Prupe.4G250700_v2.0.a1

Photosystem II 5 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014238
Physical Location & Seq
Reverse (-)
16766786 .. 16767510
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G250700.1

Sequence Viewer

Length: 324 bp
ATGGCTTCCATGACCATGGCAGCCTCCTTCCTCACTGGCTCAGCCTCAACCATCACCAAACCTTCTACAGCTCGCAGGAGTCTCATTGTGGCCAAGGCCTCAAGTGCCCCAGAAGGAGAGAAGGGCAGCTTGGAAATGAAGAAGAGCAGCAGCAGCAGCAGCAGTGGGAGGAGGGATCTGATGTTTGCTGCTGCAGCTGCGGCTGCATGCTCCATAGCCAAGGCTGCCATGGCCGATGAGCCAAAGCGTGGTTCAAAAGAAGCCAAGGAGAAGTATGCTCCTGTTTGTGTCACGATGCCTACTGCTCGTATCTGCCGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.01

Weight (kDa)

9.96

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51400 AT3G21055 AT3G21055
fragaria_vesca FvH4_3g28710
malus_domestica MD03G1173700.v1.1 MD11G1191900.v1.1
prunus_persica Prupe.4G250700_v2.0.a1
pyrus_communis pycom03g13130
rosa_chinensis RchiOBHm_Chr5g0052351
rosa_laevigata RLG00000034822
rosa_multiflora Rmu_sc0031963.1_g000001
rosa_rugosa Rorug05G0272600
rosa_samantha Rh5AG345100 Rh5BG356200 Rh5CG381500 Rh5DG371200
rosa_wichuraiana Rw5G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 2 cut(s) 200, 316
AclWI GGATC 1 cut(s) 183
AcoI YGGCCR 2 cut(s) 90, 231
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 255
AjuI GAANNNNNNNTTGG 4 cut(s) 113, 145, 235, 267
AluBI AGCT 3 cut(s) 71, 129, 197
AluI AGCT 3 cut(s) 71, 129, 197
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 183
AoxI GGCC 3 cut(s) 90, 96, 231
AsuHPI GGTGA 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 109
BalI TGGCCA 1 cut(s) 92
BccI CCATC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 66, 192
BlpI GCTNAGC 1 cut(s) 40
BmsI GCATC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 85
BsaJI CCNNGG 5 cut(s) 15, 93, 219, 228, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 40
BseDI CCNNGG 5 cut(s) 15, 93, 219, 228, 264
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 109
BshFI GGCC 3 cut(s) 92, 98, 233
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 3 cut(s) 92, 98, 233
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 175
Bsp1720I GCTNAGC 1 cut(s) 40
Bsp19I CCATGG 2 cut(s) 15, 228
BspACI CCGC 2 cut(s) 200, 316
BspANI GGCC 3 cut(s) 92, 98, 233
BspCNI CTCAG 1 cut(s) 53
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 183
BspQI GCTCTTC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 5 cut(s) 15, 93, 219, 228, 264
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 5 cut(s) 15, 93, 219, 228, 264
Bst6I CTCTTC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 73, 208
BstDEI CTNAG 1 cut(s) 40
BstDSI CCRYGG 2 cut(s) 15, 228
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 175
BstNSI RCATGY 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 66, 192
BstSLI GKGCMC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 3 cut(s) 92, 98, 233
BtgI CCRYGG 2 cut(s) 15, 228
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 33, 169
Cac8I GCNNGC 2 cut(s) 73, 208
CviAII CATG 4 cut(s) 10, 16, 207, 229
DdeI CTNAG 1 cut(s) 40
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 90, 231
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco130I CCWWGG 5 cut(s) 15, 93, 219, 228, 264
Eco147I AGGCCT 1 cut(s) 98
EcoT14I CCWWGG 5 cut(s) 15, 93, 219, 228, 264
ErhI CCWWGG 5 cut(s) 15, 93, 219, 228, 264
FaeI CATG 4 cut(s) 13, 19, 210, 232
FaiI YATR 6 cut(s) 11, 17, 208, 215, 230, 276
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 4 cut(s) 9, 15, 206, 228
HaeIII GGCC 3 cut(s) 92, 98, 233
Hin1II CATG 4 cut(s) 13, 19, 210, 232
HinfI GANTC 1 cut(s) 79
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 37, 72, 107, 115
HpyCH4V TGCA 2 cut(s) 194, 206
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 4 cut(s) 13, 19, 210, 232
Kzo9I GATC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 2 cut(s) 215, 283
LpnPI CCDG 4 cut(s) 21, 61, 123, 294
LweI GCATC 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 2 cut(s) 151, 154
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 6 cut(s) 34, 41, 55, 109, 162, 165
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 197
NcoI CCATGG 2 cut(s) 15, 228
NdeII GATC 1 cut(s) 175
NlaIII CATG 4 cut(s) 13, 19, 210, 232
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 210
PaeI GCATGC 1 cut(s) 210
PceI AGGCCT 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 248
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 137
Sau3AI GATC 1 cut(s) 175
SchI GAGTC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 109
SetI ASST 4 cut(s) 64, 73, 131, 199
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 66, 192
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SphI GCATGC 1 cut(s) 210
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 2 cut(s) 200, 316
StuI AGGCCT 1 cut(s) 98
StyI CCWWGG 5 cut(s) 15, 93, 219, 228, 264
TauI GCSGC 2 cut(s) 203, 318
TscAI CASTG 2 cut(s) 40, 169
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 2 cut(s) 40, 169
Van91I CCANNNNNTGG 1 cut(s) 248
XceI RCATGY 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.