Rorug03G0309900

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013807
Physical Location & Seq
Forward (+)
33068642 .. 33073215
4574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0309900.1

Sequence Viewer

Length: 741 bp
ATGGATGCTCAGCACGATCTAAATCTGCATTGTGTGGCGCATACTCGAGCACAGACCCTATGTGGCCCCAGGAATGAGCTACTTGAACAAGATACTAATCTTGCAAATCAACTTCAACAACAGTTGATGGATGTAGACGTCATCACTGTTGGATCATATACGCAAATGGAATACATTGGGTGGGCACAACCGATTTGGAAACGGTTTTCCGACCGAACCGGCCCGAAAATATCAGTTCGGTTACCGAACCGAAAAGAAGAAGGAAAGAAAGTGTTGGAGCAGAGCCGAAACCGAATGAATACGGTTCGGAAACGCTTTGCCACCGACTTGGAAACATCGGATCTCGCCGCCGTTGATCTTCTCTTTCTAAGTCATAGAGAGGTATCCGAGTCAAATTCCTCAAGCGCTAGGGTTCCAAAGTTTGAACCTTTAATCCGAGATAATAATAAAATTGCTCCCAAAAGGCCTGGAAATCTGGTTTCAATTGTTCCCAATAGGCTTGGAAATCTGGTTTCTTCACAGAGGGATCATGGTCTGAGAGTTACACATTTTGTTGAAAGAATTTGCATAGTTGTGGCTTTTGGGGTTTCAGAGGGGAGAAAGGAAGAAACAGAAGAAAAAGGGGGAGACGGGAAGGACAGAGGAGGCAGAGGAATCCAAAAGAGGAGAAGAACTGCTCTACTGCACAGATTCAAGGATGGAGGGGAGAAACTTGGCCAATGCTACCTAGAAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

246

Amino Acids

27.92

Weight (kDa)

9.34

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22800
fragaria_vesca FvH4_4g00870
malus_domestica MD16G1198100.v1.1
prunus_persica Prupe.1G019600_v2.0.a1
pyrus_communis pycom16g16700
rosa_chinensis RchiOBHm_Chr4g0387491
rosa_laevigata RLG00000010118
rosa_multiflora Rmu_co8216490.1_g000001 Rmu_sc0009161.1_g000003 Rmu_sc0011414.1_g000003
rosa_roxburghii Rroxscaffold_5G00334170
rosa_rugosa Rorug03G0309900
rosa_samantha Rh4AG016200 Rh4BG010900 Rh4CG017400 Rh4DG012100
rosa_wichuraiana Rw4G001030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 135
AciI CCGC 1 cut(s) 348
AclWI GGATC 3 cut(s) 160, 348, 534
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 3 cut(s) 394, 561, 735
AcyI GRCGYC 1 cut(s) 138
AfeI AGCGCT 1 cut(s) 406
AgsI TTSAA 6 cut(s) 86, 116, 425, 483, 557, 694
AjnI CCWGG 2 cut(s) 68, 466
AloI GAACNNNNNNTCC 2 cut(s) 417, 449
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 3 cut(s) 160, 348, 534
Ama87I CYCGRG 1 cut(s) 45
Aor51HI AGCGCT 1 cut(s) 406
AoxI GGCC 4 cut(s) 64, 220, 464, 715
ApoI RAATTY 3 cut(s) 394, 561, 735
AspLEI GCGC 2 cut(s) 40, 407
AspS9I GGNCC 2 cut(s) 65, 221
AvaI CYCGRG 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 52
BccI CCATC 2 cut(s) 121, 692
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 2 cut(s) 70, 468
BciVI GTATCC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 2 cut(s) 408, 728
BfoI RGCGCY 1 cut(s) 408
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 1 cut(s) 348
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 70, 468
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 2 cut(s) 65, 221
BmiI GGNNCC 2 cut(s) 67, 414
BmrFI CCNGG 2 cut(s) 70, 468
Bpu1102I GCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 385
BsaBI GATNNNNATC 2 cut(s) 21, 96
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 218
Bse8I GATNNNNATC 2 cut(s) 21, 96
BseBI CCWGG 2 cut(s) 70, 468
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 3 cut(s) 10, 136, 703
BseJI GATNNNNATC 2 cut(s) 21, 96
BseMII CTCAG 2 cut(s) 23, 527
BseRI GAGGAG 2 cut(s) 657, 679
BseSI GKGCMC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 668
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 4 cut(s) 66, 222, 466, 717
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 621
BsmBI CGTCTC 1 cut(s) 621
BsnI GGCC 4 cut(s) 66, 222, 466, 717
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 52, 187
Bsp143I GATC 5 cut(s) 16, 152, 340, 355, 526
Bsp1720I GCTNAGC 1 cut(s) 9
BspACI CCGC 1 cut(s) 348
BspANI GGCC 4 cut(s) 66, 222, 466, 717
BspCNI CTCAG 2 cut(s) 22, 528
BspLI GGNNCC 2 cut(s) 67, 414
BspPI GGATC 3 cut(s) 160, 348, 534
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 5 cut(s) 16, 152, 340, 355, 526
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 70, 468
Bst4CI ACNGT 4 cut(s) 123, 148, 204, 304
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 9, 368, 536
BstEII GGTNACC 1 cut(s) 240
BstF5I GGATG 3 cut(s) 10, 136, 703
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 2 cut(s) 40, 407
BstKTI GATC 5 cut(s) 19, 155, 343, 358, 529
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 5 cut(s) 16, 152, 340, 355, 526
BstMCI CGRYCG 1 cut(s) 214
BstNI CCWGG 2 cut(s) 70, 468
BstPI GGTNACC 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 68, 466
BstSLI GKGCMC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 340
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 1 cut(s) 340
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 4 cut(s) 66, 222, 466, 717
BtsCI GGATG 3 cut(s) 10, 136, 703
BtsIMutI CAGTG 1 cut(s) 144
CfoI GCGC 2 cut(s) 40, 407
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 65, 221
CviAII CATG 1 cut(s) 530
CviJI RGCY 8 cut(s) 66, 79, 222, 285, 466, 499, 578, 717
CviKI_1 RGCY 8 cut(s) 66, 79, 222, 285, 466, 499, 578, 717
DdeI CTNAG 3 cut(s) 9, 368, 536
DpnI GATC 5 cut(s) 18, 154, 342, 357, 528
DpnII GATC 5 cut(s) 16, 152, 340, 355, 526
EaeI YGGCCR 1 cut(s) 715
Eco147I AGGCCT 1 cut(s) 466
Eco47III AGCGCT 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 45
Eco91I GGTNACC 1 cut(s) 240
EcoO65I GGTNACC 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 68, 466
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 1 cut(s) 533
FaiI YATR 7 cut(s) 42, 61, 157, 159, 375, 531, 569
FatI CATG 1 cut(s) 529
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 3 cut(s) 17, 143, 710
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 2 cut(s) 408, 728
GlaI GCGC 2 cut(s) 39, 406
GluI GCNGC 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 4 cut(s) 66, 222, 466, 717
HapII CCGG 1 cut(s) 219
HhaI GCGC 2 cut(s) 40, 407
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 533
Hin6I GCGC 2 cut(s) 38, 405
HinP1I GCGC 2 cut(s) 38, 405
HinfI GANTC 3 cut(s) 389, 654, 690
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 7 cut(s) 211, 309, 340, 388, 437, 537, 592
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 254, 628
HpyCH4III ACNGT 4 cut(s) 123, 148, 204, 304
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 28, 104, 567, 685
HpyF3I CTNAG 3 cut(s) 9, 368, 536
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 533
HspAI GCGC 2 cut(s) 38, 405
Kzo9I GATC 5 cut(s) 16, 152, 340, 355, 526
LmnI GCTCC 2 cut(s) 277, 460
LpnPI CCDG 7 cut(s) 55, 82, 232, 453, 461, 480, 494
MaeI CTAG 2 cut(s) 408, 728
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 240, 541
MalI GATC 5 cut(s) 18, 154, 342, 357, 528
MboI GATC 5 cut(s) 16, 152, 340, 355, 526
MboII GAAGA 6 cut(s) 269, 350, 507, 617, 626, 681
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 52, 187
MlsI TGGCCA 1 cut(s) 717
MluCI AATT 5 cut(s) 394, 450, 483, 561, 735
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 3 cut(s) 130, 234, 255
MnlI CCTC 9 cut(s) 373, 409, 516, 586, 635, 638, 644, 657, 695
Mox20I TGGCCA 1 cut(s) 717
MscI TGGCCA 1 cut(s) 717
MseI TTAA 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 572
Msp20I TGGCCA 1 cut(s) 717
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 2 cut(s) 70, 468
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 2 cut(s) 70, 468
NdeII GATC 5 cut(s) 16, 152, 340, 355, 526
NlaIII CATG 1 cut(s) 533
NlaIV GGNNCC 2 cut(s) 67, 414
PaeR7I CTCGAG 1 cut(s) 45
PceI AGGCCT 1 cut(s) 466
PfeI GAWTC 2 cut(s) 654, 690
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp6I CCWGG 2 cut(s) 68, 466
PspEI GGTNACC 1 cut(s) 240
PspGI CCWGG 2 cut(s) 68, 466
PspN4I GGNNCC 2 cut(s) 67, 414
PspPI GGNCC 2 cut(s) 65, 221
PspXI VCTCGAGB 1 cut(s) 45
PsuI RGATCY 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 572
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 5 cut(s) 16, 152, 340, 355, 526
Sau96I GGNCC 2 cut(s) 65, 221
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 70, 468
SduI GDGCHC 2 cut(s) 52, 187
SetI ASST 5 cut(s) 81, 141, 384, 430, 729
Sfr274I CTCGAG 1 cut(s) 45
SlaI CTCGAG 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 2 cut(s) 45, 400
SmoI CTYRAG 2 cut(s) 45, 400
Sse9I AATT 5 cut(s) 394, 450, 483, 561, 735
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 1 cut(s) 348
SspMI CTAG 2 cut(s) 408, 728
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 68, 466
TaaI ACNGT 4 cut(s) 123, 148, 204, 304
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 46
TaqII GACCGA 1 cut(s) 228
TasI AATT 5 cut(s) 394, 450, 483, 561, 735
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 654, 690
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 151
XapI RAATTY 3 cut(s) 394, 561, 735
XhoI CTCGAG 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 408, 728
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.