Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012817

Physical Location & Seq

Genomic Coordinates Reverse (-)

8102376 .. 8105419

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1096000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGATACGCCACTTCAGCCTCAGGAGAAGAGTTAAACGCCGCGTCTTGGTCCTCCGCCGCGTCATGGACCGGCTGCTCATGTGTTGTTTAGGAAAGCCGGTCCAGTACAGTATGCTGCCCATTTCGGCCGCCATGTCGTCGGCGAACGACACCCCTTCCACTTTTGCGTCTTCGTCGCCGTCCTCGAAATCAAGGGATCTCACGTGTCATCACCTTCATCGGAACAAGAGTAGCCACCGTGTTAGCAGCTCCGATTTAGTGCCGTTGAAGATCAGCCTCTTGGGAGATAGCCAGATTGGAAAAACTAGCTTTGTGGTAAAGTATGTAGGAGATGATGAGAAGGAAGAGGGAGGAGAGACAGACACCACCGGATTAAATTCAATGGATAAGACATTGTTGGTCAGTGGTGCACGGATTTCCTATAGTATTTGGGAAGTTGGAGGTGATGTAAAATCCCAGGATAACATTCCTGTTGCTTGCAAGGATTCCGTAGCTATTTTGTTCATGTTTGATTTAACTAGTCGGTGTACGTTAAATAGTGTCATAACATGGTATCACCGAGCAAGGAAATGGAATCAGACGGCAATCCCAATATTAATTGGAACAAAGTTCGATGATTTCATCCAACTCCCCATAGATTTGCAATGGACAATTGCAAGTCAGGCAAGAGCATATGCAAAGGCACTAAACGCAACGTTGTTCTTTTCGAGTGCAACATACAACATAAACGTGAACAAGATCTTCAAATTCATAACGGCCAAGCTCTTCGACTTACCTTGGACAGTGGAGCGCAATCTGACCATCGGAGAGCCCATCATTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

276

Amino Acids

30.92

Weight (kDa)

9.47

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	90 - 255	1.7e-18	Ras family
Roc	PF08477	90 - 205	8e-15	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21700 AT3G21700 AT3G21700
fragaria_vesca	FvH4_6g43310
malus_domestica	MD09G1069800.v1.1 MD17G1096000.v1.1
pyrus_communis	pycom09g02990
rosa_chinensis	RchiOBHm_Chr2g0159641
rosa_laevigata	RLG00000021170
rosa_multiflora	Rmu_sc0004966.1_g000011 Rmu_sc0011502.1_g000008
rosa_roxburghii	Rroxscaffold_2G00090360
rosa_rugosa	Rorug02G0477500
rosa_samantha	Rh2AG544300 Rh2BG557100 Rh2CG527400 Rh2DG566200
rosa_wichuraiana	Rw2G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	42, 60
AciI	CCGC	4 cut(s)	40, 55, 58, 129
AclI	AACGTT	1 cut(s)	695
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	2 cut(s)	126, 756
AcsI	RAATTY	2 cut(s)	376, 746
AcvI	CACGTG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	107, 529
AfiI	CCNNNNNNNGG	2 cut(s)	46, 64
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	268, 381, 745
AhlI	ACTAGT	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	4 cut(s)	249, 309, 494, 763
AluI	AGCT	4 cut(s)	249, 309, 494, 763
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	350
Alw44I	GTGCAC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	126, 756
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	73, 115, 246
ApoI	RAATTY	2 cut(s)	376, 746
AseI	ATTAAT	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	3 cut(s)	49, 67, 100
AsuHPI	GGTGA	3 cut(s)	203, 455, 548
AvaII	GGWCC	3 cut(s)	49, 67, 100
AxyI	CCTNAGG	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	813
BbrPI	CACGTG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	60, 102, 258
BccI	CCATC	2 cut(s)	809, 821
BceAI	ACGGC	4 cut(s)	163, 247, 597, 771
BciT130I	CCWGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	3 cut(s)	306, 519, 826
BfmI	CTRYAG	1 cut(s)	421
BglII	AGATCT	1 cut(s)	738
BisI	GCNGC	6 cut(s)	40, 58, 74, 116, 129, 247
BlsI	GCNGC	6 cut(s)	41, 59, 75, 117, 130, 248
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	3 cut(s)	49, 67, 100
BmgT120I	GGNCC	3 cut(s)	49, 67, 100
BmrFI	CCNGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	456, 776
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 64
Bse118I	RCCGGY	2 cut(s)	69, 97
Bse1I	ACTGG	1 cut(s)	103
Bse21I	CCTNAGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	456, 776
BseGI	GGATG	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	46, 64
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	412
BseX3I	CGGCCG	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	60, 102, 258
Bsh1236I	CGCG	2 cut(s)	42, 60
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	128, 758
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	3 cut(s)	70, 98, 369
BslI	CCNNNNNNNGG	2 cut(s)	46, 64
BsmAI	GTCTC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	128, 758
Bsp1286I	GDGCHC	2 cut(s)	412, 813
Bsp143I	GATC	3 cut(s)	196, 270, 738
BspACI	CCGC	4 cut(s)	40, 55, 58, 129
BspANI	GGCC	2 cut(s)	128, 758
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	2 cut(s)	42, 60
BspPI	GGATC	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	650
BsrFI	RCCGGY	2 cut(s)	69, 97
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	2 cut(s)	69, 97
BssECI	CCNNGG	2 cut(s)	456, 776
BssMI	GATC	3 cut(s)	196, 270, 738
BssT1I	CCWWGG	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	110, 239, 784
Bst6I	CTCTTC	3 cut(s)	22, 339, 770
BstBAI	YACGTR	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	621
BstFNI	CGCG	2 cut(s)	42, 60
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	3 cut(s)	199, 273, 741
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	3 cut(s)	196, 270, 738
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 662, 689
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	421
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	2 cut(s)	42, 60
BstV1I	GCAGC	3 cut(s)	60, 102, 258
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	196, 738
BstYI	RGATCY	2 cut(s)	196, 738
BstZI	CGGCCG	1 cut(s)	126
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	128, 758
BtsCI	GGATG	1 cut(s)	621
BtsIMutI	CAGTG	2 cut(s)	409, 789
Cac8I	GCNNGC	1 cut(s)	478
CfoI	GCGC	1 cut(s)	792
Cfr10I	RCCGGY	2 cut(s)	69, 97
Cfr13I	GGNCC	3 cut(s)	49, 67, 100
CseI	GACGC	3 cut(s)	31, 49, 156
Csp6I	GTAC	2 cut(s)	106, 528
CviAII	CATG	5 cut(s)	64, 79, 133, 505, 549
CviQI	GTAC	2 cut(s)	106, 528
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	198, 272, 740
DpnII	GATC	3 cut(s)	196, 270, 738
EaeI	YGGCCR	2 cut(s)	126, 756
EagI	CGGCCG	1 cut(s)	126
Eam1104I	CTCTTC	3 cut(s)	22, 339, 770
EarI	CTCTTC	3 cut(s)	22, 339, 770
EciI	GGCGGA	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	776
Eco24I	GRGCYC	1 cut(s)	813
Eco47I	GGWCC	3 cut(s)	49, 67, 100
Eco52I	CGGCCG	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	204
Eco81I	CCTNAGG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	776
EcoT38I	GRGCYC	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	776
FaeI	CATG	5 cut(s)	67, 82, 136, 508, 552
FatI	CATG	5 cut(s)	63, 78, 132, 504, 548
FauNDI	CATATG	1 cut(s)	673
Fnu4HI	GCNGC	6 cut(s)	40, 58, 74, 116, 129, 247
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	6 cut(s)	40, 58, 74, 116, 129, 247
FspBI	CTAG	3 cut(s)	306, 519, 826
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	6 cut(s)	40, 58, 74, 116, 129, 247
HaeIII	GGCC	2 cut(s)	128, 758
HapII	CCGG	3 cut(s)	70, 98, 369
HgaI	GACGC	3 cut(s)	31, 49, 156
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	5 cut(s)	67, 82, 136, 508, 552
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HinfI	GANTC	2 cut(s)	485, 574
HpaII	CCGG	3 cut(s)	70, 98, 369
HphI	GGTGA	3 cut(s)	203, 455, 548
Hpy166II	GTNNAC	3 cut(s)	410, 528, 733
Hpy188I	TCNGA	5 cut(s)	222, 253, 579, 798, 806
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	3 cut(s)	410, 528, 733
Hpy99I	CGWCG	2 cut(s)	142, 178
HpyAV	CCTTC	3 cut(s)	165, 224, 334
HpyCH4III	ACNGT	3 cut(s)	110, 239, 784
HpyCH4IV	ACGT	4 cut(s)	203, 530, 695, 729
HpyCH4V	TGCA	6 cut(s)	410, 480, 643, 656, 677, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 662, 689
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	4 cut(s)	203, 530, 695, 729
Hsp92II	CATG	5 cut(s)	67, 82, 136, 508, 552
HspAI	GCGC	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	196, 270, 738
LguI	GCTCTTC	1 cut(s)	770
LmnI	GCTCC	2 cut(s)	254, 787
Lsp1109I	GCAGC	3 cut(s)	60, 102, 258
MaeI	CTAG	3 cut(s)	306, 519, 826
MaeII	ACGT	4 cut(s)	203, 530, 695, 729
MalI	GATC	3 cut(s)	198, 272, 740
MboI	GATC	3 cut(s)	196, 270, 738
MboII	GAAGA	6 cut(s)	39, 162, 280, 356, 733, 757
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	2 cut(s)	196, 738
MhlI	GDGCHC	2 cut(s)	412, 813
MluCI	AATT	4 cut(s)	376, 597, 651, 746
MmeI	TCCRAC	2 cut(s)	418, 649
MnlI	CCTC	7 cut(s)	29, 62, 193, 287, 340, 344, 434
MseI	TTAA	5 cut(s)	33, 374, 515, 533, 596
MslI	CAYNNNNRTG	1 cut(s)	728
MspI	CCGG	3 cut(s)	70, 98, 369
MspR9I	CCNGG	1 cut(s)	458
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	2 cut(s)	42, 60
MwoI	GCNNNNNNNGC	3 cut(s)	15, 662, 689
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	3 cut(s)	196, 270, 738
NlaIII	CATG	5 cut(s)	67, 82, 136, 508, 552
PciSI	GCTCTTC	1 cut(s)	770
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	485, 574
PkrI	GCNGC	6 cut(s)	41, 59, 75, 117, 130, 248
PmaCI	CACGTG	1 cut(s)	204
PmlI	CACGTG	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	204
PshBI	ATTAAT	1 cut(s)	596
Psp1406I	AACGTT	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	456
PspCI	CACGTG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	456
PspPI	GGNCC	3 cut(s)	49, 67, 100
PsuI	RGATCY	2 cut(s)	196, 738
RsaI	GTAC	2 cut(s)	107, 529
RsaNI	GTAC	2 cut(s)	106, 528
RseI	CAYNNNNRTG	1 cut(s)	728
SapI	GCTCTTC	1 cut(s)	770
SaqAI	TTAA	5 cut(s)	33, 374, 515, 533, 596
SatI	GCNGC	6 cut(s)	40, 58, 74, 116, 129, 247
Sau3AI	GATC	3 cut(s)	196, 270, 738
Sau96I	GGNCC	3 cut(s)	49, 67, 100
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	2 cut(s)	412, 813
SfcI	CTRYAG	1 cut(s)	421
SinI	GGWCC	3 cut(s)	49, 67, 100
SmiMI	CAYNNNNRTG	1 cut(s)	728
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	4 cut(s)	376, 597, 651, 746
SsiI	CCGC	4 cut(s)	40, 55, 58, 129
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	3 cut(s)	306, 519, 826
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	3 cut(s)	110, 239, 784
TaiI	ACGT	4 cut(s)	206, 533, 698, 732
TaqI	TCGA	4 cut(s)	185, 612, 707, 768
TasI	AATT	4 cut(s)	376, 597, 651, 746
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	3 cut(s)	42, 60, 131
TfiI	GAWTC	2 cut(s)	485, 574
Tru1I	TTAA	5 cut(s)	33, 374, 515, 533, 596
Tru9I	TTAA	5 cut(s)	33, 374, 515, 533, 596
TscAI	CASTG	2 cut(s)	409, 789
TseI	GCWGC	3 cut(s)	73, 115, 246
TspDTI	ATGAA	4 cut(s)	206, 493, 610, 739
TspGWI	ACGGA	2 cut(s)	427, 478
TspRI	CASTG	2 cut(s)	409, 789
VneI	GTGCAC	1 cut(s)	408
VpaK11BI	GGWCC	3 cut(s)	49, 67, 100
VspI	ATTAAT	1 cut(s)	596
XapI	RAATTY	2 cut(s)	376, 746
XspI	CTAG	3 cut(s)	306, 519, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.