Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0012817

Physical Location & Seq

Genomic Coordinates Reverse (-)

4779404 .. 4782477

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1069800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGTATACCACTTCAGCCTCAGGAGAAGAGTTAGACGCCGCGTGTTGGTTCTCCGCCGCTGCATCCGCCGCGTCATGGACCGGCTGCTCATGTGTTGTTTAGGAAAGCCAGTCCGGTACAGGATGCTGCCCATTTCGGCCGCCATGTCCTCATCGAACGACACGCCTTCTTCCACTTTTGCGCCTTCGTCGCCGTCCTCGAAATCAAGGGACCTCACCTGTCATCAACTTCATCGTAACAAGAGTAGCCACCGTGATAGCAACTCGGATTTGGTGCCCTTAAAGATCAGCCTCTTGGGAGACAGCCAAATCGGAAAAACTAGCTTTGTGGTAAAGTACGTAGGAGATGATGAGAAGGAAGAGGGAGGAGAGACAGACACCGCAGGATTAAATTCCATGGATAAGACATTGTTGGTCCGTGGTGCAAGGATTTCCTATAGTATTTGGGAAGTTGGAGGTGATGTAAAATCCCAGGATAATATTCCCGTTGCATGCAAGGACTCCGTAGCTATTTTGTTCATGTTTGATTTAACAAGTCGGTGTACTTTAAATAGTGTCATAACATGGTATCACCAAGCAAGGAAATGGAATCAGACGGCAATCCCAATATTAATTGGAACAAAGTTCGATGATTTCATCCAACTCCCCATAGATTTGCAATGGACAATTGCAAGTCAGGCAAGAGCATATGCAAAGGCCTTCAACGCGACGCTATTCTTTTCGAGTGCAACATACAACATAAACGTGAACAAGATCTTCAAATTCATAACGGCCAAGCTCTTCGACTTACCATGGACAGTGGAGCGCAATCTGACCATCGGAGAGCCCATCATCGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

281

Amino Acids

31.76

Weight (kDa)

9.57

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	95 - 259	6.4e-19	Ras family
Roc	PF08477	95 - 210	5.6e-15	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21700 AT3G21700 AT3G21700
fragaria_vesca	FvH4_6g43310
malus_domestica	MD09G1069800.v1.1 MD17G1096000.v1.1
pyrus_communis	pycom09g02990
rosa_chinensis	RchiOBHm_Chr2g0159641
rosa_laevigata	RLG00000021170
rosa_multiflora	Rmu_sc0004966.1_g000011 Rmu_sc0011502.1_g000008
rosa_roxburghii	Rroxscaffold_2G00090360
rosa_rugosa	Rorug02G0477500
rosa_samantha	Rh2AG544300 Rh2BG557100 Rh2CG527400 Rh2DG566200
rosa_wichuraiana	Rw2G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	3 cut(s)	42, 72, 707
AciI	CCGC	7 cut(s)	40, 55, 58, 67, 70, 141, 381
AcoI	YGGCCR	2 cut(s)	138, 771
AcsI	RAATTY	2 cut(s)	391, 761
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	3 cut(s)	119, 338, 544
AfiI	CCNNNNNNNGG	2 cut(s)	46, 76
AgsI	TTSAA	2 cut(s)	703, 760
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	3 cut(s)	324, 509, 778
AluI	AGCT	3 cut(s)	324, 509, 778
Alw26I	GTCTC	2 cut(s)	294, 365
AoxI	GGCC	3 cut(s)	138, 696, 771
ApeKI	GCWGC	3 cut(s)	60, 85, 127
ApoI	RAATTY	2 cut(s)	391, 761
AseI	ATTAAT	1 cut(s)	611
AspLEI	GCGC	2 cut(s)	184, 807
AspS9I	GGNCC	3 cut(s)	79, 211, 415
AsuHPI	GGTGA	3 cut(s)	208, 470, 563
AvaII	GGWCC	3 cut(s)	79, 211, 415
AxyI	CCTNAGG	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	828
BbvI	GCAGC	3 cut(s)	47, 72, 114
BccI	CCATC	2 cut(s)	824, 836
BceAI	ACGGC	3 cut(s)	178, 612, 786
BciT130I	CCWGG	1 cut(s)	473
BcoDI	GTCTC	2 cut(s)	294, 365
BfaI	CTAG	2 cut(s)	321, 841
BfmI	CTRYAG	1 cut(s)	436
BglII	AGATCT	1 cut(s)	753
BisI	GCNGC	7 cut(s)	40, 58, 61, 70, 86, 128, 141
BlsI	GCNGC	7 cut(s)	41, 59, 62, 71, 87, 129, 142
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	3 cut(s)	79, 211, 415
BmgT120I	GGNCC	3 cut(s)	79, 211, 415
BmiI	GGNNCC	2 cut(s)	212, 276
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	2 cut(s)	72, 114
Bsa29I	ATCGAT	1 cut(s)	834
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	396, 418, 471, 791
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 76
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	665
BseBI	CCWGG	1 cut(s)	473
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	4 cut(s)	396, 418, 471, 791
BseGI	GGATG	3 cut(s)	63, 129, 636
BseLI	CCNNNNNNNGG	2 cut(s)	46, 76
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	279
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	47, 72, 114
Bsh1236I	CGCG	3 cut(s)	42, 72, 707
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	140, 698, 773
BshNI	GGYRCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	834
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	82, 115
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	46, 76
BsmAI	GTCTC	2 cut(s)	294, 365
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	140, 698, 773
Bsp1286I	GDGCHC	2 cut(s)	279, 828
Bsp143I	GATC	2 cut(s)	285, 753
Bsp19I	CCATGG	2 cut(s)	396, 791
BspACI	CCGC	7 cut(s)	40, 55, 58, 67, 70, 141, 381
BspANI	GGCC	3 cut(s)	140, 698, 773
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	834
BspFNI	CGCG	3 cut(s)	42, 72, 707
BspLI	GGNNCC	2 cut(s)	212, 276
BspQI	GCTCTTC	1 cut(s)	785
BspT107I	GGYRCC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	4 cut(s)	396, 418, 471, 791
BssMI	GATC	2 cut(s)	285, 753
BssNAI	GTATAC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	396, 791
Bst1107I	GTATAC	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	254, 799
Bst6I	CTCTTC	3 cut(s)	22, 354, 785
BstACI	GRCGYC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	3 cut(s)	396, 418, 791
BstF5I	GGATG	3 cut(s)	63, 129, 636
BstFNI	CGCG	3 cut(s)	42, 72, 707
BstHHI	GCGC	2 cut(s)	184, 807
BstKTI	GATC	2 cut(s)	288, 756
BstMAI	GTCTC	2 cut(s)	294, 365
BstMBI	GATC	2 cut(s)	285, 753
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 69, 190, 677, 704
BstNI	CCWGG	1 cut(s)	473
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	471
BstSFI	CTRYAG	1 cut(s)	436
BstSLI	GKGCMC	1 cut(s)	279
BstSNI	TACGTA	1 cut(s)	340
BstUI	CGCG	3 cut(s)	42, 72, 707
BstV1I	GCAGC	3 cut(s)	47, 72, 114
BstX2I	RGATCY	1 cut(s)	753
BstYI	RGATCY	1 cut(s)	753
BstZ17I	GTATAC	1 cut(s)	7
BstZI	CGGCCG	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	834
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	140, 698, 773
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	3 cut(s)	396, 418, 791
BtsCI	GGATG	3 cut(s)	63, 129, 636
BtsIMutI	CAGTG	1 cut(s)	804
Cac8I	GCNNGC	1 cut(s)	493
CfoI	GCGC	2 cut(s)	184, 807
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	79, 211, 415
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	3 cut(s)	45, 61, 718
Csp6I	GTAC	3 cut(s)	118, 337, 543
CviAII	CATG	8 cut(s)	76, 91, 145, 397, 492, 520, 564, 792
CviQI	GTAC	3 cut(s)	118, 337, 543
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	2 cut(s)	287, 755
DpnII	GATC	2 cut(s)	285, 753
DraI	TTTAAA	1 cut(s)	549
EaeI	YGGCCR	2 cut(s)	138, 771
EagI	CGGCCG	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	22, 354, 785
EarI	CTCTTC	3 cut(s)	22, 354, 785
EciI	GGCGGA	2 cut(s)	44, 56
EclXI	CGGCCG	1 cut(s)	138
Eco105I	TACGTA	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	396, 791
Eco147I	AGGCCT	1 cut(s)	698
Eco24I	GRGCYC	1 cut(s)	828
Eco47I	GGWCC	3 cut(s)	79, 211, 415
Eco52I	CGGCCG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	471
EcoT14I	CCWWGG	2 cut(s)	396, 791
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	396, 791
FaeI	CATG	8 cut(s)	79, 94, 148, 400, 495, 523, 567, 795
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	8 cut(s)	75, 90, 144, 396, 491, 519, 563, 791
FauNDI	CATATG	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	7 cut(s)	40, 58, 61, 70, 86, 128, 141
FokI	GGATG	3 cut(s)	50, 136, 623
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	7 cut(s)	40, 58, 61, 70, 86, 128, 141
FspBI	CTAG	2 cut(s)	321, 841
GlaI	GCGC	2 cut(s)	183, 806
GluI	GCNGC	7 cut(s)	40, 58, 61, 70, 86, 128, 141
HaeIII	GGCC	3 cut(s)	140, 698, 773
HapII	CCGG	2 cut(s)	82, 115
HgaI	GACGC	3 cut(s)	45, 61, 718
HhaI	GCGC	2 cut(s)	184, 807
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	8 cut(s)	79, 94, 148, 400, 495, 523, 567, 795
Hin6I	GCGC	2 cut(s)	182, 805
HinP1I	GCGC	2 cut(s)	182, 805
HinfI	GANTC	2 cut(s)	500, 589
HpaII	CCGG	2 cut(s)	82, 115
HphI	GGTGA	3 cut(s)	208, 470, 563
Hpy166II	GTNNAC	3 cut(s)	7, 543, 748
Hpy188I	TCNGA	5 cut(s)	268, 314, 594, 813, 821
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	3 cut(s)	7, 543, 748
Hpy99I	CGWCG	2 cut(s)	193, 712
HpyAV	CCTTC	4 cut(s)	177, 195, 349, 709
HpyCH4III	ACNGT	2 cut(s)	254, 799
HpyCH4IV	ACGT	2 cut(s)	339, 744
HpyCH4V	TGCA	8 cut(s)	63, 425, 491, 495, 658, 671, 692, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 69, 190, 677, 704
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	2 cut(s)	339, 744
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	8 cut(s)	79, 94, 148, 400, 495, 523, 567, 795
HspAI	GCGC	2 cut(s)	182, 805
Kzo9I	GATC	2 cut(s)	285, 753
LguI	GCTCTTC	1 cut(s)	785
LmnI	GCTCC	1 cut(s)	802
Lsp1109I	GCAGC	3 cut(s)	47, 72, 114
LweI	GCATC	2 cut(s)	72, 114
MaeI	CTAG	2 cut(s)	321, 841
MaeII	ACGT	2 cut(s)	339, 744
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	287, 755
MboI	GATC	2 cut(s)	285, 753
MboII	GAAGA	5 cut(s)	39, 162, 371, 748, 772
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	1 cut(s)	753
MhlI	GDGCHC	2 cut(s)	279, 828
MluCI	AATT	4 cut(s)	391, 612, 666, 761
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	2 cut(s)	433, 664
MnlI	CCTC	8 cut(s)	29, 160, 208, 224, 302, 355, 359, 449
MseI	TTAA	5 cut(s)	281, 389, 530, 548, 611
MslI	CAYNNNNRTG	1 cut(s)	743
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	2 cut(s)	82, 115
MspR9I	CCNGG	1 cut(s)	473
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	473
MvnI	CGCG	3 cut(s)	42, 72, 707
MwoI	GCNNNNNNNGC	5 cut(s)	66, 69, 190, 677, 704
NcoI	CCATGG	2 cut(s)	396, 791
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	2 cut(s)	285, 753
NlaIII	CATG	8 cut(s)	79, 94, 148, 400, 495, 523, 567, 795
NlaIV	GGNNCC	2 cut(s)	212, 276
NspI	RCATGY	1 cut(s)	495
PaeI	GCATGC	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	698
PciSI	GCTCTTC	1 cut(s)	785
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	589
PkrI	GCNGC	7 cut(s)	41, 59, 62, 71, 87, 129, 142
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	211
PshBI	ATTAAT	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	212, 276
PspPI	GGNCC	3 cut(s)	79, 211, 415
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	753
RsaI	GTAC	3 cut(s)	119, 338, 544
RsaNI	GTAC	3 cut(s)	118, 337, 543
RseI	CAYNNNNRTG	1 cut(s)	743
SapI	GCTCTTC	1 cut(s)	785
SaqAI	TTAA	5 cut(s)	281, 389, 530, 548, 611
SatI	GCNGC	7 cut(s)	40, 58, 61, 70, 86, 128, 141
Sau3AI	GATC	2 cut(s)	285, 753
Sau96I	GGNCC	3 cut(s)	79, 211, 415
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	279, 828
SetI	ASST	8 cut(s)	216, 221, 326, 342, 460, 511, 747, 780
SfaNI	GCATC	2 cut(s)	72, 114
SfcI	CTRYAG	1 cut(s)	436
SinI	GGWCC	3 cut(s)	79, 211, 415
SmiMI	CAYNNNNRTG	1 cut(s)	743
SnaBI	TACGTA	1 cut(s)	340
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	4 cut(s)	391, 612, 666, 761
SseBI	AGGCCT	1 cut(s)	698
SsiI	CCGC	7 cut(s)	40, 55, 58, 67, 70, 141, 381
SspI	AATATT	2 cut(s)	481, 609
SspMI	CTAG	2 cut(s)	321, 841
StuI	AGGCCT	1 cut(s)	698
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	2 cut(s)	396, 791
TaaI	ACNGT	2 cut(s)	254, 799
TaiI	ACGT	2 cut(s)	342, 747
TaqI	TCGA	6 cut(s)	155, 200, 627, 722, 783, 834
TasI	AATT	4 cut(s)	391, 612, 666, 761
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	4 cut(s)	42, 60, 72, 143
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	5 cut(s)	281, 389, 530, 548, 611
Tru9I	TTAA	5 cut(s)	281, 389, 530, 548, 611
TscAI	CASTG	1 cut(s)	804
TseI	GCWGC	3 cut(s)	60, 85, 127
TspDTI	ATGAA	4 cut(s)	221, 508, 625, 754
TspGWI	ACGGA	2 cut(s)	407, 493
TspRI	CASTG	1 cut(s)	804
VpaK11BI	GGWCC	3 cut(s)	79, 211, 415
VspI	ATTAAT	1 cut(s)	611
XapI	RAATTY	2 cut(s)	391, 761
XceI	RCATGY	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	2 cut(s)	321, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.