Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011058

Physical Location & Seq

Genomic Coordinates Forward (+)

54118706 .. 54125608

Gene Structure 6903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGACGACGACGACTGCGACGGCGGCGGCGGTGCTCCGGGAGCCTAAGGTGGAGATTGGAAGGTACCAGGGGCTGAGGTCAGCAAACTCGCTCGCTCTCACCGCCGGAGGAAGACACGTCACTCTCTTCAACGCTTCGTCTCGGAGCTCCTCTCTCATTCGAGCCGTCTCTACGCCCGCAAAGCCTGAGACTGTGACAAAGCGTAGCAAGGTTGAAATATTCAAAGAACAGAGCAACTTCATTAGATACCCGCTTAATGAAGAGATTTTGACAGATACCCCCAATATAAACGAAGCTGCTACCCAACTCATCAAGTTTCATGGGAGCTACCAACAGTACAACCGAGATGAACGTGGTGGAAGGTCTTACTCGTTTATGCTTCGTACCAAGAATCCTTGTGGGAAAGTGTCAAACCAACTATACTTGACCATGGATGATCTTGCCGATCAGTTCGGAATTGGGACCCTTCGTTTGACCACCAGACAAACATTTCAGCTCCATGGTGTTCTGAAGAAGGACCTTAAGACAGTAATGAGTAGCATCATTAGAAGCATGGGTTCAACTCTTGGTGCCTGTGGTGATCTTAATAGGAACGTCCTTGCTCCTGCTGCTCCACTACTAAGAAAAGATTACCTTTTCGCACAGAAGACAGCAGAGAACATTGCGGCCCTGCTGACTCCTCAGTCTGGTTTTTACTATGATGTATGGGTGGATGGAGAGCAGTTCCTGACAGCAGAACCTCCTGAAGTAACCAAGGTCAGAAACGATAACTCTAACGGAAAAACCTTCACTGATTCCCCCGAGCCCATCTATGGAACTCAGTTCTTGCCCAGGAAGTTCAAAATTGCAGTCACTGTGCCAACAGATAACTCGGTGGATATTCTGACAAATGATATTGGTGTTGTGGTTGTTACTGATGATAATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGTATGGGAAGGACACATAGGTTGGAGTCCACATTTGCCCGTCTGGCGGAACCATTGGGTTATGTTCCCAAAGAGGATATTCTAAAAGCAATTAAGTCTATTGTAGAAGTTCAACGAGATCACGGCAGAAGAGATGATCGTAAGTATAGTAGAATGAAATATTTGATAAGTGACTGGGGGATTGAAAAGTTTAGAAGAGAACTTGAAGACAATTATTACCAAAAGAAATTTGAGCCATTCCGCAAGTTGCCAGAGTGGGAGTTTAAAAGTTACTTGGGATGGCACGAACAGGGTGATGGCAGTTTATTCTGTGGGCTTCATGTTGATAATGGGCGTATTGGGGGAAAGATGAAGAAGGCATTACGAGAGGTTATATCAAAGTATAATTTGAGTATAAGGCTCACACCCAACCAGAATATTATATTGTGTGATATTCGCAATGCATGGAAACGTCCCATCACAACAACTCTTGCACAGGCCGGTCTGCTGCATCCTAGGTATGTAGACCCCCTTAACCAAACTGCGATGGCATGTCCAGCCTTCCCTCTATGCCCATTGGCAATAACTGAAGCTGAACGGGGAATACCTGACATTCTTAAGCGAGTTCGAGCGGTATTTGAGAAGGTTGGTCTAAAGTACAATGAATCTGTTGTTATAAGGGTGACTGGCTGCCCCAACGGTTGTGCTAGGCCATACATGGCTGAACTTGGACTAGTGGGTGATGGTCCCAACAGCTATCAGATATGGCTTGGAGGAACACCCAATCAAACCTCAATAGCAAAAACCTTCATGAACAAGGTCAAGGTTCAAGACCTGGAAAAAGTTTTTGAACCTTTATTTTATCATTGGAAACGCAAGCGACAAGCTAAAGAATCATTCGGCGACTTCACAATACGTATGGGTTTTGAGAAACTTCAAGTGTTGGTTGACAAATGGGAAGGTCCAGAGGTGGCACCAACACGTTACAACCTGAAGCTTTTTGCTGATAAGGAGACGTATGAAGCAGTTGATGAACTTGCAAAGTTGCAGGGCAAGAGTGCTCATCAGTTAGCCATGGAAGTCATCCGCAATTTTGTTGCTTCCCAGCAAAATGGGAAAAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006275 GO:0006323 GO:0006355 GO:0006790 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009295 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009941 GO:0009987 GO:0010319 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016002 GO:0016020 GO:0016043 GO:0016491 GO:0016667 GO:0016673 GO:0019219 GO:0019222 GO:0019418 GO:0019419 GO:0019424 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031967 GO:0031975 GO:0036385 GO:0042644 GO:0042646 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0048523 GO:0050311 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055114 GO:0060255 GO:0065007 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:1900160 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

NIR_SIR NIR_SIR_ferr

Protein Analysis

688

Amino Acids

77.56

Weight (kDa)

9.27

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIR_SIR_ferr	PF03460	124 - 179	1.5e-14	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	221 - 395	9.8e-44	Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR_ferr	PF03460	415 - 468	1.5e-11	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	494 - 630	1.3e-09	Nitrite and sulphite reductase 4Fe-4S domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04590
fragaria_vesca	FvH4_3g28720 FvH4_3g28720 FvH4_3g28720 FvH4_3g28720
malus_domestica	MD03G1173800.v1.1 MD11G1192000.v1.1
prunus_persica	Prupe.4G250500_v2.0.a1
pyrus_communis	pycom03g13140 pycom11g16770
rosa_chinensis	RchiOBHm_Chr5g0052341
rosa_laevigata	RLG00000034823
rosa_multiflora	Rmu_sc0000968.1_g000009
rosa_roxburghii	Rroxscaffold_1G00028250
rosa_rugosa	Rorug05G0272600
rosa_samantha	Rh5AG345200 Rh5BG356300 Rh5CG381600 Rh5DG371400
rosa_wichuraiana	Rw5G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1616
AasI	GACNNNNNNGTC	1 cut(s)	682
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	3 cut(s)	63, 569, 1912
AccBSI	CCGCTC	1 cut(s)	1571
AccI	GTMKAC	1 cut(s)	1464
AcsI	RAATTY	1 cut(s)	1187
AcuI	CTGAAG	4 cut(s)	530, 765, 1548, 1952
AfaI	GTAC	4 cut(s)	65, 338, 385, 1598
AfiI	CCNNNNNNNGG	3 cut(s)	686, 812, 1006
AflII	CTTAAG	2 cut(s)	521, 1556
AflIII	ACRYGT	2 cut(s)	115, 1919
AhlI	ACTAGT	1 cut(s)	1672
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	3 cut(s)	66, 830, 1773
AluBI	AGCT	8 cut(s)	147, 296, 327, 496, 1532, 1695, 1826, 1936
AluI	AGCT	8 cut(s)	147, 296, 327, 496, 1532, 1695, 1826, 1936
Alw21I	GWGCWC	3 cut(s)	36, 149, 2002
Alw26I	GTCTC	4 cut(s)	144, 172, 182, 1946
AlwNI	CAGNNNCTG	3 cut(s)	73, 727, 854
Ama87I	CYCGRG	1 cut(s)	800
AoxI	GGCC	3 cut(s)	666, 1437, 1649
ApeKI	GCWGC	4 cut(s)	296, 608, 1447, 1629
ApoI	RAATTY	1 cut(s)	1187
ArsI	GACNNNNNNTTYG	4 cut(s)	454, 486, 834, 866
Asp718I	GGTACC	1 cut(s)	63
AspA2I	CCTAGG	1 cut(s)	1454
AspS9I	GGNCC	5 cut(s)	462, 517, 667, 1685, 1901
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	5 cut(s)	91, 590, 1265, 1633, 1691
AvaI	CYCGRG	1 cut(s)	800
AvaII	GGWCC	4 cut(s)	462, 517, 1685, 1901
AvrII	CCTAGG	1 cut(s)	1454
AxyI	CCTNAGG	1 cut(s)	45
BanI	GGYRCC	3 cut(s)	63, 569, 1912
BanII	GRGCYC	2 cut(s)	149, 807
BbsI	GAAGAC	3 cut(s)	118, 653, 1173
Bbv12I	GWGCWC	3 cut(s)	36, 149, 2002
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	283, 595, 1434, 1616
BccI	CCATC	7 cut(s)	707, 815, 1233, 1250, 1424, 1480, 1676
BceAI	ACGGC	3 cut(s)	36, 149, 1099
BciT130I	CCWGG	3 cut(s)	68, 832, 1775
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	4 cut(s)	144, 172, 182, 1946
BcuI	ACTAGT	1 cut(s)	1672
BfaI	CTAG	3 cut(s)	1455, 1647, 1673
BfrI	CTTAAG	2 cut(s)	521, 1556
BglI	GCCNNNNNGGC	1 cut(s)	1004
BisI	GCNGC	7 cut(s)	24, 27, 297, 609, 666, 1448, 1630
BlnI	CCTAGG	1 cut(s)	1454
BlsI	GCNGC	7 cut(s)	25, 28, 298, 610, 667, 1449, 1631
Bme1390I	CCNGG	4 cut(s)	38, 68, 832, 1775
Bme18I	GGWCC	4 cut(s)	462, 517, 1685, 1901
BmeT110I	CYCGRG	1 cut(s)	800
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	5 cut(s)	462, 517, 667, 1685, 1901
BmiI	GGNNCC	9 cut(s)	42, 65, 463, 464, 571, 930, 1011, 1687, 1914
BmrFI	CCNGG	4 cut(s)	38, 68, 832, 1775
BmrI	ACTGGG	1 cut(s)	1144
BmsI	GCATC	2 cut(s)	549, 1459
BmuI	ACTGGG	1 cut(s)	1144
BpiI	GAAGAC	3 cut(s)	118, 653, 1173
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	918
BpuMI	CCSGG	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	1856
BsaJI	CCNNGG	7 cut(s)	67, 429, 499, 753, 830, 1454, 2013
Bsc4I	CCNNNNNNNGG	3 cut(s)	686, 812, 1006
Bse118I	RCCGGY	1 cut(s)	1439
Bse1I	ACTGG	2 cut(s)	1139, 1630
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	660, 1405
BseBI	CCWGG	3 cut(s)	68, 832, 1775
BseDI	CCNNGG	7 cut(s)	67, 429, 499, 753, 830, 1454, 2013
BseGI	GGATG	5 cut(s)	439, 718, 1244, 1450, 2022
BseLI	CCNNNNNNNGG	3 cut(s)	686, 812, 1006
BseMI	GCAATG	2 cut(s)	660, 1405
BseMII	CTCAG	4 cut(s)	65, 177, 695, 833
BseNI	ACTGG	2 cut(s)	1139, 1630
BseRI	GAGGAG	2 cut(s)	139, 669
BseXI	GCAGC	4 cut(s)	283, 595, 1434, 1616
BseYI	CCCAGC	1 cut(s)	2043
BshFI	GGCC	3 cut(s)	668, 1439, 1651
BshNI	GGYRCC	3 cut(s)	63, 569, 1912
BsiHKAI	GWGCWC	3 cut(s)	36, 149, 2002
BsiHKCI	CYCGRG	1 cut(s)	800
BsiSI	CCGG	3 cut(s)	37, 105, 1440
BslFI	GGGAC	3 cut(s)	475, 1398, 1671
BslI	CCNNNNNNNGG	3 cut(s)	686, 812, 1006
BsmAI	GTCTC	4 cut(s)	144, 172, 182, 1946
BsmBI	CGTCTC	3 cut(s)	144, 172, 1946
BsmFI	GGGAC	3 cut(s)	475, 1398, 1671
BsnI	GGCC	3 cut(s)	668, 1439, 1651
BsoBI	CYCGRG	1 cut(s)	800
Bsp1286I	GDGCHC	4 cut(s)	36, 149, 807, 2002
Bsp143I	GATC	5 cut(s)	436, 445, 580, 1078, 1096
Bsp19I	CCATGG	3 cut(s)	429, 499, 2013
BspANI	GGCC	3 cut(s)	668, 1439, 1651
BspCNI	CTCAG	4 cut(s)	66, 178, 694, 832
BspHI	TCATGA	1 cut(s)	1749
BspLI	GGNNCC	9 cut(s)	42, 65, 463, 464, 571, 930, 1011, 1687, 1914
BspT107I	GGYRCC	3 cut(s)	63, 569, 1912
BspTI	CTTAAG	2 cut(s)	521, 1556
BsrBI	CCGCTC	1 cut(s)	1571
BsrDI	GCAATG	2 cut(s)	660, 1405
BsrFI	RCCGGY	1 cut(s)	1439
BsrI	ACTGG	2 cut(s)	1139, 1630
BssAI	RCCGGY	1 cut(s)	1439
BssECI	CCNNGG	7 cut(s)	67, 429, 499, 753, 830, 1454, 2013
BssMI	GATC	5 cut(s)	436, 445, 580, 1078, 1096
BssT1I	CCWWGG	5 cut(s)	429, 499, 753, 1454, 2013
Bst2UI	CCWGG	3 cut(s)	68, 832, 1775
Bst4CI	ACNGT	5 cut(s)	193, 336, 529, 856, 1640
Bst6I	CTCTTC	4 cut(s)	131, 255, 1084, 1150
BstAFI	CTTAAG	2 cut(s)	521, 1556
BstBAI	YACGTR	1 cut(s)	1856
BstC8I	GCNNGC	3 cut(s)	93, 177, 1817
BstDEI	CTNAG	6 cut(s)	45, 74, 186, 620, 681, 819
BstDSI	CCRYGG	3 cut(s)	429, 499, 2013
BstF5I	GGATG	5 cut(s)	439, 718, 1244, 1450, 2022
BstKTI	GATC	5 cut(s)	439, 448, 583, 1081, 1099
BstMAI	GTCTC	4 cut(s)	144, 172, 182, 1946
BstMBI	GATC	5 cut(s)	436, 445, 580, 1078, 1096
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 40, 101, 181, 608, 1004, 1496
BstNI	CCWGG	3 cut(s)	68, 832, 1775
BstNSI	RCATGY	1 cut(s)	1494
BstSCI	CCNGG	4 cut(s)	36, 66, 830, 1773
BstSNI	TACGTA	1 cut(s)	1856
BstV1I	GCAGC	4 cut(s)	283, 595, 1434, 1616
BstV2I	GAAGAC	3 cut(s)	118, 653, 1173
BstXI	CCANNNNNNTGG	1 cut(s)	2051
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	668, 1439, 1651
BtgI	CCRYGG	3 cut(s)	429, 499, 2013
BtgZI	GCGATG	1 cut(s)	1499
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	5 cut(s)	439, 718, 1244, 1450, 2022
BtsIMutI	CAGTG	2 cut(s)	789, 852
Cac8I	GCNNGC	3 cut(s)	93, 177, 1817
CaiI	CAGNNNCTG	3 cut(s)	73, 727, 854
CciI	TCATGA	1 cut(s)	1749
Cfr10I	RCCGGY	1 cut(s)	1439
Cfr13I	GGNCC	5 cut(s)	462, 517, 667, 1685, 1901
Csp6I	GTAC	4 cut(s)	64, 337, 384, 1597
CviQI	GTAC	4 cut(s)	64, 337, 384, 1597
DdeI	CTNAG	6 cut(s)	45, 74, 186, 620, 681, 819
DpnI	GATC	5 cut(s)	438, 447, 582, 1080, 1098
DpnII	GATC	5 cut(s)	436, 445, 580, 1078, 1096
DraI	TTTAAA	1 cut(s)	1225
DrdI	GACNNNNNNGTC	1 cut(s)	682
DseDI	GACNNNNNNGTC	1 cut(s)	682
Eam1104I	CTCTTC	4 cut(s)	131, 255, 1084, 1150
EarI	CTCTTC	4 cut(s)	131, 255, 1084, 1150
EciI	GGCGGA	1 cut(s)	1022
Ecl136II	GAGCTC	1 cut(s)	147
Eco105I	TACGTA	1 cut(s)	1856
Eco130I	CCWWGG	5 cut(s)	429, 499, 753, 1454, 2013
Eco24I	GRGCYC	2 cut(s)	149, 807
Eco47I	GGWCC	4 cut(s)	462, 517, 1685, 1901
Eco53kI	GAGCTC	1 cut(s)	147
Eco57I	CTGAAG	4 cut(s)	530, 765, 1548, 1952
Eco81I	CCTNAGG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	147
EcoO109I	RGGNCCY	2 cut(s)	462, 517
EcoRII	CCWGG	3 cut(s)	66, 830, 1773
EcoT14I	CCWWGG	5 cut(s)	429, 499, 753, 1454, 2013
EcoT22I	ATGCAT	1 cut(s)	1405
EcoT38I	GRGCYC	2 cut(s)	149, 807
ErhI	CCWWGG	5 cut(s)	429, 499, 753, 1454, 2013
Esp3I	CGTCTC	3 cut(s)	144, 172, 1946
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	3 cut(s)	475, 1398, 1671
FauI	CCCGC	2 cut(s)	184, 258
FblI	GTMKAC	1 cut(s)	1464
Fnu4HI	GCNGC	7 cut(s)	24, 27, 297, 609, 666, 1448, 1630
FokI	GGATG	5 cut(s)	446, 725, 1251, 1437, 2009
FriOI	GRGCYC	2 cut(s)	149, 807
Fsp4HI	GCNGC	7 cut(s)	24, 27, 297, 609, 666, 1448, 1630
FspBI	CTAG	3 cut(s)	1455, 1647, 1673
GluI	GCNGC	7 cut(s)	24, 27, 297, 609, 666, 1448, 1630
GsaI	CCCAGC	1 cut(s)	2047
HaeIII	GGCC	3 cut(s)	668, 1439, 1651
HapII	CCGG	3 cut(s)	37, 105, 1440
HincII	GTYRAC	1 cut(s)	1888
HindII	GTYRAC	1 cut(s)	1888
HindIII	AAGCTT	1 cut(s)	1934
HinfI	GANTC	6 cut(s)	391, 676, 794, 986, 1604, 1832
HpaII	CCGG	3 cut(s)	37, 105, 1440
HphI	GGTGA	5 cut(s)	91, 590, 1265, 1633, 1691
Hpy166II	GTNNAC	3 cut(s)	990, 1465, 1888
Hpy188I	TCNGA	6 cut(s)	144, 455, 510, 761, 885, 1701
Hpy188III	TCNNGA	5 cut(s)	727, 743, 1750, 1769, 1904
Hpy8I	GTNNAC	3 cut(s)	990, 1465, 1888
Hpy99I	CGWCG	3 cut(s)	10, 13, 22
HpyCH4III	ACNGT	5 cut(s)	193, 336, 529, 856, 1640
HpyCH4IV	ACGT	7 cut(s)	117, 352, 594, 1411, 1855, 1921, 1955
HpyCH4V	TGCA	6 cut(s)	848, 1403, 1433, 1450, 1979, 1987
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 40, 101, 181, 608, 1004, 1496
HpyF3I	CTNAG	6 cut(s)	45, 74, 186, 620, 681, 819
HpySE526I	ACGT	7 cut(s)	117, 352, 594, 1411, 1855, 1921, 1955
KflI	GGGWCCC	1 cut(s)	462
KpnI	GGTACC	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	436, 445, 580, 1078, 1096
LmnI	GCTCC	9 cut(s)	39, 40, 144, 152, 324, 501, 607, 616, 928
Lsp1109I	GCAGC	4 cut(s)	283, 595, 1434, 1616
LweI	GCATC	2 cut(s)	549, 1459
MaeI	CTAG	3 cut(s)	1455, 1647, 1673
MaeII	ACGT	7 cut(s)	117, 352, 594, 1411, 1855, 1921, 1955
MaeIII	GTNAC	9 cut(s)	118, 193, 748, 850, 910, 1130, 1229, 1621, 1922
MalI	GATC	5 cut(s)	438, 447, 582, 1080, 1098
MbiI	CCGCTC	1 cut(s)	1571
MboI	GATC	5 cut(s)	436, 445, 580, 1078, 1096
MboII	GAAGA	9 cut(s)	118, 123, 272, 523, 658, 1101, 1167, 1178, 1324
MhlI	GDGCHC	4 cut(s)	36, 149, 807, 2002
MluCI	AATT	7 cut(s)	456, 843, 1050, 1171, 1187, 1345, 2029
MlyI	GAGTC	2 cut(s)	670, 995
MmeI	TCCRAC	1 cut(s)	963
Mph1103I	ATGCAT	1 cut(s)	1405
MseI	TTAA	7 cut(s)	255, 522, 585, 1053, 1224, 1473, 1557
MspCI	CTTAAG	2 cut(s)	521, 1556
MspI	CCGG	3 cut(s)	37, 105, 1440
MspR9I	CCNGG	4 cut(s)	38, 68, 832, 1775
MvaI	CCWGG	3 cut(s)	68, 832, 1775
MwoI	GCNNNNNNNGC	7 cut(s)	23, 40, 101, 181, 608, 1004, 1496
NciI	CCSGG	1 cut(s)	38
NcoI	CCATGG	3 cut(s)	429, 499, 2013
NdeII	GATC	5 cut(s)	436, 445, 580, 1078, 1096
NlaIV	GGNNCC	9 cut(s)	42, 65, 463, 464, 571, 930, 1011, 1687, 1914
NmuCI	GTSAC	5 cut(s)	118, 193, 850, 1130, 1621
NsiI	ATGCAT	1 cut(s)	1405
NspI	RCATGY	1 cut(s)	1494
PagI	TCATGA	1 cut(s)	1749
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	391, 794, 1604, 1832
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	7 cut(s)	25, 28, 298, 610, 667, 1449, 1631
PleI	GAGTC	2 cut(s)	670, 994
PpsI	GAGTC	2 cut(s)	670, 994
Ppu21I	YACGTR	1 cut(s)	1856
PpuMI	RGGWCCY	2 cut(s)	462, 517
PsiI	TTATAA	1 cut(s)	1616
Psp124BI	GAGCTC	1 cut(s)	149
Psp5II	RGGWCCY	2 cut(s)	462, 517
Psp6I	CCWGG	3 cut(s)	66, 830, 1773
PspFI	CCCAGC	1 cut(s)	2043
PspGI	CCWGG	3 cut(s)	66, 830, 1773
PspN4I	GGNNCC	9 cut(s)	42, 65, 463, 464, 571, 930, 1011, 1687, 1914
PspPI	GGNCC	5 cut(s)	462, 517, 667, 1685, 1901
PspPPI	RGGWCCY	2 cut(s)	462, 517
PsrI	GAACNNNNNNTAC	2 cut(s)	1527, 1559
PstNI	CAGNNNCTG	3 cut(s)	73, 727, 854
RsaI	GTAC	4 cut(s)	65, 338, 385, 1598
RsaNI	GTAC	4 cut(s)	64, 337, 384, 1597
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	7 cut(s)	255, 522, 585, 1053, 1224, 1473, 1557
SatI	GCNGC	7 cut(s)	24, 27, 297, 609, 666, 1448, 1630
Sau3AI	GATC	5 cut(s)	436, 445, 580, 1078, 1096
Sau96I	GGNCC	5 cut(s)	462, 517, 667, 1685, 1901
SchI	GAGTC	2 cut(s)	670, 995
ScrFI	CCNGG	4 cut(s)	38, 68, 832, 1775
SduI	GDGCHC	4 cut(s)	36, 149, 807, 2002
SfaNI	GCATC	2 cut(s)	549, 1459
SinI	GGWCC	4 cut(s)	462, 517, 1685, 1901
SmlI	CTYRAG	3 cut(s)	521, 933, 1556
SmoI	CTYRAG	3 cut(s)	521, 933, 1556
SnaBI	TACGTA	1 cut(s)	1856
SpeI	ACTAGT	1 cut(s)	1672
Sse9I	AATT	7 cut(s)	456, 843, 1050, 1171, 1187, 1345, 2029
SspI	AATATT	3 cut(s)	219, 1121, 1378
SspMI	CTAG	3 cut(s)	1455, 1647, 1673
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	36, 66, 830, 1773
StyI	CCWWGG	5 cut(s)	429, 499, 753, 1454, 2013
TaaI	ACNGT	5 cut(s)	193, 336, 529, 856, 1640
TaiI	ACGT	7 cut(s)	120, 355, 597, 1414, 1858, 1924, 1958
TaqI	TCGA	2 cut(s)	160, 1567
TasI	AATT	7 cut(s)	456, 843, 1050, 1171, 1187, 1345, 2029
TatI	WGTACW	2 cut(s)	336, 1596
TauI	GCSGC	3 cut(s)	26, 29, 668
TfiI	GAWTC	4 cut(s)	391, 794, 1604, 1832
Tru1I	TTAA	7 cut(s)	255, 522, 585, 1053, 1224, 1473, 1557
Tru9I	TTAA	7 cut(s)	255, 522, 585, 1053, 1224, 1473, 1557
TscAI	CASTG	2 cut(s)	796, 859
TseFI	GTSAC	5 cut(s)	118, 193, 850, 1130, 1621
TseI	GCWGC	4 cut(s)	296, 608, 1447, 1629
Tsp45I	GTSAC	5 cut(s)	118, 193, 850, 1130, 1621
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	2 cut(s)	796, 859
Vha464I	CTTAAG	2 cut(s)	521, 1556
VpaK11BI	GGWCC	4 cut(s)	462, 517, 1685, 1901
XapI	RAATTY	1 cut(s)	1187
XceI	RCATGY	1 cut(s)	1494
XmaJI	CCTAGG	1 cut(s)	1454
XmiI	GTMKAC	1 cut(s)	1464
XspI	CTAG	3 cut(s)	1455, 1647, 1673
Zsp2I	ATGCAT	1 cut(s)	1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.