Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011058

Physical Location & Seq

Genomic Coordinates Forward (+)

35939950 .. 35947967

Gene Structure 8018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2382 bp

ATGTACCAGTCCCCAGGTAGGCGGCCCGCAAAGCCTGAGACTGCGACAAAGCGTAGCAAGGTTGAAATATTCAAAGAACAGAGCAACTTCATTAGATACCCGCTTAATGAAGAGATTTTGACAGATGCCCCCAATATAAACGAAGCTGCTACCCAACTCATCAAGTTTCATGGGAGCTACCAACAGTACAACCGAGATGAACGTGGTGGAAGGTCTTACTCATTTATGCTTCGTACCAAGAATCCTTGTGGGAAAGTGTCGAACCAACTATACTTGACCATGGATGATCTTGCCGATCAGTTTGGAATTGGGACCCTCCGTTTGACCACCAGACAAACATTTCAGCTCCATGGTGTTCTGAAGAAGGACCTTAAGACAGTAATGGGTAGCATCATTAGAAGCATGGGTTCAACTCTTGGTGCCTGTGGTGATCTTAATAGGAACGTCCTTGCTCCTGCTGCTCCACTACTAAGAAAAGATTACCTTTTCGCACAGAAGACAGCAGAGAACATTGCGGCCCTGCTGACTCCTCAGTCTGGTTTTTACTATGATGTATGGGTGGATGGAGAGCAGTTCCTGACAGCAGAACCTCCTGAATTCTTGCCCAGGAAGTTCAAAATTGCAGTCACTGTGCCAACAGATAACTCGGTGGATATTCTCACAAATGATATTGGTGTTGTGGTTGTTACTGATGATAATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGTATGGGAAGGACACATAGGTTGGAGAGCACATTTGCCCGTCTGGCGGAACCTTTGGGTTATGTTCCCAAAGAGGATATTCTAAAAGCAATTAAGTCTATTGTAGAAGTTCAACGAGATCATGGCAGAAGAGATGATCGTAAGTATAGTAGAATGAAATATTTGATCAGTAACTGGGGGATTGAAAAGTTTAGAAGAGAACTTGAAGACAATTATTACCAAAAGAAATTTGAGCCATTCCGCAAGTTGCCAGAGTGGGAGTTTAAAAGTTACTTGGGATGGCACGAGCAGGGTGATGGCAGTTTATTCTGTGGGCTTCATGTCGATAATGGGCGTATTGGGGGAAAGATGAAGAAGGCATTACGAGAAGTTATATCAAAGTATAATTTGAGTATAAGGCTCACACCCAACCAGAATATTATATTGTGTGATATTCGCAATGCATGGAAACGTCCCATCACAACAACTCTTGCACAGGCCGGTCTGCTGCATCCTAGGTATGTGGACCCCCTTAACCAAACTGCGATGGCATGCCCAGCCTTCCCTCTATGCCCATTGGCAATAACTGAAGCTGAACGGGGAATACCTGACATTCTTAAGCGAGTTCGAGCAGTATTTGAGAAGGTTGGTCTAAAGTACAATGAATCTGTTGTTATAAGGGTGACTGGCTGCCCCAATGGTTGTGCTAGGCCATATATGGCTGAACTTGGACTAGTGGGTGATGGTCCCAACAGCTATCAGATATGGCTTGGAGGAACACCCAATCAAACCTCAATAGCAAAAACCTTCATGAACAAGGTCAAGGTTCAAGACCTGGAAAAAGTTTTTGAACCTTTATTTTATCATTGGAAACGCAAGCGACAAGCTAAAGAATCATTTGGCGACTTCACAATACGTATGGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGAGGTGGCACCAACACGTTACAACCTGAAGCTTTTTGCTGATAAGGAGACGTATGAAGCAGTTGATGAACTTGCAAAGTTGCAGGGCAAGAATGCTCATCAGTTAGCCATGGAAGTCATCCGCAATTTTGTTGCTTCCCAGCAAAATGGGAAAATTGTATCTGGTTCAGCCCGTCATTCTTCTGTGATGAAATGCAGTTGGAATCCCCCAGAATCTGGTAGTGTCAAAGTAAACGGTGATGGATATTGGGACTGTGGTTCCAAATCGGCAGGAAGTGGGGTAGCCGGAGATGGATTAAAAGGGAAGCAAATGCTGCTGCTCATTGGCTTGCATTACAAGGCAAATGGAGGATGGAATTGGATACGAGCAGTAGGCATTGTGACACAAACCGGAGCATACTTCTTCTTGGCTGCTGGAGTCCCACGCTCAGGTTCATCAGCCATGGCAACCTTGGCAATGGAGCACGCAGCAGCAGCAGCAGCAGCAAAGATCAAATCCCTCCTCCCACTGCTGTTCTCTTCCTTGCCCTTCTTCATTTCCACGGTGACCTTTTCGGCTTCTGGGGCTCTTGAGGCCTTGGCCACAATGAGGCTCCGGCGGGGAGTTGAAGGTTTGGTGATGGTTGAGGCTAGGAATGAGGCTGTCATGGTCATGGAAGCCATCTCTTCTGCACCGGGTGGTTTATCTTCTTGGTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006275 GO:0006323 GO:0006355 GO:0006790 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009295 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009941 GO:0009987 GO:0010319 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016002 GO:0016020 GO:0016043 GO:0016491 GO:0016667 GO:0016673 GO:0019219 GO:0019222 GO:0019418 GO:0019419 GO:0019424 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031967 GO:0031975 GO:0036385 GO:0042644 GO:0042646 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0048523 GO:0050311 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055114 GO:0060255 GO:0065007 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:1900160 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

NIR_SIR NIR_SIR_ferr

Protein Analysis

793

Amino Acids

88.38

Weight (kDa)

9.29

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIR_SIR_ferr	PF03460	74 - 128	3.3e-14	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	171 - 320	1.1e-41	Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR_ferr	PF03460	340 - 393	1.8e-11	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	419 - 556	1.6e-10	Nitrite and sulphite reductase 4Fe-4S domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04590
fragaria_vesca	FvH4_3g28720 FvH4_3g28720 FvH4_3g28720 FvH4_3g28720
malus_domestica	MD03G1173800.v1.1 MD11G1192000.v1.1
prunus_persica	Prupe.4G250500_v2.0.a1
pyrus_communis	pycom03g13140 pycom11g16770
rosa_chinensis	RchiOBHm_Chr5g0052341
rosa_laevigata	RLG00000034823
rosa_multiflora	Rmu_sc0000968.1_g000009
rosa_roxburghii	Rroxscaffold_1G00028250
rosa_rugosa	Rorug05G0272600
rosa_samantha	Rh5AG345200 Rh5BG356300 Rh5CG381600 Rh5DG371400
rosa_wichuraiana	Rw5G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1391
AasI	GACNNNNNNGTC	1 cut(s)	532
AccB1I	GGYRCC	2 cut(s)	419, 1687
AccB7I	CCANNNNNTGG	1 cut(s)	1895
AciI	CCGC	8 cut(s)	22, 27, 101, 515, 782, 976, 1801, 2278
AcoI	YGGCCR	1 cut(s)	2259
AcsI	RAATTY	2 cut(s)	596, 962
AcuI	CTGAAG	3 cut(s)	380, 1323, 1727
AdeI	CACNNNGTG	1 cut(s)	2357
AfaI	GTAC	5 cut(s)	5, 188, 235, 1373, 2375
AfiI	CCNNNNNNNGG	6 cut(s)	18, 536, 781, 1895, 2108, 2268
AflII	CTTAAG	2 cut(s)	371, 1331
AflIII	ACRYGT	1 cut(s)	1694
AhlI	ACTAGT	1 cut(s)	1447
AjnI	CCWGG	3 cut(s)	13, 605, 1548
AluBI	AGCT	7 cut(s)	146, 177, 346, 1307, 1470, 1601, 1711
AluI	AGCT	7 cut(s)	146, 177, 346, 1307, 1470, 1601, 1711
Alw21I	GWGCWC	2 cut(s)	767, 2145
Alw26I	GTCTC	2 cut(s)	32, 1721
AlwNI	CAGNNNCTG	4 cut(s)	577, 629, 909, 1895
AoxI	GGCC	6 cut(s)	23, 516, 1212, 1424, 2253, 2259
ApoI	RAATTY	2 cut(s)	596, 962
ArsI	GACNNNNNNTTYG	4 cut(s)	304, 336, 609, 641
AspA2I	CCTAGG	1 cut(s)	1229
AspS9I	GGNCC	7 cut(s)	24, 312, 367, 517, 1240, 1460, 1676
AsuC2I	CCSGG	1 cut(s)	2355
AsuHPI	GGTGA	7 cut(s)	440, 1040, 1408, 1466, 1928, 2236, 2308
AvaII	GGWCC	5 cut(s)	312, 367, 1240, 1460, 1676
AvrII	CCTAGG	1 cut(s)	1229
BalI	TGGCCA	1 cut(s)	2261
BanI	GGYRCC	2 cut(s)	419, 1687
BanII	GRGCYC	1 cut(s)	2248
BauI	CACGAG	1 cut(s)	1019
BbsI	GAAGAC	2 cut(s)	503, 948
Bbv12I	GWGCWC	2 cut(s)	767, 2145
BciT130I	CCWGG	3 cut(s)	15, 607, 1550
BciVI	GTATCC	1 cut(s)	2034
BclI	TGATCA	1 cut(s)	900
BcnI	CCSGG	1 cut(s)	2355
BcoDI	GTCTC	2 cut(s)	32, 1721
BcuI	ACTAGT	1 cut(s)	1447
BfaI	CTAG	4 cut(s)	1230, 1422, 1448, 2310
BfrI	CTTAAG	2 cut(s)	371, 1331
BfuI	GTATCC	1 cut(s)	2034
BglI	GCCNNNNNGGC	1 cut(s)	779
BlnI	CCTAGG	1 cut(s)	1229
Bme1390I	CCNGG	4 cut(s)	15, 607, 1550, 2355
Bme18I	GGWCC	5 cut(s)	312, 367, 1240, 1460, 1676
BmgT120I	GGNCC	7 cut(s)	24, 312, 367, 517, 1240, 1460, 1676
BmrFI	CCNGG	4 cut(s)	15, 607, 1550, 2355
BmrI	ACTGGG	1 cut(s)	919
BmsI	GCATC	3 cut(s)	115, 399, 1234
BmuI	ACTGGG	1 cut(s)	919
BpiI	GAAGAC	2 cut(s)	503, 948
BpmI	CTGGAG	1 cut(s)	2115
Bpu10I	CCTNAGC	1 cut(s)	2107
BpuEI	CTTGAG	2 cut(s)	693, 2270
BpuMI	CCSGG	1 cut(s)	2355
BsaAI	YACGTR	1 cut(s)	1631
BsaWI	WCCGGW	1 cut(s)	2069
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 536, 781, 1895, 2108, 2268
Bse118I	RCCGGY	1 cut(s)	1214
Bse1I	ACTGG	3 cut(s)	7, 914, 1405
Bse3DI	GCAATG	3 cut(s)	510, 1180, 2142
BseBI	CCWGG	3 cut(s)	15, 607, 1550
BseGI	GGATG	6 cut(s)	289, 568, 1019, 1225, 1797, 2036
BseLI	CCNNNNNNNGG	6 cut(s)	18, 536, 781, 1895, 2108, 2268
BseMI	GCAATG	3 cut(s)	510, 1180, 2142
BseMII	CTCAG	3 cut(s)	27, 545, 2121
BseNI	ACTGG	3 cut(s)	7, 914, 1405
BseRI	GAGGAG	2 cut(s)	519, 2171
BseYI	CCCAGC	2 cut(s)	1270, 1818
BsgI	GTGCAG	1 cut(s)	2334
BshFI	GGCC	6 cut(s)	25, 518, 1214, 1426, 2255, 2261
BshNI	GGYRCC	2 cut(s)	419, 1687
BsiHKAI	GWGCWC	2 cut(s)	767, 2145
BsiSI	CCGG	5 cut(s)	1215, 1965, 2070, 2275, 2354
BslFI	GGGAC	5 cut(s)	325, 1173, 1446, 1943, 2084
BslI	CCNNNNNNNGG	6 cut(s)	18, 536, 781, 1895, 2108, 2268
BsmAI	GTCTC	2 cut(s)	32, 1721
BsmBI	CGTCTC	1 cut(s)	1721
BsmFI	GGGAC	5 cut(s)	325, 1173, 1446, 1943, 2084
BsmI	GAATGC	1 cut(s)	1777
BsnI	GGCC	6 cut(s)	25, 518, 1214, 1426, 2255, 2261
Bsp1286I	GDGCHC	3 cut(s)	767, 2145, 2248
Bsp143I	GATC	7 cut(s)	286, 295, 430, 853, 871, 900, 2169
Bsp19I	CCATGG	4 cut(s)	279, 349, 1788, 2121
BspACI	CCGC	8 cut(s)	22, 27, 101, 515, 782, 976, 1801, 2278
BspANI	GGCC	6 cut(s)	25, 518, 1214, 1426, 2255, 2261
BspCNI	CTCAG	3 cut(s)	28, 544, 2120
BspHI	TCATGA	1 cut(s)	1524
BspT107I	GGYRCC	2 cut(s)	419, 1687
BspTI	CTTAAG	2 cut(s)	371, 1331
BsrDI	GCAATG	3 cut(s)	510, 1180, 2142
BsrFI	RCCGGY	1 cut(s)	1214
BsrI	ACTGG	3 cut(s)	7, 914, 1405
BssAI	RCCGGY	1 cut(s)	1214
BssMI	GATC	7 cut(s)	286, 295, 430, 853, 871, 900, 2169
BssSI	CACGAG	1 cut(s)	1019
BssT1I	CCWWGG	7 cut(s)	279, 349, 1229, 1788, 2121, 2130, 2256
Bst2BI	CACGAG	1 cut(s)	1019
Bst2UI	CCWGG	3 cut(s)	15, 607, 1550
Bst4CI	ACNGT	6 cut(s)	186, 379, 631, 1916, 1934, 2224
Bst6I	CTCTTC	5 cut(s)	105, 859, 925, 2203, 2350
BstAFI	CTTAAG	2 cut(s)	371, 1331
BstAPI	GCANNNNNTGC	1 cut(s)	1993
BstBAI	YACGTR	1 cut(s)	1631
BstC8I	GCNNGC	5 cut(s)	27, 1267, 1592, 2009, 2145
BstDEI	CTNAG	4 cut(s)	36, 470, 531, 2107
BstDSI	CCRYGG	5 cut(s)	279, 349, 1788, 2121, 2220
BstEII	GGTNACC	1 cut(s)	2224
BstF5I	GGATG	6 cut(s)	289, 568, 1019, 1225, 1797, 2036
BstKTI	GATC	7 cut(s)	289, 298, 433, 856, 874, 903, 2172
BstMAI	GTCTC	2 cut(s)	32, 1721
BstMBI	GATC	7 cut(s)	286, 295, 430, 853, 871, 900, 2169
BstNI	CCWGG	3 cut(s)	15, 607, 1550
BstNSI	RCATGY	1 cut(s)	1269
BstPI	GGTNACC	1 cut(s)	2224
BstSCI	CCNGG	4 cut(s)	13, 605, 1548, 2353
BstSNI	TACGTA	1 cut(s)	1631
BstV2I	GAAGAC	2 cut(s)	503, 948
BstXI	CCANNNNNNTGG	1 cut(s)	1826
BsuI	GTATCC	1 cut(s)	2034
BsuRI	GGCC	6 cut(s)	25, 518, 1214, 1426, 2255, 2261
BtgI	CCRYGG	5 cut(s)	279, 349, 1788, 2121, 2220
BtgZI	GCGATG	1 cut(s)	1274
BtsCI	GGATG	6 cut(s)	289, 568, 1019, 1225, 1797, 2036
BtsI	GCAGTG	1 cut(s)	2186
BtsIMutI	CAGTG	2 cut(s)	627, 2186
Cac8I	GCNNGC	5 cut(s)	27, 1267, 1592, 2009, 2145
CaiI	CAGNNNCTG	4 cut(s)	577, 629, 909, 1895
CciI	TCATGA	1 cut(s)	1524
Cfr10I	RCCGGY	1 cut(s)	1214
Cfr13I	GGNCC	7 cut(s)	24, 312, 367, 517, 1240, 1460, 1676
Csp6I	GTAC	5 cut(s)	4, 187, 234, 1372, 2374
CviQI	GTAC	5 cut(s)	4, 187, 234, 1372, 2374
DdeI	CTNAG	4 cut(s)	36, 470, 531, 2107
DpnI	GATC	7 cut(s)	288, 297, 432, 855, 873, 902, 2171
DpnII	GATC	7 cut(s)	286, 295, 430, 853, 871, 900, 2169
DraI	TTTAAA	1 cut(s)	1000
DraIII	CACNNNGTG	1 cut(s)	2357
DrdI	GACNNNNNNGTC	1 cut(s)	532
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	2259
Eam1104I	CTCTTC	5 cut(s)	105, 859, 925, 2203, 2350
EarI	CTCTTC	5 cut(s)	105, 859, 925, 2203, 2350
EciI	GGCGGA	1 cut(s)	797
Eco105I	TACGTA	1 cut(s)	1631
Eco130I	CCWWGG	7 cut(s)	279, 349, 1229, 1788, 2121, 2130, 2256
Eco147I	AGGCCT	1 cut(s)	2255
Eco24I	GRGCYC	1 cut(s)	2248
Eco47I	GGWCC	5 cut(s)	312, 367, 1240, 1460, 1676
Eco57I	CTGAAG	3 cut(s)	380, 1323, 1727
Eco91I	GGTNACC	1 cut(s)	2224
EcoO109I	RGGNCCY	2 cut(s)	312, 367
EcoO65I	GGTNACC	1 cut(s)	2224
EcoRI	GAATTC	1 cut(s)	596
EcoRII	CCWGG	3 cut(s)	13, 605, 1548
EcoT14I	CCWWGG	7 cut(s)	279, 349, 1229, 1788, 2121, 2130, 2256
EcoT22I	ATGCAT	1 cut(s)	1180
EcoT38I	GRGCYC	1 cut(s)	2248
ErhI	CCWWGG	7 cut(s)	279, 349, 1229, 1788, 2121, 2130, 2256
Esp3I	CGTCTC	1 cut(s)	1721
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	5 cut(s)	325, 1173, 1446, 1943, 2084
FauI	CCCGC	3 cut(s)	34, 108, 2271
FbaI	TGATCA	1 cut(s)	900
FokI	GGATG	6 cut(s)	296, 575, 1026, 1212, 1784, 2043
FriOI	GRGCYC	1 cut(s)	2248
FspBI	CTAG	4 cut(s)	1230, 1422, 1448, 2310
GsaI	CCCAGC	2 cut(s)	1274, 1822
GsuI	CTGGAG	1 cut(s)	2115
HaeIII	GGCC	6 cut(s)	25, 518, 1214, 1426, 2255, 2261
HapII	CCGG	5 cut(s)	1215, 1965, 2070, 2275, 2354
HincII	GTYRAC	1 cut(s)	1663
HindII	GTYRAC	1 cut(s)	1663
HindIII	AAGCTT	1 cut(s)	1709
HinfI	GANTC	7 cut(s)	241, 526, 1379, 1607, 1882, 1892, 2097
HpaII	CCGG	5 cut(s)	1215, 1965, 2070, 2275, 2354
HphI	GGTGA	7 cut(s)	440, 1040, 1408, 1466, 1928, 2236, 2308
Hpy166II	GTNNAC	3 cut(s)	1240, 1663, 1912
Hpy188I	TCNGA	2 cut(s)	360, 1476
Hpy188III	TCNNGA	7 cut(s)	577, 593, 1525, 1544, 1652, 1679, 2249
Hpy8I	GTNNAC	3 cut(s)	1240, 1663, 1912
HpyCH4III	ACNGT	6 cut(s)	186, 379, 631, 1916, 1934, 2224
HpyCH4IV	ACGT	6 cut(s)	202, 444, 1186, 1630, 1696, 1730
HpyCH4V	TGCA	9 cut(s)	623, 1178, 1208, 1225, 1754, 1762, 1875, 2011, 2351
HpyF3I	CTNAG	4 cut(s)	36, 470, 531, 2107
HpySE526I	ACGT	6 cut(s)	202, 444, 1186, 1630, 1696, 1730
KflI	GGGWCCC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	900
Kzo9I	GATC	7 cut(s)	286, 295, 430, 853, 871, 900, 2169
LmnI	GCTCC	8 cut(s)	174, 351, 457, 466, 703, 2072, 2140, 2277
LweI	GCATC	3 cut(s)	115, 399, 1234
MaeI	CTAG	4 cut(s)	1230, 1422, 1448, 2310
MaeII	ACGT	6 cut(s)	202, 444, 1186, 1630, 1696, 1730
MaeIII	GTNAC	8 cut(s)	625, 685, 905, 1004, 1396, 1697, 2059, 2224
MalI	GATC	7 cut(s)	288, 297, 432, 855, 873, 902, 2171
MboI	GATC	7 cut(s)	286, 295, 430, 853, 871, 900, 2169
MhlI	GDGCHC	3 cut(s)	767, 2145, 2248
MlsI	TGGCCA	1 cut(s)	2261
MluNI	TGGCCA	1 cut(s)	2261
MlyI	GAGTC	2 cut(s)	520, 2106
MmeI	TCCRAC	2 cut(s)	738, 1859
Mox20I	TGGCCA	1 cut(s)	2261
Mph1103I	ATGCAT	1 cut(s)	1180
MscI	TGGCCA	1 cut(s)	2261
MseI	TTAA	8 cut(s)	105, 372, 435, 828, 999, 1248, 1332, 1976
MslI	CAYNNNNRTG	1 cut(s)	2330
Msp20I	TGGCCA	1 cut(s)	2261
MspCI	CTTAAG	2 cut(s)	371, 1331
MspI	CCGG	5 cut(s)	1215, 1965, 2070, 2275, 2354
MspR9I	CCNGG	4 cut(s)	15, 607, 1550, 2355
Mva1269I	GAATGC	1 cut(s)	1777
MvaI	CCWGG	3 cut(s)	15, 607, 1550
NciI	CCSGG	1 cut(s)	2355
NcoI	CCATGG	4 cut(s)	279, 349, 1788, 2121
NdeII	GATC	7 cut(s)	286, 295, 430, 853, 871, 900, 2169
NmuCI	GTSAC	4 cut(s)	625, 1396, 2059, 2224
NsiI	ATGCAT	1 cut(s)	1180
NspI	RCATGY	1 cut(s)	1269
PaeI	GCATGC	1 cut(s)	1269
PagI	TCATGA	1 cut(s)	1524
PceI	AGGCCT	1 cut(s)	2255
PctI	GAATGC	1 cut(s)	1777
PfeI	GAWTC	5 cut(s)	241, 1379, 1607, 1882, 1892
PflMI	CCANNNNNTGG	1 cut(s)	1895
PleI	GAGTC	2 cut(s)	520, 2105
PpsI	GAGTC	2 cut(s)	520, 2105
Ppu21I	YACGTR	1 cut(s)	1631
PpuMI	RGGWCCY	2 cut(s)	312, 367
PsiI	TTATAA	1 cut(s)	1391
Psp5II	RGGWCCY	2 cut(s)	312, 367
Psp6I	CCWGG	3 cut(s)	13, 605, 1548
PspEI	GGTNACC	1 cut(s)	2224
PspFI	CCCAGC	2 cut(s)	1270, 1818
PspGI	CCWGG	3 cut(s)	13, 605, 1548
PspPI	GGNCC	7 cut(s)	24, 312, 367, 517, 1240, 1460, 1676
PspPPI	RGGWCCY	2 cut(s)	312, 367
PsrI	GAACNNNNNNTAC	4 cut(s)	254, 286, 1302, 1334
PstNI	CAGNNNCTG	4 cut(s)	577, 629, 909, 1895
RsaI	GTAC	5 cut(s)	5, 188, 235, 1373, 2375
RsaNI	GTAC	5 cut(s)	4, 187, 234, 1372, 2374
RseI	CAYNNNNRTG	1 cut(s)	2330
SaqAI	TTAA	8 cut(s)	105, 372, 435, 828, 999, 1248, 1332, 1976
Sau3AI	GATC	7 cut(s)	286, 295, 430, 853, 871, 900, 2169
Sau96I	GGNCC	7 cut(s)	24, 312, 367, 517, 1240, 1460, 1676
SchI	GAGTC	2 cut(s)	520, 2106
ScrFI	CCNGG	4 cut(s)	15, 607, 1550, 2355
SduI	GDGCHC	3 cut(s)	767, 2145, 2248
SfaNI	GCATC	3 cut(s)	115, 399, 1234
SinI	GGWCC	5 cut(s)	312, 367, 1240, 1460, 1676
SmiMI	CAYNNNNRTG	1 cut(s)	2330
SmlI	CTYRAG	4 cut(s)	371, 708, 1331, 2249
SmoI	CTYRAG	4 cut(s)	371, 708, 1331, 2249
SnaBI	TACGTA	1 cut(s)	1631
SpeI	ACTAGT	1 cut(s)	1447
SphI	GCATGC	1 cut(s)	1269
SseBI	AGGCCT	1 cut(s)	2255
SsiI	CCGC	8 cut(s)	22, 27, 101, 515, 782, 976, 1801, 2278
SspI	AATATT	3 cut(s)	69, 896, 1153
SspMI	CTAG	4 cut(s)	1230, 1422, 1448, 2310
StuI	AGGCCT	1 cut(s)	2255
StyD4I	CCNGG	4 cut(s)	13, 605, 1548, 2353
StyI	CCWWGG	7 cut(s)	279, 349, 1229, 1788, 2121, 2130, 2256
TaaI	ACNGT	6 cut(s)	186, 379, 631, 1916, 1934, 2224
TaiI	ACGT	6 cut(s)	205, 447, 1189, 1633, 1699, 1733
TaqI	TCGA	3 cut(s)	260, 1059, 1342
TatI	WGTACW	2 cut(s)	186, 1371
TauI	GCSGC	2 cut(s)	25, 518
TfiI	GAWTC	5 cut(s)	241, 1379, 1607, 1882, 1892
Tru1I	TTAA	8 cut(s)	105, 372, 435, 828, 999, 1248, 1332, 1976
Tru9I	TTAA	8 cut(s)	105, 372, 435, 828, 999, 1248, 1332, 1976
TscAI	CASTG	2 cut(s)	634, 2193
TseFI	GTSAC	4 cut(s)	625, 1396, 2059, 2224
Tsp45I	GTSAC	4 cut(s)	625, 1396, 2059, 2224
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	634, 2193
Van91I	CCANNNNNTGG	1 cut(s)	1895
Vha464I	CTTAAG	2 cut(s)	371, 1331
VpaK11BI	GGWCC	5 cut(s)	312, 367, 1240, 1460, 1676
XapI	RAATTY	2 cut(s)	596, 962
XceI	RCATGY	1 cut(s)	1269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2128
XmaJI	CCTAGG	1 cut(s)	1229
XspI	CTAG	4 cut(s)	1230, 1422, 1448, 2310
Zsp2I	ATGCAT	1 cut(s)	1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.