Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012817

Physical Location & Seq

Genomic Coordinates Forward (+)

72570069 .. 72571919

Gene Structure 1851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTCCAGTACACCCTCCGGCGAAGAGTTCACCGTCGCGTTTTGGTTCTCCGCCGTTGCATTCGACACGTCATGGATAGGATTATTACTTGCTGTTTAGGAAAGCCGGTTCACTACCGGATGCTGCCGATTTCGGTTATGACTCCTCCTTCCGGCTCTATCGCCAGCCCTGACTCCGCTGTCAAGGCCGTCCGGCGTCAGAAGTCGTCGGGTGCTAGGAGTGGTCAGGAAAGCGTAGACTCCAACTTGGTCTCATTGAAGATTAGTCTGTTAGGGGATAGCCAAATCGGAAAGACGAGCTTTTTGGTAAAGTACGTGGGAGATGATGAGAAAGAAGGAGAGCCACAGACCACAGGATTGAATTTCATGGATAAAACTCTAATCGTCAGAGATGCTCGGATTTCGTATAGTATTTGGGAAGTTGGAGGTGATAAGAAATCCCAGGACAATATGCAGGTTGCTTGCATGGATTCTGTAGCAATTTTGTTCATGTTCGACTTGACAAGTCGTTGTACGTTAAATAGTATTCCAACATGGTATCACCGAGCCAGAAAATGGAATCAGACGGCAATCCCAATATTGATAGGAACAAAGTTCGATGACTTCATCCAGCTCCCATTAGATTTGCAATGGGCAATCGCAAGCCAGGCAAGAGCTTATGCAAAGGCATTCAACGCAACACTTTTCTTTTCCAGTGCAACCTACAACATAAATGTGAACAAGATCTTCAAATTCATCACAGCCAAGCTCTTTGACTTACCGTGGACCGTCGAGCGGAATCTGACCATTGGAGAGCCCATCATTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

271

Amino Acids

30.6

Weight (kDa)

9.63

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	87 - 250	5.8e-21	Ras family
Roc	PF08477	87 - 200	2.6e-18	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21700 AT3G21700 AT3G21700
fragaria_vesca	FvH4_6g43310
malus_domestica	MD09G1069800.v1.1 MD17G1096000.v1.1
pyrus_communis	pycom09g02990
rosa_chinensis	RchiOBHm_Chr2g0159641
rosa_laevigata	RLG00000021170
rosa_multiflora	Rmu_sc0004966.1_g000011 Rmu_sc0011502.1_g000008
rosa_roxburghii	Rroxscaffold_2G00090360
rosa_rugosa	Rorug02G0477500
rosa_samantha	Rh2AG544300 Rh2BG557100 Rh2CG527400 Rh2DG566200
rosa_wichuraiana	Rw2G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccBSI	CCGCTC	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	39
AciI	CCGC	3 cut(s)	52, 177, 775
AcsI	RAATTY	2 cut(s)	361, 731
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	3 cut(s)	11, 314, 514
AfiI	CCNNNNNNNGG	3 cut(s)	152, 555, 774
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	4 cut(s)	259, 361, 673, 730
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	441, 645
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	4 cut(s)	300, 613, 656, 748
AluI	AGCT	4 cut(s)	300, 613, 656, 748
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	2 cut(s)	361, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	2 cut(s)	4, 765
AsuHPI	GGTGA	3 cut(s)	23, 440, 533
AvaII	GGWCC	2 cut(s)	4, 765
BanII	GRGCYC	1 cut(s)	798
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	806
BceAI	ACGGC	3 cut(s)	39, 173, 582
BciT130I	CCWGG	2 cut(s)	443, 647
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	216, 811
BfmI	CTRYAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	443, 647
Bme18I	GGWCC	2 cut(s)	4, 765
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	4, 765
BmrFI	CCNGG	2 cut(s)	443, 647
BmsI	GCATC	2 cut(s)	111, 382
BsaAI	YACGTR	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	441, 761
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 555, 774
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	7, 693
Bse3DI	GCAATG	1 cut(s)	635
BseBI	CCWGG	2 cut(s)	443, 647
BseDI	CCNNGG	2 cut(s)	441, 761
BseGI	GGATG	2 cut(s)	126, 606
BseLI	CCNNNNNNNGG	3 cut(s)	152, 555, 774
BseMI	GCAATG	1 cut(s)	635
BseNI	ACTGG	2 cut(s)	7, 693
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	5 cut(s)	19, 107, 118, 153, 193
BslI	CCNNNNNNNGG	3 cut(s)	152, 555, 774
BsmAI	GTCTC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	60, 668
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	1 cut(s)	723
BspACI	CCGC	3 cut(s)	52, 177, 775
BspANI	GGCC	1 cut(s)	188
BspFNI	CGCG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	7, 693
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	441, 761
BssMI	GATC	1 cut(s)	723
BssNI	GRCGYC	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	443, 647
Bst4CI	ACNGT	3 cut(s)	35, 762, 769
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	3 cut(s)	166, 463, 643
BstDSI	CCRYGG	1 cut(s)	761
BstF5I	GGATG	2 cut(s)	126, 606
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	726
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	723
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 647, 674
BstNI	CCWGG	2 cut(s)	443, 647
BstSCI	CCNGG	2 cut(s)	441, 645
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	723
BstYI	RGATCY	1 cut(s)	723
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	761
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	126, 606
BtsIMutI	CAGTG	1 cut(s)	700
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	166, 463, 643
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	4, 765
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	10, 313, 513
CviAII	CATG	5 cut(s)	73, 367, 466, 490, 534
CviQI	GTAC	3 cut(s)	10, 313, 513
DpnI	GATC	1 cut(s)	725
DpnII	GATC	1 cut(s)	723
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	4, 765
EcoRII	CCWGG	2 cut(s)	441, 645
EcoT38I	GRGCYC	1 cut(s)	798
FaeI	CATG	5 cut(s)	76, 370, 469, 493, 537
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	5 cut(s)	72, 366, 465, 489, 533
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	2 cut(s)	133, 593
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	2 cut(s)	216, 811
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	5 cut(s)	19, 107, 118, 153, 193
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	5 cut(s)	76, 370, 469, 493, 537
HinfI	GANTC	6 cut(s)	142, 173, 239, 470, 559, 778
HpaII	CCGG	5 cut(s)	19, 107, 118, 153, 193
HphI	GGTGA	3 cut(s)	23, 440, 533
Hpy166II	GTNNAC	6 cut(s)	12, 31, 112, 238, 718, 765
Hpy188I	TCNGA	6 cut(s)	201, 290, 389, 399, 564, 783
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	6 cut(s)	12, 31, 112, 238, 718, 765
Hpy99I	CGWCG	3 cut(s)	39, 211, 773
HpyAV	CCTTC	2 cut(s)	159, 329
HpyCH4III	ACNGT	3 cut(s)	35, 762, 769
HpyCH4IV	ACGT	3 cut(s)	69, 315, 515
HpyCH4V	TGCA	6 cut(s)	60, 454, 465, 628, 662, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 647, 674
HpySE526I	ACGT	3 cut(s)	69, 315, 515
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	76, 370, 469, 493, 537
Kzo9I	GATC	1 cut(s)	723
LmnI	GCTCC	1 cut(s)	618
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	111, 382
MaeI	CTAG	2 cut(s)	216, 811
MaeII	ACGT	3 cut(s)	69, 315, 515
MalI	GATC	1 cut(s)	725
MbiI	CCGCTC	1 cut(s)	775
MboI	GATC	1 cut(s)	723
MboII	GAAGA	3 cut(s)	36, 271, 718
MflI	RGATCY	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	798
MluCI	AATT	3 cut(s)	361, 480, 731
MlyI	GAGTC	3 cut(s)	136, 167, 233
MmeI	TCCRAC	3 cut(s)	267, 403, 554
MnlI	CCTC	3 cut(s)	26, 156, 419
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	5 cut(s)	19, 107, 118, 153, 193
MspR9I	CCNGG	2 cut(s)	443, 647
Mva1269I	GAATGC	2 cut(s)	60, 668
MvaI	CCWGG	2 cut(s)	443, 647
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	185, 647, 674
NdeII	GATC	1 cut(s)	723
NlaIII	CATG	5 cut(s)	76, 370, 469, 493, 537
PctI	GAATGC	2 cut(s)	60, 668
PfeI	GAWTC	3 cut(s)	470, 559, 778
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	3 cut(s)	136, 167, 233
PpsI	GAGTC	3 cut(s)	136, 167, 233
Ppu21I	YACGTR	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	441, 645
PspGI	CCWGG	2 cut(s)	441, 645
PspPI	GGNCC	2 cut(s)	4, 765
PsuI	RGATCY	1 cut(s)	723
RsaI	GTAC	3 cut(s)	11, 314, 514
RsaNI	GTAC	3 cut(s)	10, 313, 513
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	723
Sau96I	GGNCC	2 cut(s)	4, 765
SchI	GAGTC	3 cut(s)	136, 167, 233
ScrFI	CCNGG	2 cut(s)	443, 647
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	2 cut(s)	111, 382
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	4, 765
SmiMI	CAYNNNNRTG	1 cut(s)	713
Sse9I	AATT	3 cut(s)	361, 480, 731
SsiI	CCGC	3 cut(s)	52, 177, 775
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	2 cut(s)	216, 811
StyD4I	CCNGG	2 cut(s)	441, 645
TaaI	ACNGT	3 cut(s)	35, 762, 769
TaiI	ACGT	3 cut(s)	72, 318, 518
TaqI	TCGA	4 cut(s)	64, 495, 597, 771
TasI	AATT	3 cut(s)	361, 480, 731
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	470, 559, 778
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	355, 478, 595, 724
TspRI	CASTG	1 cut(s)	700
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	4, 765
XapI	RAATTY	2 cut(s)	361, 731
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	2 cut(s)	216, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.