pycom03g13130

Photosystem II 5 kDa protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
14039236 .. 14039556
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13130.1

Sequence Viewer

Length: 321 bp
ATGGCATCCATGACCATGACAGCCGCATCATTCCTGACTGCAGGCTCAGTCTCAACCGTCGCCAAACCTTCAACTTCCAGCCGCCGGAGCCTCGTCGTGGCCAAGGCCGTAGCCAGACCCTCAGAGGGAGAAACAAAGAAGGAAGGGAGCAGCAACAGCAGTGGAAGGAGGGACTTGATGTTTGCGGCTGCGGCTGCGGCGGTCTGCTCTCTTGCCAAGGCTGCCTTGGCGGATGAGCCAAAGAGGGGGACCAAAGAAGCCAAGGAGAAGTATGCTCCTGTTTGCGTCACCATGCCAACTGCTCGTATCTGTCGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

10.94

Weight (kDa)

10.03

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51400 AT3G21055 AT3G21055
fragaria_vesca FvH4_3g28710
malus_domestica MD03G1173700.v1.1 MD11G1191900.v1.1
prunus_persica Prupe.4G250700_v2.0.a1
pyrus_communis pycom03g13130
rosa_chinensis RchiOBHm_Chr5g0052351
rosa_laevigata RLG00000034822
rosa_multiflora Rmu_sc0031963.1_g000001
rosa_rugosa Rorug05G0272600
rosa_samantha Rh5AG345100 Rh5BG356200 Rh5CG381500 Rh5DG371200
rosa_wichuraiana Rw5G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 24, 82, 185, 191, 197, 200, 230
AcoI YGGCCR 1 cut(s) 99
AfiI CCNNNNNNNGG 4 cut(s) 84, 97, 125, 245
AgsI TTSAA 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 2 cut(s) 99, 105
ApeKI GCWGC 4 cut(s) 150, 188, 194, 221
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 249
BalI TGGCCA 1 cut(s) 101
BbvI GCAGC 4 cut(s) 162, 175, 181, 208
BceAI ACGGC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 55
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 9 cut(s) 24, 82, 151, 186, 189, 192, 195, 198, 222
BlsI GCNGC 9 cut(s) 25, 83, 152, 187, 190, 193, 196, 199, 223
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 89, 250
BmsI GCATC 2 cut(s) 14, 35
BsaJI CCNNGG 4 cut(s) 102, 216, 225, 261
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 97, 125, 245
BseDI CCNNGG 4 cut(s) 102, 216, 225, 261
BseGI GGATG 2 cut(s) 5, 238
BseLI CCNNNNNNNGG 4 cut(s) 84, 97, 125, 245
BseMII CTCAG 2 cut(s) 60, 135
BseXI GCAGC 4 cut(s) 162, 175, 181, 208
BshFI GGCC 2 cut(s) 101, 107
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 2 cut(s) 185, 262
BslI CCNNNNNNNGG 4 cut(s) 84, 97, 125, 245
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 185, 262
BsnI GGCC 2 cut(s) 101, 107
BspACI CCGC 7 cut(s) 24, 82, 185, 191, 197, 200, 230
BspANI GGCC 2 cut(s) 101, 107
BspCNI CTCAG 2 cut(s) 59, 134
BspLI GGNNCC 2 cut(s) 89, 250
BspMAI CTGCAG 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 102, 216, 225, 261
BssT1I CCWWGG 4 cut(s) 102, 216, 225, 261
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 46, 121
BstF5I GGATG 2 cut(s) 5, 238
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 7 cut(s) 87, 156, 191, 194, 197, 221, 227
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 4 cut(s) 162, 175, 181, 208
BsuRI GGCC 2 cut(s) 101, 107
BtsCI GGATG 2 cut(s) 5, 238
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 249
CseI GACGC 1 cut(s) 274
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 3 cut(s) 10, 16, 292
DdeI CTNAG 2 cut(s) 46, 121
EaeI YGGCCR 1 cut(s) 99
EciI GGCGGA 1 cut(s) 245
Eco130I CCWWGG 4 cut(s) 102, 216, 225, 261
Eco47I GGWCC 1 cut(s) 249
EcoT14I CCWWGG 4 cut(s) 102, 216, 225, 261
ErhI CCWWGG 4 cut(s) 102, 216, 225, 261
FaeI CATG 3 cut(s) 13, 19, 295
FaiI YATR 4 cut(s) 11, 17, 273, 293
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 2 cut(s) 185, 262
FatI CATG 3 cut(s) 9, 15, 291
Fnu4HI GCNGC 9 cut(s) 24, 82, 151, 186, 189, 192, 195, 198, 222
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 9 cut(s) 24, 82, 151, 186, 189, 192, 195, 198, 222
GluI GCNGC 9 cut(s) 24, 82, 151, 186, 189, 192, 195, 198, 222
HaeIII GGCC 2 cut(s) 101, 107
HapII CCGG 1 cut(s) 85
HgaI GACGC 1 cut(s) 274
Hin1II CATG 3 cut(s) 13, 19, 295
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 34
Hpy99I CGWCG 2 cut(s) 62, 98
HpyAV CCTTC 4 cut(s) 78, 133, 137, 159
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 156, 191, 194, 197, 221, 227
HpyF3I CTNAG 2 cut(s) 46, 121
Hsp92II CATG 3 cut(s) 13, 19, 295
LmnI GCTCC 3 cut(s) 87, 147, 280
LpnPI CCDG 6 cut(s) 27, 47, 91, 98, 127, 291
Lsp1109I GCAGC 4 cut(s) 162, 175, 181, 208
LweI GCATC 2 cut(s) 14, 35
MaeIII GTNAC 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 101
MluNI TGGCCA 1 cut(s) 101
MnlI CCTC 5 cut(s) 101, 118, 130, 162, 237
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 85
MwoI GCNNNNNNNGC 7 cut(s) 87, 156, 191, 194, 197, 221, 227
NlaIII CATG 3 cut(s) 13, 19, 295
NlaIV GGNNCC 2 cut(s) 89, 250
NmuCI GTSAC 1 cut(s) 286
PkrI GCNGC 9 cut(s) 25, 83, 152, 187, 190, 193, 196, 199, 223
PspN4I GGNNCC 2 cut(s) 89, 250
PspPI GGNCC 1 cut(s) 249
PstI CTGCAG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 14
SatI GCNGC 9 cut(s) 24, 82, 151, 186, 189, 192, 195, 198, 222
Sau96I GGNCC 1 cut(s) 249
SetI ASST 1 cut(s) 70
SfaNI GCATC 2 cut(s) 14, 35
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 14
SsiI CCGC 7 cut(s) 24, 82, 185, 191, 197, 200, 230
StyI CCWWGG 4 cut(s) 102, 216, 225, 261
TaaI ACNGT 1 cut(s) 58
TauI GCSGC 5 cut(s) 26, 84, 188, 194, 200
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 4 cut(s) 150, 188, 194, 221
Tsp45I GTSAC 1 cut(s) 286
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 249
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.