Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012817

Physical Location & Seq

Genomic Coordinates Forward (+)

7644265 .. 7646640

Gene Structure 2376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCTCAATCGTGTCTTAAAATTGTTCGAATCAACAATCTAAGGAACAGAGTGAATCGTCGGATTTTGATTCTCCGACGATTCACACGGTTGTTATGGAGTAGAATCGTTGCTTGTACTCCTGGCAAATCTCGGAGATATCTCTTGCTTTCTCGCGCTCTTCCGTCTCCGACTGTTTCTCGTCCTTCTCCTTCTCCGATCCCCGCCGTCGATGTCGTCGTCGGTGGTGGTGGTGGTGGTGGTGAGTTTGTTCGTCGTTCGTCGGTTGTTTACGATAATGATAACAGTCATCGGAGATCGGATTCTGATTTGGTTTCTTTGAAGATTAGTCTCTTAGGAGATCCAGAAATCGGAAAAACTAGCTTCCTGGCGAAATATGTTGGAGAAGAGAAAGAAGTAGAAATGAGAGAATTGGAGAAAGGTATAAATTGTACGGACAAGACGTTATACATGGGAGGTGCTCGCATTTCATATAGTATCTGGGAATTAGAAGCTGAGAGATCACGAGATCAAATCCCTGTGGCTTGCAAGGACTCTGTTGCCATTCTCTTTATGTTTGATTTAACCAGTCGTTGCACGCTTAATAGTGTCATTAGCTGGTATCAACAAGCTAGGAAGTCTAATCAGACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTGAATAAGATCTTTAAGTTTGTGACGGCGAAGCTCTTCGACTTACCATGGACGGTGGAGCGCAATCTCACAATCGGAGAACCAATCATCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

291

Amino Acids

32.81

Weight (kDa)

9.63

Isoelectric Point (pI)

62.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	108 - 221	3.9e-11	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	108 - 222	8e-11	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21700 AT3G21700 AT3G21700
fragaria_vesca	FvH4_6g43310
malus_domestica	MD09G1069800.v1.1 MD17G1096000.v1.1
pyrus_communis	pycom09g02990
rosa_chinensis	RchiOBHm_Chr2g0159641
rosa_laevigata	RLG00000021170
rosa_multiflora	Rmu_sc0004966.1_g000011 Rmu_sc0011502.1_g000008
rosa_roxburghii	Rroxscaffold_2G00090360
rosa_rugosa	Rorug02G0477500
rosa_samantha	Rh2AG544300 Rh2BG557100 Rh2CG527400 Rh2DG566200
rosa_wichuraiana	Rw2G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	156, 740
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	193, 335
AfaI	GTAC	2 cut(s)	118, 433
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	3 cut(s)	121, 366, 708
AluBI	AGCT	6 cut(s)	363, 494, 597, 611, 676, 811
AluI	AGCT	6 cut(s)	363, 494, 597, 611, 676, 811
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	2 cut(s)	171, 335
AlwI	GGATC	2 cut(s)	193, 335
Ama87I	CYCGRG	1 cut(s)	754
Asp700I	GAANNNNTTC	1 cut(s)	812
AspLEI	GCGC	2 cut(s)	158, 840
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	704
AvaI	CYCGRG	1 cut(s)	754
BauI	CACGAG	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	463
BceAI	ACGGC	3 cut(s)	191, 645, 819
BciT130I	CCWGG	3 cut(s)	123, 368, 710
BcoDI	GTCTC	2 cut(s)	171, 335
BfaI	CTAG	4 cut(s)	360, 612, 705, 874
BglII	AGATCT	1 cut(s)	786
Bme1390I	CCNGG	3 cut(s)	123, 368, 710
BmeT110I	CYCGRG	1 cut(s)	754
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	3 cut(s)	123, 368, 710
BmtI	GCTAGC	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	824
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	567, 638
Bse3DI	GCAATG	1 cut(s)	698
BseBI	CCWGG	3 cut(s)	123, 368, 710
BseDI	CCNNGG	1 cut(s)	824
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	567, 638
Bsh1236I	CGCG	2 cut(s)	156, 740
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	1 cut(s)	754
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	171, 335
BsmBI	CGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	754
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	7 cut(s)	198, 296, 340, 500, 508, 685, 786
Bsp19I	CCATGG	1 cut(s)	824
BspACI	CCGC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	2 cut(s)	156, 740
BspLI	GGNNCC	1 cut(s)	652
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	2 cut(s)	193, 335
BspQI	GCTCTTC	3 cut(s)	165, 752, 818
BspT104I	TTCGAA	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	567, 638
BssECI	CCNNGG	1 cut(s)	824
BssMI	GATC	7 cut(s)	198, 296, 340, 500, 508, 685, 786
BssSI	CACGAG	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	824
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	3 cut(s)	123, 368, 710
Bst4CI	ACNGT	4 cut(s)	90, 175, 287, 832
Bst6I	CTCTTC	4 cut(s)	165, 381, 752, 818
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	463, 526, 578, 706
BstDEI	CTNAG	3 cut(s)	41, 334, 495
BstDSI	CCRYGG	1 cut(s)	824
BstFNI	CGCG	2 cut(s)	156, 740
BstHHI	GCGC	2 cut(s)	158, 840
BstKTI	GATC	7 cut(s)	201, 299, 343, 503, 511, 688, 789
BstMAI	GTCTC	2 cut(s)	171, 335
BstMBI	GATC	7 cut(s)	198, 296, 340, 500, 508, 685, 786
BstMWI	GCNNNNNNNGC	2 cut(s)	710, 737
BstNI	CCWGG	3 cut(s)	123, 368, 710
BstSCI	CCNGG	3 cut(s)	121, 366, 708
BstUI	CGCG	2 cut(s)	156, 740
BstX2I	RGATCY	2 cut(s)	340, 786
BstYI	RGATCY	2 cut(s)	340, 786
BtgI	CCRYGG	1 cut(s)	824
Cac8I	GCNNGC	4 cut(s)	463, 526, 578, 706
CfoI	GCGC	2 cut(s)	158, 840
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	2 cut(s)	117, 432
CviAII	CATG	2 cut(s)	451, 825
CviQI	GTAC	2 cut(s)	117, 432
DdeI	CTNAG	3 cut(s)	41, 334, 495
DpnI	GATC	7 cut(s)	200, 298, 342, 502, 510, 687, 788
DpnII	GATC	7 cut(s)	198, 296, 340, 500, 508, 685, 786
DraI	TTTAAA	1 cut(s)	735
Eam1104I	CTCTTC	4 cut(s)	165, 381, 752, 818
EarI	CTCTTC	4 cut(s)	165, 381, 752, 818
Eco130I	CCWWGG	1 cut(s)	824
Eco32I	GATATC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	754
EcoRII	CCWGG	3 cut(s)	121, 366, 708
EcoRV	GATATC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	824
ErhI	CCWWGG	1 cut(s)	824
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	2 cut(s)	454, 828
FatI	CATG	2 cut(s)	450, 824
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	721
FspBI	CTAG	4 cut(s)	360, 612, 705, 874
GlaI	GCGC	2 cut(s)	157, 839
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	2 cut(s)	158, 840
Hin1II	CATG	2 cut(s)	454, 828
Hin6I	GCGC	2 cut(s)	156, 838
HinP1I	GCGC	2 cut(s)	156, 838
HinfI	GANTC	7 cut(s)	30, 55, 70, 81, 105, 302, 533
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	344, 504, 754
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	8 cut(s)	63, 81, 212, 221, 224, 258, 265, 745
HpyAV	CCTTC	3 cut(s)	195, 201, 721
HpyCH4III	ACNGT	4 cut(s)	90, 175, 287, 832
HpyCH4IV	ACGT	2 cut(s)	443, 777
HpyCH4V	TGCA	3 cut(s)	528, 576, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	710, 737
HpyF3I	CTNAG	3 cut(s)	41, 334, 495
HpySE526I	ACGT	2 cut(s)	443, 777
Hsp92II	CATG	2 cut(s)	454, 828
HspAI	GCGC	2 cut(s)	156, 838
Kzo9I	GATC	7 cut(s)	198, 296, 340, 500, 508, 685, 786
LguI	GCTCTTC	3 cut(s)	165, 752, 818
LmnI	GCTCC	1 cut(s)	835
MaeI	CTAG	4 cut(s)	360, 612, 705, 874
MaeII	ACGT	2 cut(s)	443, 777
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	7 cut(s)	200, 298, 342, 502, 510, 687, 788
MboI	GATC	7 cut(s)	198, 296, 340, 500, 508, 685, 786
MboII	GAAGA	6 cut(s)	152, 334, 398, 739, 742, 805
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	2 cut(s)	340, 786
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	5 cut(s)	21, 410, 427, 485, 699
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	4 cut(s)	41, 100, 194, 361
MnlI	CCTC	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	812
MseI	TTAA	5 cut(s)	18, 563, 582, 734, 792
MslI	CAYNNNNRTG	1 cut(s)	776
MspR9I	CCNGG	3 cut(s)	123, 368, 710
MunI	CAATTG	1 cut(s)	699
MvaI	CCWGG	3 cut(s)	123, 368, 710
MvnI	CGCG	2 cut(s)	156, 740
MwoI	GCNNNNNNNGC	2 cut(s)	710, 737
NcoI	CCATGG	1 cut(s)	824
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	7 cut(s)	198, 296, 340, 500, 508, 685, 786
NheI	GCTAGC	1 cut(s)	704
NlaIII	CATG	2 cut(s)	454, 828
NlaIV	GGNNCC	1 cut(s)	652
NmuCI	GTSAC	1 cut(s)	799
NspV	TTCGAA	1 cut(s)	28
PaeR7I	CTCGAG	1 cut(s)	754
PciSI	GCTCTTC	3 cut(s)	165, 752, 818
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 440
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	6 cut(s)	30, 55, 70, 81, 105, 302
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp6I	CCWGG	3 cut(s)	121, 366, 708
PspGI	CCWGG	3 cut(s)	121, 366, 708
PspN4I	GGNNCC	1 cut(s)	652
PsuI	RGATCY	2 cut(s)	340, 786
RsaI	GTAC	2 cut(s)	118, 433
RsaNI	GTAC	2 cut(s)	117, 432
RseI	CAYNNNNRTG	1 cut(s)	776
SapI	GCTCTTC	3 cut(s)	165, 752, 818
SaqAI	TTAA	5 cut(s)	18, 563, 582, 734, 792
Sau3AI	GATC	7 cut(s)	198, 296, 340, 500, 508, 685, 786
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	3 cut(s)	123, 368, 710
SduI	GDGCHC	1 cut(s)	463
Sfr274I	CTCGAG	1 cut(s)	754
SfuI	TTCGAA	1 cut(s)	28
SlaI	CTCGAG	1 cut(s)	754
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	1 cut(s)	754
SmoI	CTYRAG	1 cut(s)	754
Sse9I	AATT	5 cut(s)	21, 410, 427, 485, 699
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	4 cut(s)	360, 612, 705, 874
StyD4I	CCNGG	3 cut(s)	121, 366, 708
StyI	CCWWGG	1 cut(s)	824
TaaI	ACNGT	4 cut(s)	90, 175, 287, 832
TaiI	ACGT	2 cut(s)	446, 780
TaqI	TCGA	5 cut(s)	28, 210, 755, 816, 867
TasI	AATT	5 cut(s)	21, 410, 427, 485, 699
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	6 cut(s)	30, 55, 70, 81, 105, 302
Tru1I	TTAA	5 cut(s)	18, 563, 582, 734, 792
Tru9I	TTAA	5 cut(s)	18, 563, 582, 734, 792
TseFI	GTSAC	1 cut(s)	799
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	2 cut(s)	459, 753
TspGWI	ACGGA	2 cut(s)	153, 449
XhoI	CTCGAG	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	4 cut(s)	360, 612, 705, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.