AT3G22800

Leucine rich repeat N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013807
Physical Location & Seq
Reverse (-)
8062712 .. 8064649
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22800.1

Sequence Viewer

Length: 1413 bp
ATGAGAGAAGACACCTTCTTCTTCCAGTGGTGGTTCTTGGTCTCTGGTCTCAGCTTCATCTTCCTTCTTCCTCAAGCTTTCACCTACCATACTCCTCCAATAAACCCGTGCTTCGCTCATCCTTTTCTTCCTCCTATCACAAACCCGAGGCTCTTAAAAGCTTTCACAGCTCTTCAAGCTTGGAAGTTCACCATAACCTCTGACCCAAACGGCTTCACTTCTAACTGGTGCGGTCCTAATGTTTGTAACTACACAGGCGTGTTTTGTGCACCGGCTCTAGATAACCCTTATGTCTTAACCGTCGCTGGTATAGACTTGAACCATGCTAATATCGCCGGTTATCTCCCTTTAGAGCTTGGTCTCTTAACCGATCTTGCCTTGTTCCATATCAATTCCAACCGTTTTCAAGGTCAACTTCCCAAAACTCTAAAATGTCTCCATCTTCTCCATGAGCTTGACGTCAGCAACAATAAACTCTCCGGCGAGTTTCCTTCCGTAATCTTCTCTTTGCCTTCCTTGAAGTTTCTCGACATTAGGTTCAATGAGTTCCAAGGTGATGTTCCTAGCCAACTCTTTGACCTAAACCTCGACGCTCTCTTCATTAACGACAACAAATTCCAGTTTAGGTTACCGAGAAACATCGGAAACTCTCCGGTTTCTGTTCTTGTCTTGGCCAACAACGATCTCCAAGGATCTTGTGTACCTCCAAGTTTCTACAAAATGGGGAAAACATTACACGAAATCATTATCACGAACTCACAACTAACCGGTTGTTTAAACCGGGAAATCGGTTTGCTTAACCAGTTGACGGTTTTCGACGTGAGTTACAACAACTTGGTGGGTTCGTTGCCGGAGACTATAGGTGATATGAAGAGTTTAGAGCAGTTAAACATTGCGCATAACAAATTCTCCGGCTACATTCCGGAGAGTATCTGCCGATTACCAAGGCTCGAGAACTTCACTTACTCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGTTTGAGGCTTCAAGAGTTTGATGATCGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGGTCTCTCGCTGAATGCAAATCCTTTTCTTCTTATCCTATTGATTGTGCATCCTTTGGCTGCTCTCCACCTAGTCCACCGCCTCCTCCTCCTCCTCCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCACCGCCACCATATGTGTATCCTTCGCCGCCGCCACCACCTCCATCACCTCCACCATACGTGTATCCACCGCCACCGCCACCATATGTGTATCCTCCACCGCCATCACCACCATATGTGTATCCTCCGCCACCACCGTCACCGCAACCATATATGTATCCTTCACCTCCTTGTAACGATCTTCCAACGCCGGTGCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

470

Amino Acids

52.33

Weight (kDa)

5.84

Isoelectric Point (pI)

72.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 268 - 322 1.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22800
fragaria_vesca FvH4_4g00870
malus_domestica MD16G1198100.v1.1
prunus_persica Prupe.1G019600_v2.0.a1
pyrus_communis pycom16g16700
rosa_chinensis RchiOBHm_Chr4g0387491
rosa_laevigata RLG00000010118
rosa_multiflora Rmu_co8216490.1_g000001 Rmu_sc0009161.1_g000003 Rmu_sc0011414.1_g000003
rosa_roxburghii Rroxscaffold_5G00334170
rosa_rugosa Rorug03G0309900
rosa_samantha Rh4AG016200 Rh4BG010900 Rh4CG017400 Rh4DG012100
rosa_wichuraiana Rw4G001030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
Acc16I TGCGCA 1 cut(s) 897
AccIII TCCGGA 1 cut(s) 922
AclWI GGATC 1 cut(s) 700
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 2 cut(s) 614, 905
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 702
AfiI CCNNNNNNNGG 1 cut(s) 808
AflIII ACRYGT 1 cut(s) 1269
AgeI ACCGGT 1 cut(s) 767
AgsI TTSAA 7 cut(s) 176, 319, 407, 520, 541, 1013, 1047
AjiI CACGTC 1 cut(s) 820
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 7 cut(s) 54, 77, 161, 170, 179, 355, 454
AluI AGCT 7 cut(s) 54, 77, 161, 170, 179, 355, 454
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 6 cut(s) 46, 53, 365, 440, 848, 1068
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 1 cut(s) 700
Ama87I CYCGRG 2 cut(s) 145, 950
Aor13HI TCCGGA 1 cut(s) 922
AoxI GGCC 2 cut(s) 672, 1049
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 1119
ApoI RAATTY 2 cut(s) 614, 905
AsiGI ACCGGT 1 cut(s) 767
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 782
AsuHPI GGTGA 9 cut(s) 73, 181, 566, 875, 998, 1248, 1308, 1341, 1365
AvaI CYCGRG 2 cut(s) 145, 950
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 962, 994
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 1106
BccI CCATC 3 cut(s) 447, 1261, 1321
BceAI ACGGC 1 cut(s) 226
BciVI GTATCC 5 cut(s) 1239, 1284, 1311, 1341, 1377
BcnI CCSGG 1 cut(s) 782
BcoDI GTCTC 6 cut(s) 46, 53, 365, 440, 848, 1068
BfaI CTAG 3 cut(s) 278, 564, 1131
BfmI CTRYAG 1 cut(s) 858
BfuI GTATCC 5 cut(s) 1239, 1284, 1311, 1341, 1377
BisI GCNGC 3 cut(s) 1120, 1238, 1241
BlsI GCNGC 3 cut(s) 1121, 1239, 1242
Bme1390I CCNGG 1 cut(s) 782
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 2 cut(s) 145, 950
BmgBI CACGTC 1 cut(s) 820
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 782
BmsI GCATC 1 cut(s) 1118
BpiI GAAGAC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 782
BsaAI YACGTR 1 cut(s) 1270
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 4 cut(s) 46, 53, 365, 1068
BsaJI CCNNGG 4 cut(s) 146, 550, 688, 944
BsaWI WCCGGW 4 cut(s) 652, 767, 922, 983
BsaXI ACNNNNNCTCC 4 cut(s) 893, 923, 965, 995
Bsc4I CCNNNNNNNGG 1 cut(s) 808
Bse118I RCCGGY 5 cut(s) 271, 335, 767, 994, 1399
Bse1I ACTGG 4 cut(s) 25, 230, 619, 802
Bse3DI GCAATG 1 cut(s) 891
BseAI TCCGGA 1 cut(s) 922
BseDI CCNNGG 4 cut(s) 146, 550, 688, 944
BseGI GGATG 2 cut(s) 118, 1109
BseLI CCNNNNNNNGG 1 cut(s) 808
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 1 cut(s) 64
BseNI ACTGG 4 cut(s) 25, 230, 619, 802
BseRI GAGGAG 6 cut(s) 84, 1134, 1137, 1140, 1143, 1146
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 1 cut(s) 1106
BshFI GGCC 2 cut(s) 674, 1051
BshTI ACCGGT 1 cut(s) 767
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 2 cut(s) 145, 950
BslI CCNNNNNNNGG 1 cut(s) 808
BsmAI GTCTC 6 cut(s) 46, 53, 365, 440, 848, 1068
BsmI GAATGC 1 cut(s) 1079
BsnI GGCC 2 cut(s) 674, 1051
Bso31I GGTCTC 4 cut(s) 46, 53, 365, 1068
BsoBI CYCGRG 2 cut(s) 145, 950
Bsp1286I GDGCHC 1 cut(s) 271
Bsp13I TCCGGA 1 cut(s) 922
Bsp143I GATC 5 cut(s) 370, 682, 692, 1024, 1387
BspANI GGCC 2 cut(s) 674, 1051
BspCNI CTCAG 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 922
BspPI GGATC 1 cut(s) 700
BspQI GCTCTTC 1 cut(s) 177
BspTNI GGTCTC 4 cut(s) 46, 53, 365, 1068
BsrDI GCAATG 1 cut(s) 891
BsrFI RCCGGY 5 cut(s) 271, 335, 767, 994, 1399
BsrI ACTGG 4 cut(s) 25, 230, 619, 802
BssAI RCCGGY 5 cut(s) 271, 335, 767, 994, 1399
BssECI CCNNGG 4 cut(s) 146, 550, 688, 944
BssMI GATC 5 cut(s) 370, 682, 692, 1024, 1387
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 3 cut(s) 550, 688, 944
Bst4CI ACNGT 5 cut(s) 301, 401, 811, 1062, 1347
Bst6I CTCTTC 3 cut(s) 177, 602, 866
BstACI GRCGYC 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 1270
BstDEI CTNAG 1 cut(s) 50
BstEII GGTNACC 1 cut(s) 627
BstF5I GGATG 2 cut(s) 118, 1109
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 5 cut(s) 373, 685, 695, 1027, 1390
BstMAI GTCTC 6 cut(s) 46, 53, 365, 440, 848, 1068
BstMBI GATC 5 cut(s) 370, 682, 692, 1024, 1387
BstMWI GCNNNNNNNGC 3 cut(s) 167, 176, 332
BstPI GGTNACC 1 cut(s) 627
BstSCI CCNGG 1 cut(s) 780
BstSFI CTRYAG 1 cut(s) 858
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 1106
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
BsuI GTATCC 5 cut(s) 1239, 1284, 1311, 1341, 1377
BsuRI GGCC 2 cut(s) 674, 1051
BtrI CACGTC 1 cut(s) 820
BtsCI GGATG 2 cut(s) 118, 1109
BtsIMutI CAGTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 898
Cfr10I RCCGGY 5 cut(s) 271, 335, 767, 994, 1399
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 599
Csp6I GTAC 1 cut(s) 701
CspAI ACCGGT 1 cut(s) 767
CviAII CATG 2 cut(s) 323, 449
CviQI GTAC 1 cut(s) 701
DdeI CTNAG 1 cut(s) 50
DpnI GATC 5 cut(s) 372, 684, 694, 1026, 1389
DpnII GATC 5 cut(s) 370, 682, 692, 1024, 1387
DraI TTTAAA 1 cut(s) 777
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 3 cut(s) 177, 602, 866
EarI CTCTTC 3 cut(s) 177, 602, 866
EciI GGCGGA 1 cut(s) 1326
Eco130I CCWWGG 3 cut(s) 550, 688, 944
Eco31I GGTCTC 4 cut(s) 46, 53, 365, 1068
Eco47I GGWCC 1 cut(s) 233
Eco88I CYCGRG 2 cut(s) 145, 950
Eco91I GGTNACC 1 cut(s) 627
EcoO65I GGTNACC 1 cut(s) 627
EcoT14I CCWWGG 3 cut(s) 550, 688, 944
ErhI CCWWGG 3 cut(s) 550, 688, 944
FaeI CATG 2 cut(s) 326, 452
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 2 cut(s) 322, 448
FauNDI CATATG 3 cut(s) 1222, 1294, 1324
Fnu4HI GCNGC 3 cut(s) 1120, 1238, 1241
FokI GGATG 2 cut(s) 105, 1096
Fsp4HI GCNGC 3 cut(s) 1120, 1238, 1241
FspBI CTAG 3 cut(s) 278, 564, 1131
FspI TGCGCA 1 cut(s) 897
GlaI GCGC 1 cut(s) 897
GluI GCNGC 3 cut(s) 1120, 1238, 1241
HaeIII GGCC 2 cut(s) 674, 1051
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 898
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 2 cut(s) 326, 452
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 2 cut(s) 413, 807
HindII GTYRAC 2 cut(s) 413, 807
HindIII AAGCTT 3 cut(s) 75, 159, 177
HphI GGTGA 9 cut(s) 73, 181, 566, 875, 998, 1248, 1308, 1341, 1365
Hpy166II GTNNAC 7 cut(s) 189, 269, 413, 701, 807, 1040, 1136
Hpy188I TCNGA 2 cut(s) 202, 644
Hpy188III TCNNGA 6 cut(s) 278, 527, 751, 923, 952, 1013
Hpy8I GTNNAC 7 cut(s) 189, 269, 413, 701, 807, 1040, 1136
Hpy99I CGWCG 3 cut(s) 305, 593, 821
HpyAV CCTTC 7 cut(s) 25, 74, 501, 522, 1053, 1242, 1380
HpyCH4III ACNGT 5 cut(s) 301, 401, 811, 1062, 1347
HpyCH4IV ACGT 3 cut(s) 459, 819, 1269
HpyCH4V TGCA 5 cut(s) 269, 1057, 1077, 1109, 1405
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 176, 332
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 3 cut(s) 459, 819, 1269
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 2 cut(s) 326, 452
HspAI GCGC 1 cut(s) 896
Kpn2I TCCGGA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 370, 682, 692, 1024, 1387
LguI GCTCTTC 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 1106
LweI GCATC 1 cut(s) 1118
MaeI CTAG 3 cut(s) 278, 564, 1131
MaeII ACGT 3 cut(s) 459, 819, 1269
MaeIII GTNAC 5 cut(s) 245, 627, 824, 1347, 1382
MalI GATC 5 cut(s) 372, 684, 694, 1026, 1389
MboI GATC 5 cut(s) 370, 682, 692, 1024, 1387
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 4 cut(s) 391, 614, 905, 1033
MluNI TGGCCA 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 420
Mox20I TGGCCA 1 cut(s) 674
MroI TCCGGA 1 cut(s) 922
MscI TGGCCA 1 cut(s) 674
MseI TTAA 7 cut(s) 155, 296, 365, 603, 776, 798, 887
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 674
MspR9I CCNGG 1 cut(s) 782
MssI GTTTAAAC 1 cut(s) 777
Mva1269I GAATGC 1 cut(s) 1079
MwoI GCNNNNNNNGC 3 cut(s) 167, 176, 332
NciI CCSGG 1 cut(s) 782
NdeI CATATG 3 cut(s) 1222, 1294, 1324
NdeII GATC 5 cut(s) 370, 682, 692, 1024, 1387
NlaIII CATG 2 cut(s) 326, 452
NmuCI GTSAC 1 cut(s) 1347
NsbI TGCGCA 1 cut(s) 897
OliI CACNNNNGTG 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 950
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 1 cut(s) 1079
PinAI ACCGGT 1 cut(s) 767
PkrI GCNGC 3 cut(s) 1121, 1239, 1242
PmeI GTTTAAAC 1 cut(s) 777
Ppu21I YACGTR 1 cut(s) 1270
PspEI GGTNACC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 233
PsrI GAACNNNNNNTAC 2 cut(s) 947, 979
PsuI RGATCY 1 cut(s) 692
RsaI GTAC 1 cut(s) 702
RsaNI GTAC 1 cut(s) 701
RseI CAYNNNNRTG 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 7 cut(s) 155, 296, 365, 603, 776, 798, 887
SatI GCNGC 3 cut(s) 1120, 1238, 1241
Sau3AI GATC 5 cut(s) 370, 682, 692, 1024, 1387
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 782
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 1 cut(s) 1118
SfcI CTRYAG 1 cut(s) 858
Sfr274I CTCGAG 1 cut(s) 950
SgrAI CRCCGGYG 1 cut(s) 1399
SinI GGWCC 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 950
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 72, 950
SmoI CTYRAG 2 cut(s) 72, 950
Sse9I AATT 4 cut(s) 391, 614, 905, 1033
SspMI CTAG 3 cut(s) 278, 564, 1131
StyD4I CCNGG 1 cut(s) 780
StyI CCWWGG 3 cut(s) 550, 688, 944
TaaI ACNGT 5 cut(s) 301, 401, 811, 1062, 1347
TaiI ACGT 3 cut(s) 462, 822, 1272
TaqI TCGA 4 cut(s) 528, 588, 816, 951
TasI AATT 4 cut(s) 391, 614, 905, 1033
TauI GCSGC 2 cut(s) 1240, 1243
Tru1I TTAA 7 cut(s) 155, 296, 365, 603, 776, 798, 887
Tru9I TTAA 7 cut(s) 155, 296, 365, 603, 776, 798, 887
TscAI CASTG 1 cut(s) 32
TseFI GTSAC 1 cut(s) 1347
TseI GCWGC 1 cut(s) 1119
Tsp45I GTSAC 1 cut(s) 1347
TspDTI ATGAA 3 cut(s) 46, 589, 884
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 2 cut(s) 614, 905
XbaI TCTAGA 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 950
XspI CTAG 3 cut(s) 278, 564, 1131
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.