Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011502.1

Orthogroup ID

OG0012817

Physical Location & Seq

Genomic Coordinates Reverse (-)

24788 .. 26664

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011502.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggtccagtacaccctccggcgaagagttcaccgtcgcgttttggttctccgccgttgcattcgacacgtcatggataggattattacttgctgtttaggaaagccggttcactaccggatgctgccgatttcggttatgactcctccttccggctctatcgccagccctgactctgctgtcaagtccgtccggcgtcagaagtcgtcggctgctacgagtggtcgggaaagcgtagactccaacttggtctcattgaagattagtctgttaggggatagccaaatcggaaagacgagctttttggtaaagtacgtgggagatgatgagaaaggagagccacagactacagggttgaatttcatggataaaactctaatcgtcagagatgctcggatttcgtatagtatttgggaagttggaggtgataagaaatcccaggacaatatgcaggttgcttgcatggattccgtagcaattttgttcatgttcgacttgacaagtcgttgtacgttaaatagtattccaacatggtatcaccgagccagaaaatggaatcagacggcaatcccaatattgataggaacaaagttcgatgacttcatccagctcccattagatttgcaatgggcaatcgcgagtcaggcaagagcttatgcaaaggcattcaacgcaacacttttcttttccagtgcaacctacaacataaatgtgaacaagatcttcaaattcatcacagccaagctctttgacttaccgtggaccgtcgagcgcaatctgaccattggagagcccattattgatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

269

Amino Acids

30.48

Weight (kDa)

9.7

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21700 AT3G21700 AT3G21700
fragaria_vesca	FvH4_6g43310
malus_domestica	MD09G1069800.v1.1 MD17G1096000.v1.1
pyrus_communis	pycom09g02990
rosa_chinensis	RchiOBHm_Chr2g0159641
rosa_laevigata	RLG00000021170
rosa_multiflora	Rmu_sc0004966.1_g000011 Rmu_sc0011502.1_g000008
rosa_roxburghii	Rroxscaffold_2G00090360
rosa_rugosa	Rorug02G0477500
rosa_samantha	Rh2AG544300 Rh2BG557100 Rh2CG527400 Rh2DG566200
rosa_wichuraiana	Rw2G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	39, 638
AciI	CCGC	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	358, 728
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	3 cut(s)	11, 314, 511
AfiI	CCNNNNNNNGG	2 cut(s)	152, 552
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	4 cut(s)	259, 358, 670, 727
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	438
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	4 cut(s)	300, 610, 653, 745
AluI	AGCT	4 cut(s)	300, 610, 653, 745
Alw26I	GTCTC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	124, 212
ApoI	RAATTY	2 cut(s)	358, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	2 cut(s)	4, 762
AsuHPI	GGTGA	3 cut(s)	23, 437, 530
AvaII	GGWCC	2 cut(s)	4, 762
BanII	GRGCYC	1 cut(s)	795
BbvI	GCAGC	2 cut(s)	111, 199
BceAI	ACGGC	2 cut(s)	39, 579
BciT130I	CCWGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	808
BfmI	CTRYAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	2 cut(s)	125, 213
BlsI	GCNGC	2 cut(s)	126, 214
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	2 cut(s)	4, 762
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	4, 762
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	2 cut(s)	111, 379
BsaAI	YACGTR	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	438, 758
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 552
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	7, 690
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	438, 758
BseGI	GGATG	2 cut(s)	126, 603
BseLI	CCNNNNNNNGG	2 cut(s)	152, 552
BseMI	GCAATG	1 cut(s)	632
BseNI	ACTGG	2 cut(s)	7, 690
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	111, 199
Bsh1236I	CGCG	2 cut(s)	39, 638
BsiSI	CCGG	5 cut(s)	19, 107, 118, 153, 193
BslI	CCNNNNNNNGG	2 cut(s)	152, 552
BsmAI	GTCTC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	60, 665
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	1 cut(s)	720
Bsp68I	TCGCGA	1 cut(s)	638
BspACI	CCGC	1 cut(s)	52
BspFNI	CGCG	2 cut(s)	39, 638
BspMI	ACCTGC	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	7, 690
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	438, 758
BssMI	GATC	1 cut(s)	720
BssNI	GRCGYC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	35, 759, 766
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	166, 460
BstDSI	CCRYGG	1 cut(s)	758
BstF5I	GGATG	2 cut(s)	126, 603
BstFNI	CGCG	2 cut(s)	39, 638
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	1 cut(s)	723
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	720
BstMWI	GCNNNNNNNGC	2 cut(s)	644, 671
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	2 cut(s)	39, 638
BstV1I	GCAGC	2 cut(s)	111, 199
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BtgI	CCRYGG	1 cut(s)	758
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	126, 603
BtsIMutI	CAGTG	1 cut(s)	697
BtuMI	TCGCGA	1 cut(s)	638
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	166, 460
CfoI	GCGC	1 cut(s)	774
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	4, 762
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	10, 313, 510
CviAII	CATG	5 cut(s)	73, 364, 463, 487, 531
CviQI	GTAC	3 cut(s)	10, 313, 510
DpnI	GATC	1 cut(s)	722
DpnII	GATC	1 cut(s)	720
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	795
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	4, 762
EcoRII	CCWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	795
FaeI	CATG	5 cut(s)	76, 367, 466, 490, 534
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	5 cut(s)	72, 363, 462, 486, 530
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	125, 213
FokI	GGATG	2 cut(s)	133, 590
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	2 cut(s)	125, 213
FspBI	CTAG	1 cut(s)	808
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	2 cut(s)	125, 213
HapII	CCGG	5 cut(s)	19, 107, 118, 153, 193
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	774
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	5 cut(s)	76, 367, 466, 490, 534
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	6 cut(s)	142, 173, 239, 467, 556, 640
HpaII	CCGG	5 cut(s)	19, 107, 118, 153, 193
HphI	GGTGA	3 cut(s)	23, 437, 530
Hpy166II	GTNNAC	6 cut(s)	12, 31, 112, 238, 715, 762
Hpy188I	TCNGA	6 cut(s)	201, 290, 386, 396, 561, 780
Hpy188III	TCNNGA	2 cut(s)	227, 637
Hpy8I	GTNNAC	6 cut(s)	12, 31, 112, 238, 715, 762
Hpy99I	CGWCG	3 cut(s)	39, 211, 770
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	3 cut(s)	35, 759, 766
HpyCH4IV	ACGT	3 cut(s)	69, 315, 512
HpyCH4V	TGCA	6 cut(s)	60, 451, 462, 625, 659, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	644, 671
HpySE526I	ACGT	3 cut(s)	69, 315, 512
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	76, 367, 466, 490, 534
HspAI	GCGC	1 cut(s)	772
Kzo9I	GATC	1 cut(s)	720
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	2 cut(s)	111, 199
LweI	GCATC	2 cut(s)	111, 379
MaeI	CTAG	1 cut(s)	808
MaeII	ACGT	3 cut(s)	69, 315, 512
MalI	GATC	1 cut(s)	722
MboI	GATC	1 cut(s)	720
MboII	GAAGA	3 cut(s)	36, 271, 715
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	3 cut(s)	358, 477, 728
MlyI	GAGTC	4 cut(s)	136, 167, 233, 649
MmeI	TCCRAC	3 cut(s)	267, 400, 551
MnlI	CCTC	3 cut(s)	26, 156, 416
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	1 cut(s)	710
MspI	CCGG	5 cut(s)	19, 107, 118, 153, 193
MspR9I	CCNGG	1 cut(s)	440
Mva1269I	GAATGC	2 cut(s)	60, 665
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	2 cut(s)	39, 638
MwoI	GCNNNNNNNGC	2 cut(s)	644, 671
NdeII	GATC	1 cut(s)	720
NlaIII	CATG	5 cut(s)	76, 367, 466, 490, 534
NruI	TCGCGA	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	2 cut(s)	60, 665
PfeI	GAWTC	2 cut(s)	467, 556
PflMI	CCANNNNNTGG	1 cut(s)	552
PkrI	GCNGC	2 cut(s)	126, 214
PleI	GAGTC	4 cut(s)	136, 167, 233, 648
PpsI	GAGTC	4 cut(s)	136, 167, 233, 648
Ppu21I	YACGTR	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	4, 762
PsuI	RGATCY	1 cut(s)	720
RruI	TCGCGA	1 cut(s)	638
RsaI	GTAC	3 cut(s)	11, 314, 511
RsaNI	GTAC	3 cut(s)	10, 313, 510
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	2 cut(s)	125, 213
Sau3AI	GATC	1 cut(s)	720
Sau96I	GGNCC	2 cut(s)	4, 762
SchI	GAGTC	4 cut(s)	136, 167, 233, 649
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	2 cut(s)	111, 379
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	2 cut(s)	4, 762
SmiMI	CAYNNNNRTG	1 cut(s)	710
Sse9I	AATT	3 cut(s)	358, 477, 728
SsiI	CCGC	1 cut(s)	52
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	1 cut(s)	808
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	3 cut(s)	35, 759, 766
TaiI	ACGT	3 cut(s)	72, 318, 515
TaqI	TCGA	4 cut(s)	64, 492, 594, 768
TasI	AATT	3 cut(s)	358, 477, 728
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	467, 556
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	697
TseI	GCWGC	2 cut(s)	124, 212
TspDTI	ATGAA	4 cut(s)	352, 475, 592, 721
TspGWI	ACGGA	2 cut(s)	178, 460
TspRI	CASTG	1 cut(s)	697
Van91I	CCANNNNNTGG	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	4, 762
XapI	RAATTY	2 cut(s)	358, 728
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.