MD11G1191900.v1.1

Photosystem II 5 kDa protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
27245819 .. 27246139
321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1191900.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCATCCATGACCATGACAGCCGCCTCATTCCTGACCGCAGGCTCAGCCTCAACCATCGCCAAACCTTCAACTTCCAGCCGCCGGAGCCTCGTCGTAGCCAAGGCCGCCGCCAGAGCCCCAGAGGGAGAAACAAAGAAAGAAGAGAGCAGCAGCAGCAGCGGGAGGAGGGACTTGATTTTTGCGGCTGCGGCTGTGGCGGCGTGCTCTCTTGCCAAGGCTGCTTTGGCGGATGAGCCTAAGAGGGGGAGCAAAGAGGCAAAGGAGAAGTATGCTCCTGTTTGTGTCACCATGCCAACTGCTCGTATCTGTCGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

10.9

Weight (kDa)

9.88

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51400 AT3G21055 AT3G21055
fragaria_vesca FvH4_3g28710
malus_domestica MD03G1173700.v1.1 MD11G1191900.v1.1
prunus_persica Prupe.4G250700_v2.0.a1
pyrus_communis pycom03g13130
rosa_chinensis RchiOBHm_Chr5g0052351
rosa_laevigata RLG00000034822
rosa_multiflora Rmu_sc0031963.1_g000001
rosa_rugosa Rorug05G0272600
rosa_samantha Rh5AG345100 Rh5BG356200 Rh5CG381500 Rh5DG371200
rosa_wichuraiana Rw5G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 84, 245
AgsI TTSAA 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 209
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 6 cut(s) 150, 153, 156, 159, 188, 221
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AsuHPI GGTGA 1 cut(s) 280
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 6 cut(s) 162, 165, 168, 171, 175, 208
BccI CCATC 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 102, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 245
BseDI CCNNGG 2 cut(s) 102, 216
BseGI GGATG 2 cut(s) 5, 238
BseLI CCNNNNNNNGG 2 cut(s) 84, 245
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 6 cut(s) 162, 165, 168, 171, 175, 208
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 84, 245
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 121, 209
Bsp1720I GCTNAGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 102, 216
BssT1I CCWWGG 2 cut(s) 102, 216
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 43, 205
BstDEI CTNAG 2 cut(s) 46, 240
BstF5I GGATG 2 cut(s) 5, 238
BstV1I GCAGC 6 cut(s) 162, 165, 168, 171, 175, 208
BsuRI GGCC 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 5, 238
Cac8I GCNNGC 2 cut(s) 43, 205
CviAII CATG 3 cut(s) 10, 16, 292
DdeI CTNAG 2 cut(s) 46, 240
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 102, 216
Eco24I GRGCYC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 102, 216
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 2 cut(s) 102, 216
FaeI CATG 3 cut(s) 13, 19, 295
FaiI YATR 4 cut(s) 11, 17, 273, 293
FaqI GGGAC 1 cut(s) 185
FatI CATG 3 cut(s) 9, 15, 291
FauI CCCGC 1 cut(s) 155
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 85
Hin1II CATG 3 cut(s) 13, 19, 295
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 280
Hpy188III TCNNGA 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 46, 240
Hsp92II CATG 3 cut(s) 13, 19, 295
LmnI GCTCC 3 cut(s) 87, 249, 280
LpnPI CCDG 7 cut(s) 27, 47, 91, 98, 127, 135, 291
Lsp1109I GCAGC 6 cut(s) 162, 165, 168, 171, 175, 208
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 286
MboII GAAGA 1 cut(s) 155
MhlI GDGCHC 2 cut(s) 121, 209
MnlI CCTC 8 cut(s) 37, 61, 101, 118, 159, 162, 237, 250
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 1 cut(s) 85
NlaIII CATG 3 cut(s) 13, 19, 295
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 14
SduI GDGCHC 2 cut(s) 121, 209
SetI ASST 1 cut(s) 70
SfaNI GCATC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 14
StyI CCWWGG 2 cut(s) 102, 216
TauI GCSGC 7 cut(s) 26, 84, 110, 113, 188, 194, 203
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 6 cut(s) 150, 153, 156, 159, 188, 221
Tsp45I GTSAC 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.