Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013807

Physical Location & Seq

Genomic Coordinates Forward (+)

63205004 .. 63206086

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAATCCCCAAATCTCACTCTATCCGTTTTGATCATTCTCTCTATCACCTTCATCTCCAAACCCTCGCACCAAGTTTCTCATTCCCCTCAAACCTTTCCCGTTAATGCTAGACTTCAAAAGGCTTACCAAGCTCTCCAAGCATGGAAACATGCCATCACCTCAGACCCGAATAACTTCACCGCCAACTGGTGCGGCCCAAACGTATGCAGCTACACCGGAGTCTACTGTGCACAGGCCCTTGATGACCCTCACATCACTACCGTGGCTGGAGTAGACCTAAACCACGCCAACATAGCTGGTTCATTGCCTGAAGAACTCGGCCTCTTAGTCGACATAGCTGTCGTGCACATAAACTCAAACAAGTTCTGTGGGACCATTCCTTCCAGCTTTCGTGGTCTTTATCTTCTTTATGAGCTTGATATTAGTAATAACCAATTCTCAGGTCCATTTCCTTCATCTGTTCTTTGCCTTCCTTCACTCAAGTACTTAGATATTAGATACAACAACTTTGAAGGTCGAATTCCTCCTGCCCTTTTCGATTTAAAACTCGATGCCTTGTTCCTTAACAATAACAAGTTCCAATGTTCATTGCCTCAAAACATCGGCAACTCCTCAGTCTCCGTGTTCGTGTTAGCAAACAACGACTTCAAAGGTGCATTTCCTTCAAGTCTGGCCAAAATGAAGGATACATTAAACGAAGTTATACTCACGAATAGTGGACTAGAAGGGTGTTTGCCTTCGAATATTGGGTGCTTGGACAAATTGACAGTGTTTGATGTAAGCAACAATAAGTTGGACGGTTCATTGCCGGAGTCAATGGGTGGGATGAAGAGCTTGGAGCAACTGAATGTGGCATATAACGGATTTTCTGGGCAGATTCCGGCAAGTGTTTGCTCTTTGCCTAAGTTGGAGAGCTTTAACTCTTCAAATAACTACTTCTGTGGTCAACCAGAGATGTGTGTGAGGTTGAAAGAAACAGATGATAGGAGGAATTGCATACCATATAGGCCATTCCAGAGATCAGCAAAAGAATGTGCCGCATTTCATTCCCATAATAATTTGGCCAACTGTGGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005199

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

361

Amino Acids

39.33

Weight (kDa)

6.44

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	43 - 77	3.1e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	115 - 171	2.7e-07	Leucine rich repeat
LRR_8	PF13855	231 - 289	2.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22800
fragaria_vesca	FvH4_4g00870
malus_domestica	MD16G1198100.v1.1
prunus_persica	Prupe.1G019600_v2.0.a1
pyrus_communis	pycom16g16700
rosa_chinensis	RchiOBHm_Chr4g0387491
rosa_laevigata	RLG00000010118
rosa_multiflora	Rmu_co8216490.1_g000001 Rmu_sc0009161.1_g000003 Rmu_sc0011414.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334170
rosa_rugosa	Rorug03G0309900
rosa_samantha	Rh4AG016200 Rh4BG010900 Rh4CG017400 Rh4DG012100
rosa_wichuraiana	Rw4G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccI	GTMKAC	3 cut(s)	225, 276, 333
AciI	CCGC	3 cut(s)	183, 195, 1041
AcoI	YGGCCR	2 cut(s)	675, 1065
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	6 cut(s)	119, 515, 652, 669, 930, 973
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	8 cut(s)	134, 213, 299, 341, 390, 418, 837, 918
AluI	AGCT	8 cut(s)	134, 213, 299, 341, 390, 418, 837, 918
Alw21I	GWGCWC	2 cut(s)	235, 351
Alw26I	GTCTC	1 cut(s)	625
Alw44I	GTGCAC	2 cut(s)	231, 347
AoxI	GGCC	6 cut(s)	196, 237, 322, 675, 1010, 1065
ApaLI	GTGCAC	2 cut(s)	231, 347
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	4 cut(s)	197, 238, 375, 446
AsuHPI	GGTGA	3 cut(s)	40, 151, 172
AsuII	TTCGAA	1 cut(s)	743
AvaII	GGWCC	2 cut(s)	375, 446
BaeGI	GKGCMC	2 cut(s)	235, 351
BalI	TGGCCA	2 cut(s)	677, 1067
Bbv12I	GWGCWC	2 cut(s)	235, 351
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	164
BciVI	GTATCC	1 cut(s)	682
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	2 cut(s)	111, 725
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	3 cut(s)	196, 211, 1041
BlsI	GCNGC	3 cut(s)	197, 212, 1042
BmcAI	AGTACT	1 cut(s)	488
Bme18I	GGWCC	2 cut(s)	375, 446
BmgT120I	GGNCC	4 cut(s)	197, 238, 375, 446
BmiI	GGNNCC	1 cut(s)	376
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	3 cut(s)	305, 590, 806
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	834
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	3 cut(s)	305, 590, 806
BseMII	CTCAG	3 cut(s)	177, 456, 630
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	604
BseSI	GKGCMC	2 cut(s)	235, 351
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	6 cut(s)	198, 239, 324, 677, 1012, 1067
BsiHKAI	GWGCWC	2 cut(s)	235, 351
BsiSI	CCGG	3 cut(s)	219, 812, 884
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	6 cut(s)	198, 239, 324, 677, 1012, 1067
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	235, 351
Bsp143I	GATC	2 cut(s)	33, 1022
BspACI	CCGC	3 cut(s)	183, 195, 1041
BspANI	GGCC	6 cut(s)	198, 239, 324, 677, 1012, 1067
BspCNI	CTCAG	3 cut(s)	176, 455, 629
BspLI	GGNNCC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	827
BspT104I	TTCGAA	1 cut(s)	743
BsrDI	GCAATG	3 cut(s)	305, 590, 806
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	33, 1022
Bst4CI	ACNGT	5 cut(s)	230, 265, 772, 803, 1073
Bst6I	CTCTTC	2 cut(s)	827, 931
BstBI	TTCGAA	1 cut(s)	743
BstDEI	CTNAG	6 cut(s)	163, 328, 442, 490, 616, 906
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	834
BstKTI	GATC	2 cut(s)	36, 1025
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	2 cut(s)	33, 1022
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 140, 296
BstNSI	RCATGY	1 cut(s)	155
BstSLI	GKGCMC	2 cut(s)	235, 351
BstV1I	GCAGC	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	6 cut(s)	198, 239, 324, 677, 1012, 1067
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	834
BtsIMutI	CAGTG	1 cut(s)	777
Cfr13I	GGNCC	4 cut(s)	197, 238, 375, 446
Csp6I	GTAC	1 cut(s)	487
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	2 cut(s)	144, 152
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	6 cut(s)	163, 328, 442, 490, 616, 906
DpnI	GATC	2 cut(s)	35, 1024
DpnII	GATC	2 cut(s)	33, 1022
DraI	TTTAAA	1 cut(s)	546
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	2 cut(s)	675, 1065
Eam1104I	CTCTTC	2 cut(s)	827, 931
EarI	CTCTTC	2 cut(s)	827, 931
Eco47I	GGWCC	2 cut(s)	375, 446
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	522
FaeI	CATG	2 cut(s)	147, 155
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	2 cut(s)	143, 151
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	3 cut(s)	225, 276, 333
Fnu4HI	GCNGC	3 cut(s)	196, 211, 1041
FokI	GGATG	1 cut(s)	841
Fsp4HI	GCNGC	3 cut(s)	196, 211, 1041
FspBI	CTAG	2 cut(s)	111, 725
GluI	GCNGC	3 cut(s)	196, 211, 1041
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	6 cut(s)	198, 239, 324, 677, 1012, 1067
HapII	CCGG	3 cut(s)	219, 812, 884
Hin1II	CATG	2 cut(s)	147, 155
HincII	GTYRAC	2 cut(s)	334, 950
HindII	GTYRAC	2 cut(s)	334, 950
HinfI	GANTC	3 cut(s)	222, 815, 880
HpaII	CCGG	3 cut(s)	219, 812, 884
HphI	GGTGA	3 cut(s)	40, 151, 172
Hpy166II	GTNNAC	7 cut(s)	226, 233, 277, 334, 349, 722, 950
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	712, 1018
Hpy8I	GTNNAC	7 cut(s)	226, 233, 277, 334, 349, 722, 950
HpyCH4III	ACNGT	5 cut(s)	230, 265, 772, 803, 1073
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	210, 233, 349, 659, 999
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 140, 296
HpyF3I	CTNAG	6 cut(s)	163, 328, 442, 490, 616, 906
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	147, 155
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	33, 1022
LguI	GCTCTTC	1 cut(s)	827
LmnI	GCTCC	2 cut(s)	841, 1076
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	2 cut(s)	111, 725
MaeII	ACGT	1 cut(s)	204
MalI	GATC	2 cut(s)	35, 1024
MboI	GATC	2 cut(s)	33, 1022
MboII	GAAGA	4 cut(s)	326, 398, 844, 918
MhlI	GDGCHC	2 cut(s)	235, 351
MlsI	TGGCCA	2 cut(s)	677, 1067
MluCI	AATT	5 cut(s)	437, 522, 764, 994, 1060
MluNI	TGGCCA	2 cut(s)	677, 1067
MlyI	GAGTC	2 cut(s)	231, 824
MmeI	TCCRAC	2 cut(s)	777, 891
Mox20I	TGGCCA	2 cut(s)	677, 1067
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	2 cut(s)	677, 1067
MseI	TTAA	5 cut(s)	105, 545, 567, 695, 921
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	2 cut(s)	677, 1067
MspI	CCGG	3 cut(s)	219, 812, 884
MwoI	GCNNNNNNNGC	3 cut(s)	131, 140, 296
NdeII	GATC	2 cut(s)	33, 1022
NlaIII	CATG	2 cut(s)	147, 155
NlaIV	GGNNCC	1 cut(s)	376
NmeAIII	GCCGAG	1 cut(s)	300
NspI	RCATGY	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	743
OliI	CACNNNNGTG	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	827
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	880
PkrI	GCNGC	3 cut(s)	197, 212, 1042
PleI	GAGTC	2 cut(s)	230, 823
PpsI	GAGTC	2 cut(s)	230, 823
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	4 cut(s)	197, 238, 375, 446
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	827
SaqAI	TTAA	5 cut(s)	105, 545, 567, 695, 921
SatI	GCNGC	3 cut(s)	196, 211, 1041
Sau3AI	GATC	2 cut(s)	33, 1022
Sau96I	GGNCC	4 cut(s)	197, 238, 375, 446
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	2 cut(s)	231, 824
SduI	GDGCHC	2 cut(s)	235, 351
SfaNI	GCATC	1 cut(s)	544
SfuI	TTCGAA	1 cut(s)	743
SinI	GGWCC	2 cut(s)	375, 446
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	437, 522, 764, 994, 1060
SsiI	CCGC	3 cut(s)	183, 195, 1041
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	2 cut(s)	111, 725
TaaI	ACNGT	5 cut(s)	230, 265, 772, 803, 1073
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	5 cut(s)	333, 520, 540, 552, 743
TasI	AATT	5 cut(s)	437, 522, 764, 994, 1060
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	2 cut(s)	198, 1043
TfiI	GAWTC	1 cut(s)	880
Tru1I	TTAA	5 cut(s)	105, 545, 567, 695, 921
Tru9I	TTAA	5 cut(s)	105, 545, 567, 695, 921
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	9 cut(s)	17, 43, 294, 447, 579, 698, 795, 845, 1037
TspGWI	ACGGA	3 cut(s)	16, 613, 879
TspRI	CASTG	1 cut(s)	777
VneI	GTGCAC	2 cut(s)	231, 347
VpaK11BI	GGWCC	2 cut(s)	375, 446
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	155
XmiI	GTMKAC	3 cut(s)	225, 276, 333
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	111, 725
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.