	RGGWCCY	2 cut(s)	483, 538
PsrI	GAACNNNNNNTAC	2 cut(s)	1548, 1580
PstNI	CAGNNNCTG	3 cut(s)	94, 748, 875
RsaI	GTAC	4 cut(s)	86, 359, 406, 1619
RsaNI	GTAC	4 cut(s)	85, 358, 405, 1618
SacI	GAGCTC	1 cut(s)	170
SaqAI	TTAA	7 cut(s)	276, 543, 606, 1074, 1245, 1494, 1578
SatI	GCNGC	7 cut(s)	24, 27, 318, 630, 687, 1469, 1651
Sau3AI	GATC	5 cut(s)	457, 466, 601, 1099, 1117
Sau96I	GGNCC	5 cut(s)	483, 538, 688, 1706, 1922
SchI	GAGTC	2 cut(s)	691, 1016
ScrFI	CCNGG	4 cut(s)	59, 89, 853, 1796
SduI	GDGCHC	4 cut(s)	57, 170, 828, 2023
SfaNI	GCATC	3 cut(s)	286, 570, 1480
SinI	GGWCC	4 cut(s)	483, 538, 1706, 1922
SmlI	CTYRAG	3 cut(s)	542, 954, 1577
SmoI	CTYRAG	3 cut(s)	542, 954, 1577
SnaBI	TACGTA	1 cut(s)	1877
SpeI	ACTAGT	1 cut(s)	1693
Sse9I	AATT	8 cut(s)	237, 477, 864, 1071, 1192, 1208, 1366, 2050
SspI	AATATT	2 cut(s)	1142, 1399
SspMI	CTAG	3 cut(s)	1476, 1668, 1694
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	4 cut(s)	57, 87, 851, 1794
StyI	CCWWGG	5 cut(s)	450, 520, 774, 1475, 2034
TaaI	ACNGT	4 cut(s)	357, 550, 877, 1661
TaiI	ACGT	7 cut(s)	141, 376, 618, 1435, 1879, 1945, 1979
TaqI	TCGA	2 cut(s)	181, 1588
TasI	AATT	8 cut(s)	237, 477, 864, 1071, 1192, 1208, 1366, 2050
TatI	WGTACW	2 cut(s)	357, 1617
TauI	GCSGC	3 cut(s)	26, 29, 689
TfiI	GAWTC	4 cut(s)	412, 815, 1625, 1853
Tru1I	TTAA	7 cut(s)	276, 543, 606, 1074, 1245, 1494, 1578
Tru9I	TTAA	7 cut(s)	276, 543, 606, 1074, 1245, 1494, 1578
TscAI	CASTG	2 cut(s)	817, 880
TseFI	GTSAC	4 cut(s)	139, 871, 1151, 1642
TseI	GCWGC	4 cut(s)	317, 629, 1468, 1650
Tsp45I	GTSAC	4 cut(s)	139, 871, 1151, 1642
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	817, 880
Vha464I	CTTAAG	2 cut(s)	542, 1577
VpaK11BI	GGWCC	4 cut(s)	483, 538, 1706, 1922
XapI	RAATTY	2 cut(s)	237, 1208
XceI	RCATGY	1 cut(s)	1515
XmaJI	CCTAGG	1 cut(s)	1475
XmiI	GTMKAC	1 cut(s)	1485
XspI	CTAG	3 cut(s)	1476, 1668, 1694
Zsp2I	ATGCAT	1 cut(s)	1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.