Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012817

Physical Location & Seq

Genomic Coordinates Forward (+)

79579914 .. 79582575

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG566200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTCCAGTACACCCTCCGGCGAAGAGTTCACCGTCGCGTTTTGGTTCTCCGCCGTTGCATTCGACACGTCATGGATAGGATTATTACTTGCTGTTTAGGAAAGCCGGTTCACTACCGGATGCTGCCGATTTCGGTTATGACTCCTCCTTCCGGCTCTATCGCCAGCCCTGACTCCGCTGTCAAGGCCGTCCGGCGTCAGAAGTCGTCGGCTGCTACGAGTGGTCGGGAAAGCGTAGACTCCAACTTGGTCTCATTGAAGATTAGTCTGTTAGGGGATAGCCAAATCGGAAAGACGAGCTTTTTGGTAAAGTACGTGGGAGATGATGAGAAAGAAGGAGAGCCACAGACTACAGGGTTGAATTTCATGGATAAAACTCTAATCGTCAGAGATGCTCGGATTTCGTATAGTATTTGGGAAGTTGGAGGTGATAAGAAATCCCAGGACAATATGCAGGTTGCTTGCATGGATTCCGTAGCAATTTTGTTCATGTTCGACTTGACAAGTCGTTGTACGTTAAATAGTATTCCAACATGGTATCACCGAGCCAGAAAATGGAATCAGACGGCAATCCCAATATTGATAGGAACAAAGTTCGATGACTTCATCCAGCTGCCATTAGATTTGCAATGGGCAATTGCGAGTCAGGTAAGAAATAACAATGACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

223

Amino Acids

25.23

Weight (kDa)

9.61

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	87 - 200	1.6e-18	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	87 - 200	2.2e-16	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21700 AT3G21700 AT3G21700
fragaria_vesca	FvH4_6g43310
malus_domestica	MD09G1069800.v1.1 MD17G1096000.v1.1
pyrus_communis	pycom09g02990
rosa_chinensis	RchiOBHm_Chr2g0159641
rosa_laevigata	RLG00000021170
rosa_multiflora	Rmu_sc0004966.1_g000011 Rmu_sc0011502.1_g000008
rosa_roxburghii	Rroxscaffold_2G00090360
rosa_rugosa	Rorug02G0477500
rosa_samantha	Rh2AG544300 Rh2BG557100 Rh2CG527400 Rh2DG566200
rosa_wichuraiana	Rw2G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	39
AciI	CCGC	2 cut(s)	52, 177
AcsI	RAATTY	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	3 cut(s)	11, 314, 514
AfiI	CCNNNNNNNGG	2 cut(s)	152, 555
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	259, 361
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	441
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	2 cut(s)	300, 613
AluI	AGCT	2 cut(s)	300, 613
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	124, 212, 613
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	23, 440, 533
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	111, 199, 600
BceAI	ACGGC	3 cut(s)	39, 173, 582
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	3 cut(s)	125, 213, 614
BlsI	GCNGC	3 cut(s)	126, 214, 615
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	111, 382
BsaAI	YACGTR	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 555
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	126, 606
BseLI	CCNNNNNNNGG	2 cut(s)	152, 555
BseMI	GCAATG	1 cut(s)	635
BseNI	ACTGG	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	111, 199, 600
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	5 cut(s)	19, 107, 118, 153, 193
BslI	CCNNNNNNNGG	2 cut(s)	152, 555
BsmAI	GTCTC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	52, 177
BspANI	GGCC	1 cut(s)	188
BspFNI	CGCG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	441
BssNI	GRCGYC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	166, 463
BstF5I	GGATG	2 cut(s)	126, 606
BstFNI	CGCG	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	111, 199, 600
BsuRI	GGCC	1 cut(s)	188
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	126, 606
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	166, 463
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	10, 313, 513
CviAII	CATG	5 cut(s)	73, 367, 466, 490, 534
CviQI	GTAC	3 cut(s)	10, 313, 513
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	441
FaeI	CATG	5 cut(s)	76, 370, 469, 493, 537
FaiI	YATR	8 cut(s)	74, 140, 368, 408, 452, 467, 491, 535
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	5 cut(s)	72, 366, 465, 489, 533
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	125, 213, 614
FokI	GGATG	2 cut(s)	133, 593
Fsp4HI	GCNGC	3 cut(s)	125, 213, 614
GluI	GCNGC	3 cut(s)	125, 213, 614
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	5 cut(s)	19, 107, 118, 153, 193
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	5 cut(s)	76, 370, 469, 493, 537
HinfI	GANTC	6 cut(s)	142, 173, 239, 470, 559, 643
HpaII	CCGG	5 cut(s)	19, 107, 118, 153, 193
HphI	GGTGA	3 cut(s)	23, 440, 533
Hpy166II	GTNNAC	4 cut(s)	12, 31, 112, 238
Hpy188I	TCNGA	5 cut(s)	201, 290, 389, 399, 564
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	4 cut(s)	12, 31, 112, 238
Hpy99I	CGWCG	2 cut(s)	39, 211
HpyAV	CCTTC	2 cut(s)	159, 329
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	3 cut(s)	69, 315, 515
HpyCH4V	TGCA	4 cut(s)	60, 454, 465, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpySE526I	ACGT	3 cut(s)	69, 315, 515
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	76, 370, 469, 493, 537
Lsp1109I	GCAGC	3 cut(s)	111, 199, 600
LweI	GCATC	2 cut(s)	111, 382
MaeII	ACGT	3 cut(s)	69, 315, 515
MboII	GAAGA	2 cut(s)	36, 271
MfeI	CAATTG	1 cut(s)	636
MluCI	AATT	3 cut(s)	361, 480, 636
MlyI	GAGTC	4 cut(s)	136, 167, 233, 652
MmeI	TCCRAC	3 cut(s)	267, 403, 554
MnlI	CCTC	3 cut(s)	26, 156, 419
MseI	TTAA	2 cut(s)	518, 670
MspA1I	CMGCKG	2 cut(s)	179, 613
MspI	CCGG	5 cut(s)	19, 107, 118, 153, 193
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	185
NlaIII	CATG	5 cut(s)	76, 370, 469, 493, 537
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	470, 559
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	3 cut(s)	126, 214, 615
PleI	GAGTC	4 cut(s)	136, 167, 233, 651
PpsI	GAGTC	4 cut(s)	136, 167, 233, 651
Ppu21I	YACGTR	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	3 cut(s)	11, 314, 514
RsaNI	GTAC	3 cut(s)	10, 313, 513
SaqAI	TTAA	2 cut(s)	518, 670
SatI	GCNGC	3 cut(s)	125, 213, 614
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	4 cut(s)	136, 167, 233, 652
ScrFI	CCNGG	1 cut(s)	443
SetI	ASST	8 cut(s)	72, 302, 318, 430, 459, 518, 615, 651
SfaNI	GCATC	2 cut(s)	111, 382
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	3 cut(s)	361, 480, 636
SsiI	CCGC	2 cut(s)	52, 177
SspI	AATATT	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	3 cut(s)	72, 318, 518
TaqI	TCGA	3 cut(s)	64, 495, 597
TasI	AATT	3 cut(s)	361, 480, 636
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	470, 559
Tru1I	TTAA	2 cut(s)	518, 670
Tru9I	TTAA	2 cut(s)	518, 670
TseI	GCWGC	3 cut(s)	124, 212, 613
TspDTI	ATGAA	3 cut(s)	355, 478, 595
TspGWI	ACGGA	1 cut(s)	463
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.