Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011058

Physical Location & Seq

Genomic Coordinates Reverse (-)

23775559 .. 23779564

Gene Structure 4006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1173800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGACGACGACGCCGTTCGGAGGTGCGAACACGGCGGTTCTGGGGGAGCCGAAGGTGCAGATTGGGAGGTACCAGGGGCTGCGCTCAACAAACTCGCTTGGCCTCACCAGAAGCCGACACGTGCCTCTCTCCTCCTTTTCTTCCTCTTCGCTCATTCGAGCCGTCGCTACGCCGGCAAAGCCTGAGACGAAGCGGAGTAAGGTTGAGATATTCAAAGAACAGAGCAATTTCATACGATACCCTCTTGATGAAGAGATTTTGACGGATGCCCCGAACATTAATGAGGCTGCTACACAACTCATTAAGTTCCATGGGAGTTATCAACAATATAACCGAGATGAACGTGGTGGAAGGTCCTACTCGTTTATGCTTCGTACCAAAAACCCTTGTGGGAAAGTGTCAAACCAACTGTACTTGACCATGGATGATCTTGCCGATCAGTTTGGAATTGGTACCCTTCGTTTGACCACCAGACAGACGTTTCAGCTCCATGGGGTTCTGAAAAAGGATCTAAAGACTGTAATGAGTAGTATCATTAGAAGCATGGGTTCAACTCTTGGCGCCTGTGGCGATCTTAACAGAAACGTTCTTGCTCCTCCCGCTCCAATACAAAGAAAGGATTACCTTTGTGCACAGCAGACTGCAGAGAACATTGCAGCATTGCTGACTCCACAGTCTGGATTTTACTATGATGTGTGGGTGGATGGAGAGAAGTTCCTGACCGCAGAGCCTCCTGAAGTAACAAAGGCCCGCAATGATAATACTCATGGAACAAACTTCCCTGATTCACCCGAGCCCATTTATGGAACTCAGTTCTTGCCCAGGAAGTTTAAAGTTGCAGTTACGGTGCCAACAGACAACTCGGTGGATATTCTCACAAATGATATTGGTGTTGTGGTTGTTACTGATGATAACGGGGAGCCTCAAGGGTTCAACCTATATGTTGGTGGTGGTATGGGAAGGACACATAGGATGGAATCCACTTTTCCCCGTCTGGCTGAGCCATTGGGTTATGTCCCTAAAGAGGATATCCTATATGCCATTAAGGCTATAGTTGTTACACAACGTGAAAATGGGAGAAGAGATGATCGGAGGTATAGTAGAATGAAATATTTGATCAGCTCATGGGGGATTGAAAAGTTCAGAAGTGTAGTGGAACAGTATTACGGAAAGAAATTTGAGCCTTTCCGTGAGTTGCCGGAGTGGGAATTCAAAGGTCACTTGGGATGGCACAAGCAGGGTGACGGCAGTTATTATTGTGGGCTTCATGTCGATAATGGTCGGATTGGGGGAGTTATGAAGCAGGCATTAAGAGAGGTTATAGAAAAGTATAACTTGAGTGTAAGGCTCACACCCAACCAGAACATCATATTATGTGATATTCGCAGTGCATGGAAGCGTCCCATCACCACAGTTCTTGCAAAAGCCGGGCTGCTGCATCCTAGGTTTGTAGACCCCCTCAACTTAACTGCCATGGCATGCCCAGCCTTCCCACTATGCCCACTGGCAATAACTGAAGCTGAACGAGGTATACCTGACATTCTTAAGCGGGTTCGAGCAGTATTTGAGAAGGTTGGTCTGAAGTACAATGAATCACTAGTTATAAGGATTACTGGATGCCCTAATGGTTGTGCTAGGCCATACATGGCTGAACTTGGACTAGTTGGTGATGGTCCAAATAGCTATCAGATCTGGCTTGGAGGAACACCCAATCAAACCTCAATCGCAAAATCCTTCATGAACAAGGTCAAGGTTCAAGACCTTGAAAAGGTTTTCGAACCTTTGTTTTATTACTGGAAACGTAAACGACAATCTAAAGAGTCATTCGGCGACTTCACAAACCGCTTGGGATTTGAAAAACTTCAAGAGTTGGTTAACAAATGGGAAGGGCCAGAGGCGTCACCAGCACGTTACAACTTGAAACTTTTTGCTGATAAGGAGACGTATGAAGCTGTGGATGAGCTTGCAAAGCTGCAGAATAAGAATGCTCACCAGTTAGCAATGGAAGTTATTCGCAATTTTGTTGTTTCCCAGAAAAATGGGAAAAGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006275 GO:0006323 GO:0006355 GO:0006790 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009295 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009941 GO:0009987 GO:0010319 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016002 GO:0016020 GO:0016043 GO:0016491 GO:0016667 GO:0016673 GO:0019219 GO:0019222 GO:0019418 GO:0019419 GO:0019424 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031967 GO:0031975 GO:0036385 GO:0042644 GO:0042646 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0048523 GO:0050311 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055114 GO:0060255 GO:0065007 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:1900160 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

NIR_SIR NIR_SIR_ferr

Protein Analysis

685

Amino Acids

77.06

Weight (kDa)

9.26

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIR_SIR_ferr	PF03460	121 - 176	1.5e-14	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	218 - 393	2.6e-42	Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR_ferr	PF03460	411 - 463	2.9e-12	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	490 - 627	5.8e-11	Nitrite and sulphite reductase 4Fe-4S domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04590
fragaria_vesca	FvH4_3g28720 FvH4_3g28720 FvH4_3g28720 FvH4_3g28720
malus_domestica	MD03G1173800.v1.1 MD11G1192000.v1.1
prunus_persica	Prupe.4G250500_v2.0.a1
pyrus_communis	pycom03g13140 pycom11g16770
rosa_chinensis	RchiOBHm_Chr5g0052341
rosa_laevigata	RLG00000034823
rosa_multiflora	Rmu_sc0000968.1_g000009
rosa_roxburghii	Rroxscaffold_1G00028250
rosa_rugosa	Rorug05G0272600
rosa_samantha	Rh5AG345200 Rh5BG356300 Rh5CG381600 Rh5DG371400
rosa_wichuraiana	Rw5G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1604
AasI	GACNNNNNNGTC	1 cut(s)	673
Acc65I	GGTACC	2 cut(s)	69, 452
AccB1I	GGYRCC	4 cut(s)	69, 452, 560, 847
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccBSI	CCGCTC	1 cut(s)	602
AccI	GTMKAC	2 cut(s)	1452, 1531
AciI	CCGC	7 cut(s)	35, 193, 600, 723, 751, 1549, 1843
AclI	AACGTT	1 cut(s)	585
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	1175, 1208
AcuI	CTGAAG	3 cut(s)	756, 1536, 1601
AcvI	CACGTG	1 cut(s)	121
AcyI	GRCGYC	3 cut(s)	11, 561, 1898
AdeI	CACNNNGTG	1 cut(s)	1067
AfaI	GTAC	5 cut(s)	71, 376, 413, 454, 1586
AfiI	CCNNNNNNNGG	5 cut(s)	20, 677, 803, 1024, 1768
AflII	CTTAAG	1 cut(s)	1544
AflIII	ACRYGT	1 cut(s)	118
AhlI	ACTAGT	2 cut(s)	1597, 1660
AjnI	CCWGG	2 cut(s)	72, 821
AluBI	AGCT	7 cut(s)	487, 1122, 1520, 1683, 1952, 1963, 1972
AluI	AGCT	7 cut(s)	487, 1122, 1520, 1683, 1952, 1963, 1972
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	2 cut(s)	179, 1934
Alw44I	GTGCAC	1 cut(s)	630
AlwI	GGATC	1 cut(s)	516
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	791
AoxI	GGCC	4 cut(s)	100, 747, 1637, 1889
ApaLI	GTGCAC	1 cut(s)	630
ApeKI	GCWGC	6 cut(s)	79, 287, 656, 1432, 1435, 1972
ApoI	RAATTY	2 cut(s)	1175, 1208
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	2 cut(s)	1860, 2010
Asp718I	GGTACC	2 cut(s)	69, 452
AspA2I	CCTAGG	1 cut(s)	1442
AspLEI	GCGC	2 cut(s)	84, 563
AspS9I	GGNCC	4 cut(s)	354, 748, 1673, 1889
AsuC2I	CCSGG	1 cut(s)	1429
AsuHPI	GGTGA	7 cut(s)	97, 780, 1253, 1399, 1679, 1893, 1982
AsuII	TTCGAA	1 cut(s)	1776
AvaI	CYCGRG	1 cut(s)	791
AvaII	GGWCC	2 cut(s)	354, 1673
AvrII	CCTAGG	1 cut(s)	1442
BaeGI	GKGCMC	1 cut(s)	634
BanI	GGYRCC	4 cut(s)	69, 452, 560, 847
BanII	GRGCYC	1 cut(s)	798
BbrPI	CACGTG	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	6 cut(s)	66, 274, 668, 1419, 1422, 1959
BccI	CCATC	5 cut(s)	698, 967, 1221, 1412, 1664
BceAI	ACGGC	3 cut(s)	48, 146, 1261
BciT130I	CCWGG	2 cut(s)	74, 823
BclI	TGATCA	1 cut(s)	1116
BcnI	CCSGG	1 cut(s)	1429
BcoDI	GTCTC	2 cut(s)	179, 1934
BcuI	ACTAGT	2 cut(s)	1597, 1660
BfaI	CTAG	4 cut(s)	1443, 1598, 1635, 1661
BfmI	CTRYAG	3 cut(s)	642, 1050, 1973
BfoI	RGCGCY	1 cut(s)	564
BfrI	CTTAAG	1 cut(s)	1544
BglI	GCCNNNNNGGC	1 cut(s)	1046
BglII	AGATCT	1 cut(s)	1689
BisI	GCNGC	6 cut(s)	80, 288, 657, 1433, 1436, 1973
BlnI	CCTAGG	1 cut(s)	1442
BlpI	GCTNAGC	1 cut(s)	999
BlsI	GCNGC	6 cut(s)	81, 289, 658, 1434, 1437, 1974
Bme1390I	CCNGG	3 cut(s)	74, 823, 1429
Bme18I	GGWCC	2 cut(s)	354, 1673
BmeT110I	CYCGRG	1 cut(s)	791
BmgT120I	GGNCC	4 cut(s)	354, 748, 1673, 1889
BmiI	GGNNCC	6 cut(s)	48, 71, 454, 562, 849, 921
BmrFI	CCNGG	3 cut(s)	74, 823, 1429
BmsI	GCATC	3 cut(s)	256, 1447, 1607
Bpu1102I	GCTNAGC	1 cut(s)	999
Bpu14I	TTCGAA	1 cut(s)	1776
BpuEI	CTTGAG	2 cut(s)	909, 1357
BpuMI	CCSGG	1 cut(s)	1429
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	3 cut(s)	11, 561, 1898
BsaJI	CCNNGG	7 cut(s)	73, 310, 420, 490, 821, 1442, 1473
BsaXI	ACNNNNNCTCC	2 cut(s)	1084, 1114
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 677, 803, 1024, 1768
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	4 cut(s)	1509, 1618, 1799, 1993
Bse3DI	GCAATG	4 cut(s)	651, 659, 760, 2007
BseBI	CCWGG	2 cut(s)	74, 823
BseDI	CCNNGG	7 cut(s)	73, 310, 420, 490, 821, 1442, 1473
BseGI	GGATG	8 cut(s)	271, 430, 709, 978, 1232, 1438, 1622, 1963
BseLI	CCNNNNNNNGG	5 cut(s)	20, 677, 803, 1024, 1768
BseMI	GCAATG	4 cut(s)	651, 659, 760, 2007
BseMII	CTCAG	3 cut(s)	174, 824, 990
BseNI	ACTGG	4 cut(s)	1509, 1618, 1799, 1993
BseRI	GAGGAG	2 cut(s)	121, 585
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	6 cut(s)	66, 274, 668, 1419, 1422, 1959
BseYI	CCCAGC	1 cut(s)	1483
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	4 cut(s)	102, 749, 1639, 1891
BshNI	GGYRCC	4 cut(s)	69, 452, 560, 847
BsiHKAI	GWGCWC	1 cut(s)	634
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	3 cut(s)	173, 1199, 1428
BslFI	GGGAC	2 cut(s)	1001, 1386
BslI	CCNNNNNNNGG	5 cut(s)	20, 677, 803, 1024, 1768
BsmAI	GTCTC	2 cut(s)	179, 1934
BsmBI	CGTCTC	2 cut(s)	179, 1934
BsmFI	GGGAC	2 cut(s)	1001, 1386
BsmI	GAATGC	1 cut(s)	1990
BsnI	GGCC	4 cut(s)	102, 749, 1639, 1891
BsoBI	CYCGRG	1 cut(s)	791
Bsp119I	TTCGAA	1 cut(s)	1776
Bsp1286I	GDGCHC	2 cut(s)	634, 798
Bsp143I	GATC	7 cut(s)	427, 436, 508, 571, 1087, 1116, 1689
Bsp1720I	GCTNAGC	1 cut(s)	999
Bsp19I	CCATGG	4 cut(s)	310, 420, 490, 1473
BspACI	CCGC	7 cut(s)	35, 193, 600, 723, 751, 1549, 1843
BspANI	GGCC	4 cut(s)	102, 749, 1639, 1891
BspCNI	CTCAG	3 cut(s)	175, 823, 991
BspHI	TCATGA	1 cut(s)	1737
BspLI	GGNNCC	6 cut(s)	48, 71, 454, 562, 849, 921
BspMAI	CTGCAG	2 cut(s)	646, 1977
BspPI	GGATC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	1776
BspT107I	GGYRCC	4 cut(s)	69, 452, 560, 847
BspTI	CTTAAG	1 cut(s)	1544
BsrBI	CCGCTC	1 cut(s)	602
BsrDI	GCAATG	4 cut(s)	651, 659, 760, 2007
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	4 cut(s)	1509, 1618, 1799, 1993
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	7 cut(s)	73, 310, 420, 490, 821, 1442, 1473
BssMI	GATC	7 cut(s)	427, 436, 508, 571, 1087, 1116, 1689
BssNAI	GTATAC	1 cut(s)	1532
BssNI	GRCGYC	3 cut(s)	11, 561, 1898
BssT1I	CCWWGG	5 cut(s)	310, 420, 490, 1442, 1473
Bst1107I	GTATAC	1 cut(s)	1532
Bst2UI	CCWGG	2 cut(s)	74, 823
Bst4CI	ACNGT	6 cut(s)	411, 520, 675, 847, 1161, 1414
Bst6I	CTCTTC	3 cut(s)	151, 246, 1075
BstACI	GRCGYC	3 cut(s)	11, 561, 1898
BstAFI	CTTAAG	1 cut(s)	1544
BstBAI	YACGTR	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	1776
BstC8I	GCNNGC	5 cut(s)	174, 751, 1305, 1480, 1965
BstDEI	CTNAG	3 cut(s)	183, 810, 999
BstDSI	CCRYGG	4 cut(s)	310, 420, 490, 1473
BstENI	CCTNNNNNAGG	1 cut(s)	1766
BstF5I	GGATG	8 cut(s)	271, 430, 709, 978, 1232, 1438, 1622, 1963
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	2 cut(s)	84, 563
BstKTI	GATC	7 cut(s)	430, 439, 511, 574, 1090, 1119, 1692
BstMAI	GTCTC	2 cut(s)	179, 1934
BstMBI	GATC	7 cut(s)	427, 436, 508, 571, 1087, 1116, 1689
BstNI	CCWGG	2 cut(s)	74, 823
BstNSI	RCATGY	1 cut(s)	1482
BstSCI	CCNGG	3 cut(s)	72, 821, 1427
BstSFI	CTRYAG	3 cut(s)	642, 1050, 1973
BstSLI	GKGCMC	1 cut(s)	634
BstV1I	GCAGC	6 cut(s)	66, 274, 668, 1419, 1422, 1959
BstX2I	RGATCY	2 cut(s)	508, 1689
BstXI	CCANNNNNNTGG	1 cut(s)	2039
BstYI	RGATCY	2 cut(s)	508, 1689
BstZ17I	GTATAC	1 cut(s)	1532
BsuRI	GGCC	4 cut(s)	102, 749, 1639, 1891
BtgI	CCRYGG	4 cut(s)	310, 420, 490, 1473
BtsCI	GGATG	8 cut(s)	271, 430, 709, 978, 1232, 1438, 1622, 1963
BtsI	GCAGTG	1 cut(s)	1393
BtsIMutI	CAGTG	2 cut(s)	1393, 1502
Cac8I	GCNNGC	5 cut(s)	174, 751, 1305, 1480, 1965
CaiI	CAGNNNCTG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	1737
CfoI	GCGC	2 cut(s)	84, 563
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	4 cut(s)	354, 748, 1673, 1889
CseI	GACGC	3 cut(s)	19, 1388, 1887
Csp6I	GTAC	5 cut(s)	70, 375, 412, 453, 1585
CspCI	CAANNNNNGTGG	2 cut(s)	1399, 1434
CviQI	GTAC	5 cut(s)	70, 375, 412, 453, 1585
DdeI	CTNAG	3 cut(s)	183, 810, 999
DinI	GGCGCC	1 cut(s)	562
DpnI	GATC	7 cut(s)	429, 438, 510, 573, 1089, 1118, 1691
DpnII	GATC	7 cut(s)	427, 436, 508, 571, 1087, 1116, 1689
DraI	TTTAAA	1 cut(s)	832
DraIII	CACNNNGTG	1 cut(s)	1067
DrdI	GACNNNNNNGTC	1 cut(s)	673
DseDI	GACNNNNNNGTC	1 cut(s)	673
Eam1104I	CTCTTC	3 cut(s)	151, 246, 1075
EarI	CTCTTC	3 cut(s)	151, 246, 1075
Eco130I	CCWWGG	5 cut(s)	310, 420, 490, 1442, 1473
Eco24I	GRGCYC	1 cut(s)	798
Eco32I	GATATC	1 cut(s)	1030
Eco47I	GGWCC	2 cut(s)	354, 1673
Eco57I	CTGAAG	3 cut(s)	756, 1536, 1601
Eco72I	CACGTG	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	791
EcoNI	CCTNNNNNAGG	1 cut(s)	1766
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	1208
EcoRII	CCWGG	2 cut(s)	72, 821
EcoRV	GATATC	1 cut(s)	1030
EcoT14I	CCWWGG	5 cut(s)	310, 420, 490, 1442, 1473
EcoT38I	GRGCYC	1 cut(s)	798
EgeI	GGCGCC	1 cut(s)	562
EheI	GGCGCC	1 cut(s)	562
ErhI	CCWWGG	5 cut(s)	310, 420, 490, 1442, 1473
Esp3I	CGTCTC	2 cut(s)	179, 1934
FalI	AAGNNNNNCTT	2 cut(s)	1319, 1351
FaqI	GGGAC	2 cut(s)	1001, 1386
FauI	CCCGC	3 cut(s)	607, 758, 1542
FbaI	TGATCA	1 cut(s)	1116
FblI	GTMKAC	2 cut(s)	1452, 1531
Fnu4HI	GCNGC	6 cut(s)	80, 288, 657, 1433, 1436, 1973
FokI	GGATG	8 cut(s)	278, 437, 716, 985, 1239, 1425, 1629, 1970
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	6 cut(s)	80, 288, 657, 1433, 1436, 1973
FspBI	CTAG	4 cut(s)	1443, 1598, 1635, 1661
GlaI	GCGC	2 cut(s)	83, 562
GluI	GCNGC	6 cut(s)	80, 288, 657, 1433, 1436, 1973
GsaI	CCCAGC	1 cut(s)	1487
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	4 cut(s)	102, 749, 1639, 1891
HapII	CCGG	3 cut(s)	173, 1199, 1428
HgaI	GACGC	3 cut(s)	19, 1388, 1887
HhaI	GCGC	2 cut(s)	84, 563
Hin1I	GRCGYC	3 cut(s)	11, 561, 1898
Hin6I	GCGC	2 cut(s)	82, 561
HinP1I	GCGC	2 cut(s)	82, 561
HincII	GTYRAC	1 cut(s)	1876
HindII	GTYRAC	1 cut(s)	1876
HinfI	GANTC	5 cut(s)	667, 785, 977, 1592, 1820
HpaI	GTTAAC	1 cut(s)	1876
HpaII	CCGG	3 cut(s)	173, 1199, 1428
HphI	GGTGA	7 cut(s)	97, 780, 1253, 1399, 1679, 1893, 1982
Hpy166II	GTNNAC	5 cut(s)	632, 1453, 1532, 1805, 1876
Hpy188I	TCNGA	7 cut(s)	20, 501, 1092, 1145, 1284, 1581, 1689
Hpy188III	TCNNGA	7 cut(s)	245, 678, 718, 734, 1738, 1757, 1865
Hpy8I	GTNNAC	5 cut(s)	632, 1453, 1532, 1805, 1876
Hpy99I	CGWCG	3 cut(s)	10, 13, 167
HpyAV	CCTTC	8 cut(s)	46, 345, 467, 954, 1498, 1564, 1744, 1880
HpyCH4III	ACNGT	6 cut(s)	411, 520, 675, 847, 1161, 1414
HpyCH4IV	ACGT	8 cut(s)	120, 343, 479, 585, 1066, 1801, 1909, 1943
HpyF3I	CTNAG	3 cut(s)	183, 810, 999
HpySE526I	ACGT	8 cut(s)	120, 343, 479, 585, 1066, 1801, 1909, 1943
Hsp92I	GRCGYC	3 cut(s)	11, 561, 1898
HspAI	GCGC	2 cut(s)	82, 561
KasI	GGCGCC	1 cut(s)	560
KpnI	GGTACC	2 cut(s)	73, 456
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	1116
KspAI	GTTAAC	1 cut(s)	1876
Kzo9I	GATC	7 cut(s)	427, 436, 508, 571, 1087, 1116, 1689
LmnI	GCTCC	5 cut(s)	46, 492, 598, 607, 919
Lsp1109I	GCAGC	6 cut(s)	66, 274, 668, 1419, 1422, 1959
LweI	GCATC	3 cut(s)	256, 1447, 1607
MaeI	CTAG	4 cut(s)	1443, 1598, 1635, 1661
MaeII	ACGT	8 cut(s)	120, 343, 479, 585, 1066, 1801, 1909, 1943
MaeIII	GTNAC	8 cut(s)	739, 841, 901, 1057, 1217, 1241, 1899, 1910
MalI	GATC	7 cut(s)	429, 438, 510, 573, 1089, 1118, 1691
MbiI	CCGCTC	1 cut(s)	602
MboI	GATC	7 cut(s)	427, 436, 508, 571, 1087, 1116, 1689
MboII	GAAGA	4 cut(s)	132, 138, 263, 1092
MflI	RGATCY	2 cut(s)	508, 1689
MhlI	GDGCHC	2 cut(s)	634, 798
MluCI	AATT	5 cut(s)	226, 447, 1175, 1208, 2017
Mly113I	GGCGCC	1 cut(s)	561
MlyI	GAGTC	2 cut(s)	661, 1829
MmeI	TCCRAC	1 cut(s)	1262
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	2 cut(s)	1860, 2010
MseI	TTAA	9 cut(s)	279, 303, 576, 831, 1044, 1310, 1466, 1545, 1875
MspCI	CTTAAG	1 cut(s)	1544
MspI	CCGG	3 cut(s)	173, 1199, 1428
MspR9I	CCNGG	3 cut(s)	74, 823, 1429
Mva1269I	GAATGC	1 cut(s)	1990
MvaI	CCWGG	2 cut(s)	74, 823
NaeI	GCCGGC	1 cut(s)	174
NarI	GGCGCC	1 cut(s)	561
NciI	CCSGG	1 cut(s)	1429
NcoI	CCATGG	4 cut(s)	310, 420, 490, 1473
NdeII	GATC	7 cut(s)	427, 436, 508, 571, 1087, 1116, 1689
NgoMIV	GCCGGC	1 cut(s)	172
NlaIV	GGNNCC	6 cut(s)	48, 71, 454, 562, 849, 921
NmuCI	GTSAC	3 cut(s)	1217, 1241, 1899
NspI	RCATGY	1 cut(s)	1482
NspV	TTCGAA	1 cut(s)	1776
PaeI	GCATGC	1 cut(s)	1482
PagI	TCATGA	1 cut(s)	1737
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 269
PctI	GAATGC	1 cut(s)	1990
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	2 cut(s)	1860, 2010
PfeI	GAWTC	3 cut(s)	785, 977, 1592
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	6 cut(s)	81, 289, 658, 1434, 1437, 1974
PleI	GAGTC	2 cut(s)	661, 1828
PluTI	GGCGCC	1 cut(s)	564
PmaCI	CACGTG	1 cut(s)	121
PmlI	CACGTG	1 cut(s)	121
PpsI	GAGTC	2 cut(s)	661, 1828
Ppu21I	YACGTR	1 cut(s)	121
PpuMI	RGGWCCY	1 cut(s)	354
PshBI	ATTAAT	1 cut(s)	279
PsiI	TTATAA	1 cut(s)	1604
Psp1406I	AACGTT	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	72, 821
PspCI	CACGTG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	1483
PspGI	CCWGG	2 cut(s)	72, 821
PspN4I	GGNNCC	6 cut(s)	48, 71, 454, 562, 849, 921
PspPI	GGNCC	4 cut(s)	354, 748, 1673, 1889
PspPPI	RGGWCCY	1 cut(s)	354
PsrI	GAACNNNNNNTAC	2 cut(s)	1515, 1547
PstI	CTGCAG	2 cut(s)	646, 1977
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	2 cut(s)	508, 1689
RsaI	GTAC	5 cut(s)	71, 376, 413, 454, 1586
RsaNI	GTAC	5 cut(s)	70, 375, 412, 453, 1585
SaqAI	TTAA	9 cut(s)	279, 303, 576, 831, 1044, 1310, 1466, 1545, 1875
SatI	GCNGC	6 cut(s)	80, 288, 657, 1433, 1436, 1973
Sau3AI	GATC	7 cut(s)	427, 436, 508, 571, 1087, 1116, 1689
Sau96I	GGNCC	4 cut(s)	354, 748, 1673, 1889
SchI	GAGTC	2 cut(s)	661, 1829
ScrFI	CCNGG	3 cut(s)	74, 823, 1429
SduI	GDGCHC	2 cut(s)	634, 798
SfaNI	GCATC	3 cut(s)	256, 1447, 1607
SfcI	CTRYAG	3 cut(s)	642, 1050, 1973
SfoI	GGCGCC	1 cut(s)	562
SfuI	TTCGAA	1 cut(s)	1776
SinI	GGWCC	2 cut(s)	354, 1673
SmlI	CTYRAG	3 cut(s)	924, 1336, 1544
SmoI	CTYRAG	3 cut(s)	924, 1336, 1544
SpeI	ACTAGT	2 cut(s)	1597, 1660
SphI	GCATGC	1 cut(s)	1482
Sse9I	AATT	5 cut(s)	226, 447, 1175, 1208, 2017
SsiI	CCGC	7 cut(s)	35, 193, 600, 723, 751, 1549, 1843
SspDI	GGCGCC	1 cut(s)	560
SspI	AATATT	1 cut(s)	1112
SspMI	CTAG	4 cut(s)	1443, 1598, 1635, 1661
StyD4I	CCNGG	3 cut(s)	72, 821, 1427
StyI	CCWWGG	5 cut(s)	310, 420, 490, 1442, 1473
TaaI	ACNGT	6 cut(s)	411, 520, 675, 847, 1161, 1414
TaiI	ACGT	8 cut(s)	123, 346, 482, 588, 1069, 1804, 1912, 1946
TaqI	TCGA	4 cut(s)	157, 1272, 1555, 1776
TasI	AATT	5 cut(s)	226, 447, 1175, 1208, 2017
TatI	WGTACW	2 cut(s)	411, 1584
TfiI	GAWTC	3 cut(s)	785, 977, 1592
Tru1I	TTAA	9 cut(s)	279, 303, 576, 831, 1044, 1310, 1466, 1545, 1875
Tru9I	TTAA	9 cut(s)	279, 303, 576, 831, 1044, 1310, 1466, 1545, 1875
TscAI	CASTG	2 cut(s)	1393, 1509
TseFI	GTSAC	3 cut(s)	1217, 1241, 1899
TseI	GCWGC	6 cut(s)	79, 287, 656, 1432, 1435, 1972
Tsp45I	GTSAC	3 cut(s)	1217, 1241, 1899
TspGWI	ACGGA	3 cut(s)	278, 1178, 1182
TspRI	CASTG	2 cut(s)	1393, 1509
Van91I	CCANNNNNTGG	1 cut(s)	677
Vha464I	CTTAAG	1 cut(s)	1544
VneI	GTGCAC	1 cut(s)	630
VpaK11BI	GGWCC	2 cut(s)	354, 1673
VspI	ATTAAT	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	1766
XapI	RAATTY	2 cut(s)	1175, 1208
XceI	RCATGY	1 cut(s)	1482
XmaJI	CCTAGG	1 cut(s)	1442
XmiI	GTMKAC	2 cut(s)	1452, 1531
XmnI	GAANNNNTTC	2 cut(s)	1860, 2010
XspI	CTAG	4 cut(s)	1443, 1598, 1635, 1661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.