Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013807

Physical Location & Seq

Genomic Coordinates Reverse (-)

17769774 .. 17770865

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1198100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAAAACCCCTAATCTCAATCTAGCCCTCTCTCTCCTCCTCTCTTTCATATTCCTCTCCAAACCCTCTCATCAGGCTTCTAATCCTCCTCCACCCCTCCCCAACCCTAGACTTCTAAAGGCTTACACAGCCCTCCAAGCATGGAAACATGTCATCACCTCCGACCCCAACAACTTCACCGCCAACTGGTGCGGCCTAAATGTTTGCAACTACACCGGTGTCTACTGCGCACAAGCCCCCGATGACCCTCACACTGTCACAGTGTCCGGCATAGACCTTAACCATGCCAACATCGTCGGTTCATTGCCTGAAGAGCTTGGCCTCTTAACTGACCTAGCCCTCTTCCACGTCAACTCCAATCGCTTCTATGGCACTGTTCCATATAGCTTTCGTTACCTTCACCTTCTCCACGAGCTCGACATTAGCAACAACCAATTCTCAGGCCAATTTCCTTTGTCTGTTCTTTACCTTCTATCACTCAAATTCTTAGATGTCAGGTACAATAATTTTCGGGGAGAAATTCCATCTACGCTCTTCGATTTAAAACTCGATGCGTTGTTCGTCAACAACAACAAGTTCCAATTCTCATTGCCACAAAACATCGGCAACTCCTCACTATCTGTGATTGTCTTGGCAAATAATGATCTCAAGGGTTGCATCCCTTCAAGTTTTGCAAATTTGAAGGACACATTAGACGAAGTTATACTCATGAATAGTGGACTAAGGGGTTGTTTGCCATCAAATTTAGGGCTATTGGACAAAGTCAAAGTGTTTGATATAAGCAACAATGACCTAGTGGGCGCGTTGCCAGAATCTACGGGTGGGATGAAGAGTTTGGAGCAGCTAAACGTGGCAAATAACAAATTTTCCGGGAAGGTTCCGGCAAGTATTTGCTCTTTGCCTAAGTTGGAGAACTTTACCTATTCTTATAACTATTTCTGTACTCAACCACCAACGTGCATGAAGTTGCAAGAACAAGATGACAGGAAGAATTGTATTCCATATAGGCAATTGCAACGATCACCAAAAGAGTGTGCGACATTTTATGCAAATCTGGTCAATTGTGATGCCTTTGGCTGCAAACCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005199

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

364

Amino Acids

40.29

Weight (kDa)

7.0

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22800
fragaria_vesca	FvH4_4g00870
malus_domestica	MD16G1198100.v1.1
prunus_persica	Prupe.1G019600_v2.0.a1
pyrus_communis	pycom16g16700
rosa_chinensis	RchiOBHm_Chr4g0387491
rosa_laevigata	RLG00000010118
rosa_multiflora	Rmu_co8216490.1_g000001 Rmu_sc0009161.1_g000003 Rmu_sc0011414.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334170
rosa_rugosa	Rorug03G0309900
rosa_samantha	Rh4AG016200 Rh4BG010900 Rh4CG017400 Rh4DG012100
rosa_wichuraiana	Rw4G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	930
Acc16I	TGCGCA	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	803
AciI	CCGC	2 cut(s)	180, 192
AcsI	RAATTY	5 cut(s)	482, 519, 676, 742, 863
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	500, 943
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	666, 682
AjiI	CACGTC	1 cut(s)	349
AleI	CACNNNNGTG	1 cut(s)	955
AluBI	AGCT	5 cut(s)	316, 387, 415, 844, 1089
AluI	AGCT	5 cut(s)	316, 387, 415, 844, 1089
Alw21I	GWGCWC	1 cut(s)	417
AoxI	GGCC	3 cut(s)	193, 319, 442
ApeKI	GCWGC	2 cut(s)	841, 1077
ApoI	RAATTY	5 cut(s)	482, 519, 676, 742, 863
AsiGI	ACCGGT	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	230, 803
AsuC2I	CCSGG	1 cut(s)	871
AsuHPI	GGTGA	4 cut(s)	148, 169, 392, 1014
BanII	GRGCYC	1 cut(s)	417
BauI	CACGAG	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	853, 1064
BccI	CCATC	2 cut(s)	532, 745
BcnI	CCSGG	1 cut(s)	871
BfaI	CTAG	6 cut(s)	23, 108, 335, 794, 1086, 1090
BisI	GCNGC	3 cut(s)	193, 842, 1078
BlsI	GCNGC	3 cut(s)	194, 843, 1079
Bme1390I	CCNGG	1 cut(s)	871
BmgBI	CACGTC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	1 cut(s)	871
BmsI	GCATC	3 cut(s)	541, 666, 1057
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	871
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	2 cut(s)	302, 587
BseGI	GGATG	2 cut(s)	657, 831
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	2 cut(s)	302, 587
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	4 cut(s)	26, 29, 78, 601
BseXI	GCAGC	2 cut(s)	853, 1064
Bsh1236I	CGCG	1 cut(s)	803
BshFI	GGCC	3 cut(s)	195, 321, 444
BshTI	ACCGGT	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	417
BsiSI	CCGG	4 cut(s)	216, 267, 870, 881
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	3 cut(s)	195, 321, 444
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	643, 1019
BspACI	CCGC	2 cut(s)	180, 192
BspANI	GGCC	3 cut(s)	195, 321, 444
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	803
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	1 cut(s)	879
BspQI	GCTCTTC	2 cut(s)	306, 539
BsrDI	GCAATG	2 cut(s)	302, 587
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	215
BssMI	GATC	2 cut(s)	643, 1019
BssSI	CACGAG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	256, 262, 376
Bst6I	CTCTTC	4 cut(s)	306, 347, 539, 824
BstDEI	CTNAG	4 cut(s)	439, 487, 722, 903
BstF5I	GGATG	2 cut(s)	657, 831
BstFNI	CGCG	1 cut(s)	803
BstHHI	GCGC	2 cut(s)	230, 803
BstKTI	GATC	2 cut(s)	646, 1022
BstMBI	GATC	2 cut(s)	643, 1019
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 137, 313, 369, 1086
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	869
BstUI	CGCG	1 cut(s)	803
BstV1I	GCAGC	2 cut(s)	853, 1064
BsuRI	GGCC	3 cut(s)	195, 321, 444
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	657, 831
BtsIMutI	CAGTG	3 cut(s)	252, 267, 372
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	2 cut(s)	230, 803
Cfr10I	RCCGGY	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	499, 942
CspAI	ACCGGT	1 cut(s)	215
CviAII	CATG	5 cut(s)	141, 149, 284, 709, 961
CviQI	GTAC	2 cut(s)	499, 942
DdeI	CTNAG	4 cut(s)	439, 487, 722, 903
DpnI	GATC	2 cut(s)	645, 1021
DpnII	GATC	2 cut(s)	643, 1019
DraI	TTTAAA	1 cut(s)	543
Eam1104I	CTCTTC	4 cut(s)	306, 347, 539, 824
EarI	CTCTTC	4 cut(s)	306, 347, 539, 824
Ecl136II	GAGCTC	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	417
FaeI	CATG	5 cut(s)	144, 152, 287, 712, 964
FatI	CATG	5 cut(s)	140, 148, 283, 708, 960
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	193, 842, 1078
FokI	GGATG	2 cut(s)	644, 838
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	3 cut(s)	193, 842, 1078
FspBI	CTAG	6 cut(s)	23, 108, 335, 794, 1086, 1090
FspI	TGCGCA	1 cut(s)	229
GlaI	GCGC	2 cut(s)	229, 802
GluI	GCNGC	3 cut(s)	193, 842, 1078
HaeIII	GGCC	3 cut(s)	195, 321, 444
HapII	CCGG	4 cut(s)	216, 267, 870, 881
HhaI	GCGC	2 cut(s)	230, 803
Hin1II	CATG	5 cut(s)	144, 152, 287, 712, 964
Hin6I	GCGC	2 cut(s)	228, 801
HinP1I	GCGC	2 cut(s)	228, 801
HincII	GTYRAC	2 cut(s)	352, 565
HindII	GTYRAC	2 cut(s)	352, 565
HinfI	GANTC	1 cut(s)	812
HpaII	CCGG	4 cut(s)	216, 267, 870, 881
HphI	GGTGA	4 cut(s)	148, 169, 392, 1014
Hpy166II	GTNNAC	4 cut(s)	223, 352, 565, 719
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	709
Hpy8I	GTNNAC	4 cut(s)	223, 352, 565, 719
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	6 cut(s)	407, 413, 479, 672, 676, 868
HpyCH4III	ACNGT	3 cut(s)	256, 262, 376
HpyCH4IV	ACGT	3 cut(s)	348, 849, 956
HpyCH4V	TGCA	8 cut(s)	207, 657, 674, 960, 970, 1015, 1049, 1080
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 137, 313, 369, 1086
HpyF3I	CTNAG	4 cut(s)	439, 487, 722, 903
HpySE526I	ACGT	3 cut(s)	348, 849, 956
Hsp92II	CATG	5 cut(s)	144, 152, 287, 712, 964
HspAI	GCGC	2 cut(s)	228, 801
Kzo9I	GATC	2 cut(s)	643, 1019
LguI	GCTCTTC	2 cut(s)	306, 539
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	2 cut(s)	853, 1064
LweI	GCATC	3 cut(s)	541, 666, 1057
MaeI	CTAG	6 cut(s)	23, 108, 335, 794, 1086, 1090
MaeII	ACGT	3 cut(s)	348, 849, 956
MaeIII	GTNAC	2 cut(s)	256, 392
MalI	GATC	2 cut(s)	645, 1021
MboI	GATC	2 cut(s)	643, 1019
MboII	GAAGA	5 cut(s)	323, 334, 526, 841, 1000
MfeI	CAATTG	2 cut(s)	1010, 1060
MhlI	GDGCHC	1 cut(s)	417
MmeI	TCCRAC	2 cut(s)	186, 888
MseI	TTAA	3 cut(s)	279, 326, 542
MslI	CAYNNNNRTG	1 cut(s)	955
MspI	CCGG	4 cut(s)	216, 267, 870, 881
MspR9I	CCNGG	1 cut(s)	871
MunI	CAATTG	2 cut(s)	1010, 1060
MvnI	CGCG	1 cut(s)	803
MwoI	GCNNNNNNNGC	5 cut(s)	128, 137, 313, 369, 1086
NciI	CCSGG	1 cut(s)	871
NdeII	GATC	2 cut(s)	643, 1019
NlaIII	CATG	5 cut(s)	144, 152, 287, 712, 964
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	1 cut(s)	256
NsbI	TGCGCA	1 cut(s)	229
NspI	RCATGY	1 cut(s)	152
OliI	CACNNNNGTG	1 cut(s)	955
PagI	TCATGA	1 cut(s)	708
PciI	ACATGT	1 cut(s)	148
PciSI	GCTCTTC	2 cut(s)	306, 539
PfeI	GAWTC	1 cut(s)	812
PflFI	GACNNNGTC	1 cut(s)	761
PfoI	TCCNGGA	1 cut(s)	869
PinAI	ACCGGT	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	194, 843, 1079
PscI	ACATGT	1 cut(s)	148
PsiI	TTATAA	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	879
PsyI	GACNNNGTC	1 cut(s)	761
RsaI	GTAC	2 cut(s)	500, 943
RsaNI	GTAC	2 cut(s)	499, 942
RseI	CAYNNNNRTG	1 cut(s)	955
SacI	GAGCTC	1 cut(s)	417
SapI	GCTCTTC	2 cut(s)	306, 539
SaqAI	TTAA	3 cut(s)	279, 326, 542
SatI	GCNGC	3 cut(s)	193, 842, 1078
Sau3AI	GATC	2 cut(s)	643, 1019
ScrFI	CCNGG	1 cut(s)	871
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	3 cut(s)	541, 666, 1057
SgrAI	CRCCGGYG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	955
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
SsiI	CCGC	2 cut(s)	180, 192
SspMI	CTAG	6 cut(s)	23, 108, 335, 794, 1086, 1090
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	869
TaaI	ACNGT	3 cut(s)	256, 262, 376
TaiI	ACGT	3 cut(s)	351, 852, 959
TaqI	TCGA	3 cut(s)	417, 537, 549
TatI	WGTACW	1 cut(s)	941
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	812
Tru1I	TTAA	3 cut(s)	279, 326, 542
Tru9I	TTAA	3 cut(s)	279, 326, 542
TscAI	CASTG	3 cut(s)	259, 267, 379
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	841, 1077
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	6 cut(s)	17, 37, 291, 725, 842, 977
TspRI	CASTG	3 cut(s)	259, 267, 379
Tth111I	GACNNNGTC	1 cut(s)	761
XapI	RAATTY	5 cut(s)	482, 519, 676, 742, 863
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	6 cut(s)	23, 108, 335, 794, 1086, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.