Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8216490.1

Orthogroup ID

OG0013807

Physical Location & Seq

Genomic Coordinates Forward (+)

145 .. 734

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8216490.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 590 bp

atgaaatctccaaatctcactctatccgttttaatcattctctctatcaccttcatctccaaaccctcgcaccaagtttctcattcccctcaaaccattcccgctaatgctagacttcaaaaggcttaccaagctctccaagcatggaaacttgccatcacctcagacccgaataacttcaccgccaactggtgtggcccaaacgtatgcagctacaccggagtctactgtgcacaggcccttgatgaccctcacatcactaccgtggctggagtagacctaaaccacgccaacatagctggttcattgcctgaagaactcggcctcttagtcgacatagctgtcgtgcacataaactcaaacaagttctgtggcaccattccttccagctttcgtggtctttatcttctttatgagcttgatattagtaataaccaattctcaggttcatttccttcatctgttctttgccttccttcactcaagtacttggatattagatacaacaactttgaaggtcgaattcctcctgcccttttcgatttaaaactcgatgccttgttccttaacaataacaagttccaatgttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005199

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

197

Amino Acids

21.62

Weight (kDa)

6.49

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22800
fragaria_vesca	FvH4_4g00870
malus_domestica	MD16G1198100.v1.1
prunus_persica	Prupe.1G019600_v2.0.a1
pyrus_communis	pycom16g16700
rosa_chinensis	RchiOBHm_Chr4g0387491
rosa_laevigata	RLG00000010118
rosa_multiflora	Rmu_co8216490.1_g000001 Rmu_sc0009161.1_g000003 Rmu_sc0011414.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334170
rosa_rugosa	Rorug03G0309900
rosa_samantha	Rh4AG016200 Rh4BG010900 Rh4CG017400 Rh4DG012100
rosa_wichuraiana	Rw4G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	374
AccI	GTMKAC	3 cut(s)	225, 276, 333
AciI	CCGC	2 cut(s)	102, 183
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	119, 515
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	6 cut(s)	134, 213, 299, 341, 390, 418
AluI	AGCT	6 cut(s)	134, 213, 299, 341, 390, 418
Alw21I	GWGCWC	2 cut(s)	235, 351
Alw44I	GTGCAC	2 cut(s)	231, 347
AoxI	GGCC	3 cut(s)	196, 237, 322
ApaLI	GTGCAC	2 cut(s)	231, 347
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	197, 238
AsuHPI	GGTGA	3 cut(s)	40, 151, 172
BaeGI	GKGCMC	2 cut(s)	235, 351
BanI	GGYRCC	1 cut(s)	374
Bbv12I	GWGCWC	2 cut(s)	235, 351
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BmcAI	AGTACT	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	197, 238
BmiI	GGNNCC	1 cut(s)	376
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	177, 456
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	2 cut(s)	235, 351
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	3 cut(s)	198, 239, 324
BshNI	GGYRCC	1 cut(s)	374
BsiHKAI	GWGCWC	2 cut(s)	235, 351
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	189
BsnI	GGCC	3 cut(s)	198, 239, 324
Bsp1286I	GDGCHC	2 cut(s)	235, 351
BspACI	CCGC	2 cut(s)	102, 183
BspANI	GGCC	3 cut(s)	198, 239, 324
BspCNI	CTCAG	2 cut(s)	176, 455
BspLI	GGNNCC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	230, 265
BstDEI	CTNAG	3 cut(s)	163, 328, 442
BstDSI	CCRYGG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 140, 296
BstSLI	GKGCMC	2 cut(s)	235, 351
BstV1I	GCAGC	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	198, 239, 324
BtgI	CCRYGG	1 cut(s)	264
Cfr13I	GGNCC	2 cut(s)	197, 238
Csp6I	GTAC	1 cut(s)	487
CspCI	CAANNNNNGTGG	4 cut(s)	175, 210, 352, 387
CviAII	CATG	1 cut(s)	144
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	3 cut(s)	163, 328, 442
DraI	TTTAAA	1 cut(s)	546
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	522
FaeI	CATG	1 cut(s)	147
FaiI	YATR	6 cut(s)	145, 208, 296, 338, 353, 414
FatI	CATG	1 cut(s)	143
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	3 cut(s)	225, 276, 333
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	198, 239, 324
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	40, 151, 172
Hpy166II	GTNNAC	5 cut(s)	226, 233, 277, 334, 349
Hpy188I	TCNGA	1 cut(s)	166
Hpy8I	GTNNAC	5 cut(s)	226, 233, 277, 334, 349
HpyAV	CCTTC	6 cut(s)	61, 393, 465, 482, 486, 509
HpyCH4III	ACNGT	2 cut(s)	230, 265
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	210, 233, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 140, 296
HpyF3I	CTNAG	3 cut(s)	163, 328, 442
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	147
LpnPI	CCDG	9 cut(s)	175, 221, 232, 255, 285, 324, 400, 429, 543
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	204
MboII	GAAGA	2 cut(s)	326, 398
MhlI	GDGCHC	2 cut(s)	235, 351
MluCI	AATT	2 cut(s)	437, 522
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	76, 99, 172, 261, 335, 537
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	32, 545, 567
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	131, 140, 296
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	376
NmeAIII	GCCGAG	1 cut(s)	300
OliI	CACNNNNGTG	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	197, 238
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	32, 545, 567
SatI	GCNGC	1 cut(s)	211
Sau96I	GGNCC	2 cut(s)	197, 238
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	235, 351
SfaNI	GCATC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	437, 522
SsiI	CCGC	2 cut(s)	102, 183
SspMI	CTAG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	230, 265
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	4 cut(s)	333, 520, 540, 552
TasI	AATT	2 cut(s)	437, 522
TatI	WGTACW	1 cut(s)	486
Tru1I	TTAA	3 cut(s)	32, 545, 567
Tru9I	TTAA	3 cut(s)	32, 545, 567
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	5 cut(s)	17, 43, 294, 438, 447
TspGWI	ACGGA	1 cut(s)	16
VneI	GTGCAC	2 cut(s)	231, 347
XapI	RAATTY	1 cut(s)	522
XmiI	GTMKAC	3 cut(s)	225, 276, 333
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.