Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012817

Physical Location & Seq

Genomic Coordinates Forward (+)

33550283 .. 33553204

Gene Structure 2922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATCCAGTACACCCTCCGGCGAAGAGTTCACCGTCGAGTTTTGGTTCTCCGGCGTTGCATTAAACACGTCATGGATAGGATTATTACGTGCTGTTTAGGAAAGCCGGTTCACTACCGCATGCTGCCGATCTCGGTTATGACTCCTCCTTCCAGCTCTATCGCTAGCAGCCCCGTCGACACACCTGTCCCGGCCGTCCGGCGTCAGAAGTCGTTGACGGTTAGCAGTGGTCGGGAAAGCGTAGACTCCAACCTCGTCTCCTTAAAGATTAGTCTGTTGGGGGATAGCCAAATCGGAAAAACAAGCTTTTTGGTAAAGTACGTAGGAGATGATGATGAGAAAGCAGAAGGAGAGCCACAGACCACAGGGTTAAATTTCATGGATAAAACTCTCAGGGTCAGAGACGCTCGGATTTCGTATAGTATTTGGGAAGTTGGAGATGATAGGAAATCCCAGGACAATTTGCACGTTGCTTGCAAGGATTCCGTAGCAATTTTGTTCATGTTCGACTTGACAAGTCGGGTTACGTTGAATAGTATTCCAACATGGTATAACCGAGCCAGGAAATGGAATCAGACGGCAATCCCAATATTGATAGGAACAAAATTCGATGACTTCATCCAGCTCCCATTAGATTTGCAATGGGCAATCGCAAGTCAGGCAAGAGCTTATGCAAAAGCACTCAACGCAACACTTTTCTTTTCGAGTGCAACCTACAACATAAATGTGAACAAGATCTTCAAATTCATCACAGCCAAGCTCTTTGACTTGCCGTGGACTGTCGAGCGAAATCTGACCATTGGAGAGCCGATTATTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

275

Amino Acids

31.11

Weight (kDa)

9.61

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	89 - 254	1.5e-18	Ras family
Roc	PF08477	89 - 204	2e-15	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21700 AT3G21700 AT3G21700
fragaria_vesca	FvH4_6g43310
malus_domestica	MD09G1069800.v1.1 MD17G1096000.v1.1
pyrus_communis	pycom09g02990
rosa_chinensis	RchiOBHm_Chr2g0159641
rosa_laevigata	RLG00000021170
rosa_multiflora	Rmu_sc0004966.1_g000011 Rmu_sc0011502.1_g000008
rosa_roxburghii	Rroxscaffold_2G00090360
rosa_rugosa	Rorug02G0477500
rosa_samantha	Rh2AG544300 Rh2BG557100 Rh2CG527400 Rh2DG566200
rosa_wichuraiana	Rw2G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccI	GTMKAC	2 cut(s)	177, 243
AciI	CCGC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	3 cut(s)	373, 605, 743
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	2 cut(s)	11, 320
AfiI	CCNNNNNNNGG	1 cut(s)	567
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	532, 742
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	453, 560
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	5 cut(s)	156, 306, 625, 668, 760
AluI	AGCT	5 cut(s)	156, 306, 625, 668, 760
Alw26I	GTCTC	2 cut(s)	262, 396
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	124, 168
ApoI	RAATTY	3 cut(s)	373, 605, 743
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	111, 180
BceAI	ACGGC	3 cut(s)	179, 594, 757
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	2 cut(s)	455, 562
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	262, 396
BfaI	CTAG	2 cut(s)	165, 823
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	2 cut(s)	125, 169
BlsI	GCNGC	2 cut(s)	126, 170
Bme1390I	CCNGG	3 cut(s)	191, 455, 562
BmgBI	CACGTC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	191, 455, 562
BmtI	GCTAGC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	191
BsaAI	YACGTR	2 cut(s)	90, 322
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	453, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	455, 562
BseDI	CCNNGG	2 cut(s)	453, 773
BseGI	GGATG	1 cut(s)	618
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	135
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	111, 180
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	195
BsiSI	CCGG	5 cut(s)	19, 52, 107, 191, 199
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmAI	GTCTC	2 cut(s)	262, 396
BsmBI	CGTCTC	2 cut(s)	262, 396
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	3, 129, 735
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	405
BspOI	GCTAGC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	453, 773
BssMI	GATC	3 cut(s)	3, 129, 735
BssNI	GRCGYC	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	455, 562
Bst4CI	ACNGT	3 cut(s)	35, 220, 781
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	202
BstBAI	YACGTR	2 cut(s)	90, 322
BstC8I	GCNNGC	3 cut(s)	122, 166, 475
BstDEI	CTNAG	1 cut(s)	392
BstDSI	CCRYGG	1 cut(s)	773
BstF5I	GGATG	1 cut(s)	618
BstKTI	GATC	3 cut(s)	6, 132, 738
BstMAI	GTCTC	2 cut(s)	262, 396
BstMBI	GATC	3 cut(s)	3, 129, 735
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 686
BstNI	CCWGG	2 cut(s)	455, 562
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	189, 453, 560
BstSNI	TACGTA	1 cut(s)	322
BstV1I	GCAGC	2 cut(s)	111, 180
BstX2I	RGATCY	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	735
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	773
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	618
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	122, 166, 475
Cfr10I	RCCGGY	1 cut(s)	106
CseI	GACGC	2 cut(s)	191, 413
Csp6I	GTAC	2 cut(s)	10, 319
CviAII	CATG	5 cut(s)	73, 121, 379, 502, 546
CviQI	GTAC	2 cut(s)	10, 319
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	3 cut(s)	5, 131, 737
DpnII	GATC	3 cut(s)	3, 129, 735
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	192
Eco105I	TACGTA	1 cut(s)	322
Eco52I	CGGCCG	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	453, 560
Esp3I	CGTCTC	2 cut(s)	262, 396
FaeI	CATG	5 cut(s)	76, 124, 382, 505, 549
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	5 cut(s)	72, 120, 378, 501, 545
FblI	GTMKAC	2 cut(s)	177, 243
Fnu4HI	GCNGC	2 cut(s)	125, 169
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	2 cut(s)	125, 169
FspBI	CTAG	2 cut(s)	165, 823
GluI	GCNGC	2 cut(s)	125, 169
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	5 cut(s)	19, 52, 107, 191, 199
HgaI	GACGC	2 cut(s)	191, 413
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	76, 124, 382, 505, 549
HincII	GTYRAC	2 cut(s)	178, 216
HindII	GTYRAC	2 cut(s)	178, 216
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	4 cut(s)	142, 245, 482, 571
HpaII	CCGG	5 cut(s)	19, 52, 107, 191, 199
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	8 cut(s)	12, 31, 112, 178, 216, 244, 730, 777
Hpy188I	TCNGA	6 cut(s)	207, 296, 401, 411, 576, 795
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	8 cut(s)	12, 31, 112, 178, 216, 244, 730, 777
Hpy99I	CGWCG	2 cut(s)	39, 179
HpyAV	CCTTC	2 cut(s)	159, 341
HpyCH4III	ACNGT	3 cut(s)	35, 220, 781
HpyCH4IV	ACGT	5 cut(s)	69, 89, 321, 468, 527
HpyCH4V	TGCA	6 cut(s)	60, 466, 477, 640, 674, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 686
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	5 cut(s)	69, 89, 321, 468, 527
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	5 cut(s)	76, 124, 382, 505, 549
Kzo9I	GATC	3 cut(s)	3, 129, 735
LmnI	GCTCC	1 cut(s)	630
Lsp1109I	GCAGC	2 cut(s)	111, 180
MaeI	CTAG	2 cut(s)	165, 823
MaeII	ACGT	5 cut(s)	69, 89, 321, 468, 527
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	3 cut(s)	5, 131, 737
MboI	GATC	3 cut(s)	3, 129, 735
MboII	GAAGA	2 cut(s)	36, 730
MflI	RGATCY	1 cut(s)	735
MluCI	AATT	5 cut(s)	373, 460, 492, 605, 743
MlyI	GAGTC	2 cut(s)	136, 239
MmeI	TCCRAC	3 cut(s)	273, 415, 566
MnlI	CCTC	3 cut(s)	26, 156, 263
MseI	TTAA	3 cut(s)	63, 263, 371
MslI	CAYNNNNRTG	1 cut(s)	725
MspI	CCGG	5 cut(s)	19, 52, 107, 191, 199
MspR9I	CCNGG	3 cut(s)	191, 455, 562
MvaI	CCWGG	2 cut(s)	455, 562
MwoI	GCNNNNNNNGC	2 cut(s)	659, 686
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	3 cut(s)	3, 129, 735
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	5 cut(s)	76, 124, 382, 505, 549
NspI	RCATGY	1 cut(s)	124
PaeI	GCATGC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	482, 571
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	2 cut(s)	126, 170
PleI	GAGTC	2 cut(s)	136, 239
PpsI	GAGTC	2 cut(s)	136, 239
Ppu21I	YACGTR	2 cut(s)	90, 322
Psp6I	CCWGG	2 cut(s)	453, 560
PspGI	CCWGG	2 cut(s)	453, 560
PsuI	RGATCY	1 cut(s)	735
RsaI	GTAC	2 cut(s)	11, 320
RsaNI	GTAC	2 cut(s)	10, 319
RseI	CAYNNNNRTG	1 cut(s)	725
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	63, 263, 371
SatI	GCNGC	2 cut(s)	125, 169
Sau3AI	GATC	3 cut(s)	3, 129, 735
SchI	GAGTC	2 cut(s)	136, 239
ScrFI	CCNGG	3 cut(s)	191, 455, 562
SmiMI	CAYNNNNRTG	1 cut(s)	725
SnaBI	TACGTA	1 cut(s)	322
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	5 cut(s)	373, 460, 492, 605, 743
SsiI	CCGC	1 cut(s)	118
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	2 cut(s)	165, 823
StyD4I	CCNGG	3 cut(s)	189, 453, 560
TaaI	ACNGT	3 cut(s)	35, 220, 781
TaiI	ACGT	5 cut(s)	72, 92, 324, 471, 530
TaqI	TCGA	6 cut(s)	37, 177, 507, 609, 704, 783
TasI	AATT	5 cut(s)	373, 460, 492, 605, 743
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	482, 571
Tru1I	TTAA	3 cut(s)	63, 263, 371
Tru9I	TTAA	3 cut(s)	63, 263, 371
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	2 cut(s)	124, 168
TspDTI	ATGAA	4 cut(s)	367, 490, 607, 736
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	567
XapI	RAATTY	3 cut(s)	373, 605, 743
XceI	RCATGY	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	177, 243
XspI	CTAG	2 cut(s)	165, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.