pycom16g16700

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013807
Physical Location & Seq
Reverse (-)
12589559 .. 12590743
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g16700.1

Sequence Viewer

Length: 1185 bp
ATGATAAACAAGCTTCTCAAAACAATGAAAACCCCTAATCTCACTCTAGTCCTCTCTCTCCTCCTCTCTTTCATATTCCTCTCCAAACCCTCTCATCAGGCTTCTAATCCTCCTCCACCCCTTCCCAACCCTAGACTTCTAAAGGCTTACACAGCCCTCCAAGCATGGAAACATGTCATCACCTCCGACCCCAACAACTTCACCGCCAACTGGTGCGGCCTAAATGTTTGCAAATACACCGGTGTCTACTGCGCACCAGCTCCCGATGACCCTCACACTGTCACAGTGTCCGGCATAGACCTTAACCATGCCAACATCGTCGGTTCATTGCCTGAAGAGCTTGGCCTCTTAACTGACCTAGCCCTCTTCCACGTCAACTCCAATCGCTTCTATGGCACTGTTCCTTATAGCTTTCGTTACCTTCACCTTCTCCACGAGCTCGACATTAGCAACAACCAATTCTCAGGCCAATTTCCTTTGTCTGTTCTTTACCTTCTATCACTCAAATTCTTAGATGTCAGGTACAATAATTTTCTGGGAGAAATTCCATCTACCCTCTTCGATTTAAAACTCGATGCGTTGTTCGTCAACAACAACAAGTTCCAATTCTCATTGCCACAAAACATCGGCAACTCCTCACTCTCTGTGATTGTCTTGGCAAATAATGATCTTAAGGGTTGCATCCCTTCAAGTTTTACGAATTTGAAGGACACATTAGACGAAGTTATACTCATGAATAGTGGACTAAGGGGTTGTTTGCCATCAAATTTAGGGCTATTGGACAAAGTCAAGGTGTTTGATATAAGCAACAATGACCTTGTGGGCGCGTTGCCAGAATCTATGGGTGGAATGAAGAGTTTGGAGCAGCTAAACGTGGCAAATAACAAATTTTCCGGGAAGGTTCCGGCAAGTATTTGCTCTTTGCCTAAGTTGGAGAACTTTACCTATTCTTATAACTATTTCTGTACTCAACCACCAACGTGCATGAAGTTGCAAGAACAAAATGACAGGAAGAATTGTATTCCATATAGGCAATTGCAACGATCACCAAAAGAGTGTGCGACATTTTATGCAAATCTGGTCAATTGTGATGCCCTTGGCTGCAAACCTAGAAGTCCAAGCCCGCCACCACCACGCTCACCACCGCCTCCTCCTCCGCCTCATGTGGCTTATCATTATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

395

Amino Acids

43.74

Weight (kDa)

8.51

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 263 - 319 9.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22800
fragaria_vesca FvH4_4g00870
malus_domestica MD16G1198100.v1.1
prunus_persica Prupe.1G019600_v2.0.a1
pyrus_communis pycom16g16700
rosa_chinensis RchiOBHm_Chr4g0387491
rosa_laevigata RLG00000010118
rosa_multiflora Rmu_co8216490.1_g000001 Rmu_sc0009161.1_g000003 Rmu_sc0011414.1_g000003
rosa_roxburghii Rroxscaffold_5G00334170
rosa_rugosa Rorug03G0309900
rosa_samantha Rh4AG016200 Rh4BG010900 Rh4CG017400 Rh4DG012100
rosa_wichuraiana Rw4G001030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
Acc16I TGCGCA 1 cut(s) 253
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 827
AciI CCGC 5 cut(s) 204, 216, 1124, 1145, 1157
AcsI RAATTY 5 cut(s) 506, 543, 700, 766, 887
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 2 cut(s) 524, 967
AfiI CCNNNNNNNGG 1 cut(s) 210
AflII CTTAAG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 172
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 2 cut(s) 690, 706
AjiI CACGTC 1 cut(s) 373
AleI CACNNNNGTG 1 cut(s) 979
AluBI AGCT 6 cut(s) 13, 260, 340, 411, 439, 868
AluI AGCT 6 cut(s) 13, 260, 340, 411, 439, 868
Alw21I GWGCWC 1 cut(s) 441
AoxI GGCC 3 cut(s) 217, 343, 466
ApeKI GCWGC 2 cut(s) 865, 1101
ApoI RAATTY 5 cut(s) 506, 543, 700, 766, 887
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 2 cut(s) 254, 827
AsuC2I CCSGG 1 cut(s) 895
AsuHPI GGTGA 5 cut(s) 172, 193, 416, 1038, 1131
BanII GRGCYC 1 cut(s) 441
BauI CACGAG 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 877, 1088
BccI CCATC 2 cut(s) 556, 769
BcnI CCSGG 1 cut(s) 895
BfaI CTAG 4 cut(s) 47, 132, 359, 1110
BfrI CTTAAG 1 cut(s) 671
BisI GCNGC 3 cut(s) 217, 866, 1102
BlsI GCNGC 3 cut(s) 218, 867, 1103
Bme1390I CCNGG 1 cut(s) 895
BmgBI CACGTC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 903
BmrFI CCNGG 1 cut(s) 895
BmsI GCATC 3 cut(s) 565, 690, 1081
BpuMI CCSGG 1 cut(s) 895
BsaJI CCNNGG 1 cut(s) 1096
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 326, 611
BseDI CCNNGG 1 cut(s) 1096
BseGI GGATG 1 cut(s) 681
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 2 cut(s) 326, 611
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 6 cut(s) 50, 53, 102, 625, 1140, 1143
BseXI GCAGC 2 cut(s) 877, 1088
Bsh1236I CGCG 1 cut(s) 827
BshFI GGCC 3 cut(s) 219, 345, 468
BshTI ACCGGT 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 4 cut(s) 240, 291, 894, 905
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 3 cut(s) 219, 345, 468
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 667, 1043
BspACI CCGC 5 cut(s) 204, 216, 1124, 1145, 1157
BspANI GGCC 3 cut(s) 219, 345, 468
BspCNI CTCAG 1 cut(s) 476
BspFNI CGCG 1 cut(s) 827
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 1 cut(s) 903
BspQI GCTCTTC 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 671
BsrDI GCAATG 2 cut(s) 326, 611
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 1096
BssMI GATC 2 cut(s) 667, 1043
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 1096
Bst2BI CACGAG 1 cut(s) 434
Bst4CI ACNGT 3 cut(s) 280, 286, 400
Bst6I CTCTTC 4 cut(s) 330, 371, 563, 848
BstAFI CTTAAG 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 1124
BstDEI CTNAG 4 cut(s) 463, 511, 746, 927
BstF5I GGATG 1 cut(s) 681
BstFNI CGCG 1 cut(s) 827
BstHHI GCGC 2 cut(s) 254, 827
BstKTI GATC 2 cut(s) 670, 1046
BstMBI GATC 2 cut(s) 667, 1043
BstMWI GCNNNNNNNGC 4 cut(s) 152, 161, 337, 393
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 893
BstUI CGCG 1 cut(s) 827
BstV1I GCAGC 2 cut(s) 877, 1088
BsuRI GGCC 3 cut(s) 219, 345, 468
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 1 cut(s) 681
BtsIMutI CAGTG 3 cut(s) 276, 291, 396
Cac8I GCNNGC 1 cut(s) 1124
CciI TCATGA 1 cut(s) 732
CfoI GCGC 2 cut(s) 254, 827
Cfr10I RCCGGY 1 cut(s) 239
Csp6I GTAC 2 cut(s) 523, 966
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 6 cut(s) 165, 173, 308, 733, 985, 1163
CviQI GTAC 2 cut(s) 523, 966
DdeI CTNAG 4 cut(s) 463, 511, 746, 927
DpnI GATC 2 cut(s) 669, 1045
DpnII GATC 2 cut(s) 667, 1043
DraI TTTAAA 1 cut(s) 567
Eam1104I CTCTTC 4 cut(s) 330, 371, 563, 848
EarI CTCTTC 4 cut(s) 330, 371, 563, 848
EciI GGCGGA 1 cut(s) 1146
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 1096
Eco24I GRGCYC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 1096
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 1096
FaeI CATG 6 cut(s) 168, 176, 311, 736, 988, 1166
FatI CATG 6 cut(s) 164, 172, 307, 732, 984, 1162
FauI CCCGC 1 cut(s) 1131
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 217, 866, 1102
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 3 cut(s) 217, 866, 1102
FspBI CTAG 4 cut(s) 47, 132, 359, 1110
FspI TGCGCA 1 cut(s) 253
GlaI GCGC 2 cut(s) 253, 826
GluI GCNGC 3 cut(s) 217, 866, 1102
HaeIII GGCC 3 cut(s) 219, 345, 468
HapII CCGG 4 cut(s) 240, 291, 894, 905
HhaI GCGC 2 cut(s) 254, 827
Hin1II CATG 6 cut(s) 168, 176, 311, 736, 988, 1166
Hin6I GCGC 2 cut(s) 252, 825
HinP1I GCGC 2 cut(s) 252, 825
HincII GTYRAC 2 cut(s) 376, 589
HindII GTYRAC 2 cut(s) 376, 589
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 836
HpaII CCGG 4 cut(s) 240, 291, 894, 905
HphI GGTGA 5 cut(s) 172, 193, 416, 1038, 1131
Hpy166II GTNNAC 4 cut(s) 247, 376, 589, 743
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 263, 733
Hpy8I GTNNAC 4 cut(s) 247, 376, 589, 743
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 7 cut(s) 131, 431, 437, 503, 696, 700, 892
HpyCH4III ACNGT 3 cut(s) 280, 286, 400
HpyCH4IV ACGT 3 cut(s) 372, 873, 980
HpyCH4V TGCA 7 cut(s) 231, 681, 984, 994, 1039, 1073, 1104
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 161, 337, 393
HpyF3I CTNAG 4 cut(s) 463, 511, 746, 927
HpySE526I ACGT 3 cut(s) 372, 873, 980
Hsp92II CATG 6 cut(s) 168, 176, 311, 736, 988, 1166
HspAI GCGC 2 cut(s) 252, 825
Kzo9I GATC 2 cut(s) 667, 1043
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 265, 862
Lsp1109I GCAGC 2 cut(s) 877, 1088
LweI GCATC 3 cut(s) 565, 690, 1081
MaeI CTAG 4 cut(s) 47, 132, 359, 1110
MaeII ACGT 3 cut(s) 372, 873, 980
MaeIII GTNAC 2 cut(s) 280, 416
MalI GATC 2 cut(s) 669, 1045
MboI GATC 2 cut(s) 667, 1043
MboII GAAGA 5 cut(s) 347, 358, 550, 865, 1024
MfeI CAATTG 2 cut(s) 1034, 1084
MhlI GDGCHC 1 cut(s) 441
MmeI TCCRAC 2 cut(s) 210, 912
MseI TTAA 4 cut(s) 303, 350, 566, 672
MslI CAYNNNNRTG 1 cut(s) 979
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 4 cut(s) 240, 291, 894, 905
MspR9I CCNGG 1 cut(s) 895
MunI CAATTG 2 cut(s) 1034, 1084
MvnI CGCG 1 cut(s) 827
MwoI GCNNNNNNNGC 4 cut(s) 152, 161, 337, 393
NciI CCSGG 1 cut(s) 895
NdeII GATC 2 cut(s) 667, 1043
NlaIII CATG 6 cut(s) 168, 176, 311, 736, 988, 1166
NlaIV GGNNCC 1 cut(s) 903
NmuCI GTSAC 1 cut(s) 280
NsbI TGCGCA 1 cut(s) 253
NspI RCATGY 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 979
PagI TCATGA 1 cut(s) 732
PciI ACATGT 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 836
PflFI GACNNNGTC 1 cut(s) 785
PfoI TCCNGGA 1 cut(s) 893
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 3 cut(s) 218, 867, 1103
PscI ACATGT 1 cut(s) 172
PsiI TTATAA 1 cut(s) 954
Psp124BI GAGCTC 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 903
PsyI GACNNNGTC 1 cut(s) 785
RsaI GTAC 2 cut(s) 524, 967
RsaNI GTAC 2 cut(s) 523, 966
RseI CAYNNNNRTG 1 cut(s) 979
SacI GAGCTC 1 cut(s) 441
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 4 cut(s) 303, 350, 566, 672
SatI GCNGC 3 cut(s) 217, 866, 1102
Sau3AI GATC 2 cut(s) 667, 1043
ScrFI CCNGG 1 cut(s) 895
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 3 cut(s) 565, 690, 1081
SgrAI CRCCGGYG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 979
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SsiI CCGC 5 cut(s) 204, 216, 1124, 1145, 1157
SspMI CTAG 4 cut(s) 47, 132, 359, 1110
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 893
StyI CCWWGG 1 cut(s) 1096
TaaI ACNGT 3 cut(s) 280, 286, 400
TaiI ACGT 3 cut(s) 375, 876, 983
TaqI TCGA 3 cut(s) 441, 561, 573
TatI WGTACW 1 cut(s) 965
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 836
Tru1I TTAA 4 cut(s) 303, 350, 566, 672
Tru9I TTAA 4 cut(s) 303, 350, 566, 672
TscAI CASTG 3 cut(s) 283, 291, 403
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 865, 1101
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 6 cut(s) 41, 61, 315, 749, 866, 1001
TspRI CASTG 3 cut(s) 283, 291, 403
Tth111I GACNNNGTC 1 cut(s) 785
Vha464I CTTAAG 1 cut(s) 671
XapI RAATTY 5 cut(s) 506, 543, 700, 766, 887
XceI RCATGY 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 4 cut(s) 47, 132, 359, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.