Rh5BG356200

Photosystem II 5 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014238
Physical Location & Seq
Forward (+)
55329887 .. 55330883
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG356200.1

Sequence Viewer

Length: 315 bp
ATGGCTTCCATGACCATGACAGCCTCATTCCTAGCCTCAACCATCACCAAACCTTCAACTCCCCGCCGGAGCCTCATTGTGGCCAAGGCCTCAAGAGCCCCGGAAGCCGAAAAGGTCACCGTGGAAATGAAGAAGGGCAAGGAAGAGAACAGCAGTGGGAGGAGGGATTTGATCTTTGCTGCTGCTGCTGCTGCTGCGTGCTCCATTGCCAAGGTTGCCATGGCTGATGAACCTGAGCGTGGGACTCCAGCAGCCAAGAAGAAGTATGCTCCGGTTTGTGTCACAATGCCTACTGCTCGTATCTGCCGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.02

Weight (kDa)

10.03

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51400 AT3G21055 AT3G21055
fragaria_vesca FvH4_3g28710
malus_domestica MD03G1173700.v1.1 MD11G1191900.v1.1
prunus_persica Prupe.4G250700_v2.0.a1
pyrus_communis pycom03g13130
rosa_chinensis RchiOBHm_Chr5g0052351
rosa_laevigata RLG00000034822
rosa_multiflora Rmu_sc0031963.1_g000001
rosa_rugosa Rorug05G0272600
rosa_samantha Rh5AG345100 Rh5BG356200 Rh5CG381500 Rh5DG371200
rosa_wichuraiana Rw5G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 307
AcoI YGGCCR 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 79, 239
AgsI TTSAA 1 cut(s) 57
Alw21I GWGCWC 1 cut(s) 203
AoxI GGCC 2 cut(s) 81, 87
ApeKI GCWGC 7 cut(s) 179, 182, 185, 188, 191, 194, 251
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 37, 109
BalI TGGCCA 1 cut(s) 83
BanII GRGCYC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 7 cut(s) 166, 169, 172, 175, 178, 181, 263
BccI CCATC 1 cut(s) 50
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 32
BisI GCNGC 8 cut(s) 180, 183, 186, 189, 192, 195, 252, 307
BlsI GCNGC 8 cut(s) 181, 184, 187, 190, 193, 196, 253, 308
Bme1390I CCNGG 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 5 cut(s) 84, 99, 120, 210, 219
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 239
Bse3DI GCAATG 1 cut(s) 204
BseDI CCNNGG 5 cut(s) 84, 99, 120, 210, 219
BseLI CCNNNNNNNGG 2 cut(s) 79, 239
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 7 cut(s) 166, 169, 172, 175, 178, 181, 263
BshFI GGCC 2 cut(s) 83, 89
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 3 cut(s) 67, 101, 272
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 79, 239
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 2 cut(s) 83, 89
Bsp1286I GDGCHC 2 cut(s) 100, 203
Bsp143I GATC 1 cut(s) 171
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 2 cut(s) 64, 307
BspANI GGCC 2 cut(s) 83, 89
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 204
BssECI CCNNGG 5 cut(s) 84, 99, 120, 210, 219
BssMI GATC 1 cut(s) 171
BssT1I CCWWGG 3 cut(s) 84, 210, 219
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 2 cut(s) 120, 219
BstEII GGTNACC 1 cut(s) 115
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 7 cut(s) 95, 104, 185, 188, 191, 194, 215
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 7 cut(s) 166, 169, 172, 175, 178, 181, 263
BsuRI GGCC 2 cut(s) 83, 89
BtgI CCRYGG 2 cut(s) 120, 219
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 199
CviAII CATG 3 cut(s) 10, 16, 220
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco130I CCWWGG 3 cut(s) 84, 210, 219
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 100
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 84, 210, 219
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 3 cut(s) 84, 210, 219
FaeI CATG 3 cut(s) 13, 19, 223
FaiI YATR 4 cut(s) 11, 17, 221, 267
FaqI GGGAC 1 cut(s) 256
FatI CATG 3 cut(s) 9, 15, 219
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 8 cut(s) 180, 183, 186, 189, 192, 195, 252, 307
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 8 cut(s) 180, 183, 186, 189, 192, 195, 252, 307
FspBI CTAG 1 cut(s) 32
GluI GCNGC 8 cut(s) 180, 183, 186, 189, 192, 195, 252, 307
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 2 cut(s) 83, 89
HapII CCGG 3 cut(s) 67, 101, 272
Hin1II CATG 3 cut(s) 13, 19, 223
HinfI GANTC 1 cut(s) 244
HpaII CCGG 3 cut(s) 67, 101, 272
HphI GGTGA 2 cut(s) 37, 109
Hpy188III TCNNGA 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 63, 127
HpyCH4III ACNGT 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 7 cut(s) 95, 104, 185, 188, 191, 194, 215
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 3 cut(s) 13, 19, 223
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 69, 206, 274
LpnPI CCDG 5 cut(s) 80, 114, 246, 261, 285
Lsp1109I GCAGC 7 cut(s) 166, 169, 172, 175, 178, 181, 263
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 115, 280
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 3 cut(s) 142, 155, 271
MhlI GDGCHC 2 cut(s) 100, 203
MlsI TGGCCA 1 cut(s) 83
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 6 cut(s) 34, 46, 83, 100, 153, 156
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 3 cut(s) 67, 101, 272
MspR9I CCNGG 1 cut(s) 101
MwoI GCNNNNNNNGC 7 cut(s) 95, 104, 185, 188, 191, 194, 215
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 219
NdeII GATC 1 cut(s) 171
NlaIII CATG 3 cut(s) 13, 19, 223
NlaIV GGNNCC 1 cut(s) 71
NmuCI GTSAC 2 cut(s) 115, 280
PceI AGGCCT 1 cut(s) 89
PkrI GCNGC 8 cut(s) 181, 184, 187, 190, 193, 196, 253, 308
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspEI GGTNACC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 14
SatI GCNGC 8 cut(s) 180, 183, 186, 189, 192, 195, 252, 307
Sau3AI GATC 1 cut(s) 171
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 2 cut(s) 100, 203
SetI ASST 4 cut(s) 55, 117, 216, 235
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 64, 307
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 3 cut(s) 84, 210, 219
TaaI ACNGT 1 cut(s) 121
TauI GCSGC 1 cut(s) 309
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 2 cut(s) 115, 280
TseI GCWGC 7 cut(s) 179, 182, 185, 188, 191, 194, 251
Tsp45I GTSAC 2 cut(s) 115, 280
TspDTI ATGAA 2 cut(s) 143, 243
TspRI CASTG 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.