Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014951

Physical Location & Seq

Genomic Coordinates Forward (+)

8172479 .. 8174142

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAATCACTTCCCCAGCCGCAAAACCAATCATCTCCGGCAACAACTCCGGCGAAGATCCTCCTTGGGAAATACGAACTCGGTCGTCGTCTCGGTAGCGGAAGCTTCGCGAAAGTCCATTTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCGTTAAAATCATCGAGAAGAAGAAAACAATCGAATCCGGTATGGAACCAAGAATAATCAGAGAGATCGATGCGATGCGTCGTCTTCGTCATCATCCAAACATACTCAAGATCCATGAAGTTATGGCAACCAAATCTAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCAAAAGTCCTCCGTCGTGGACGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTCGCCTCCGCTCTTCGTTTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCTCAGAATCTACTCTTAGATGAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAGCATCTACAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTATACAGCTCCGGAGGTTATTTCACGGAGGGGATACGACGGAGCAAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTTTGTTTTATTGGTTGGCGATGTTCCATTTGATGATTCGAATATCGCTGCGATGTATCGGAAGATTCATCGGAGAGATTATCGGTTTCCGAGCTGGATTTCGAAACAAGCTAAATCGATAATCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTGATGAAAACGAATTGGTTCAAGAAGTCTCTAGAGACTTCTGAGTTTCATCGTAACGTCTTTGATTCGGAAGTAGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTTGATTTGATCTCGTTATCGTCGGGATTAGATCTTTCTGGATTGTTTGAGGCTAAGAAGAAGAAGGAGAGGAGATTCACGGCGAAGGTTTCGGGTGTTGAAGTGGAGGAGAAGGCGAAGATGATTGGGGAGAAGTTAGGTTATGTAGTGAAGAAGAAGATGATGAAGAAGGAAGGAGAAGTGAAGGTTGTTGGATTAGGGAGAGGAAGAACTGTGATTGTGGTGGAAGCAGTGGAGTTAACGGTGGATGTTGTGGTGGTTGAAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTCTGATTTGATTACTGAGCTTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 ko04113 ko04138 map03060 map03070 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

429

Amino Acids

48.27

Weight (kDa)

8.99

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 280	7.8e-71	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	26 - 275	2.9e-37	Protein tyrosine and serine/threonine kinase
NAF	PF03822	305 - 361	3.1e-15	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23000 AT4G14580
fragaria_vesca	FvH4_4g02010
malus_domestica	MD13G1203400.v1.1 MD16G1204900.v1.1
prunus_persica	Prupe.1G026400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0388971
rosa_laevigata	RLG00000010002
rosa_multiflora	Rmu_sc0001395.1_g000009 Rmu_sc0012612.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335300
rosa_rugosa	Rorug03G0321800.1
rosa_samantha	Rh4AG026300 Rh4BG019500 Rh4CG029300
rosa_wichuraiana	Rw4G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AatII	GACGTC	1 cut(s)	361
AccBSI	CCGCTC	1 cut(s)	407
AccII	CGCG	2 cut(s)	110, 379
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	3 cut(s)	20, 99, 405
AclWI	GGATC	3 cut(s)	52, 259, 779
AcyI	GRCGYC	1 cut(s)	358
AdeI	CACNNNGTG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	562
AgsI	TTSAA	7 cut(s)	392, 815, 841, 1028, 1190, 1205, 1253
AluBI	AGCT	9 cut(s)	105, 125, 148, 515, 578, 620, 741, 758, 1249
AluI	AGCT	9 cut(s)	105, 125, 148, 515, 578, 620, 741, 758, 1249
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	4 cut(s)	95, 499, 848, 852
AlwI	GGATC	3 cut(s)	52, 259, 779
Aor13HI	TCCGGA	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	695
Asp700I	GAANNNNTTC	2 cut(s)	9, 836
AspLEI	GCGC	1 cut(s)	379
AsuHPI	GGTGA	4 cut(s)	338, 413, 431, 1220
AsuII	TTCGAA	2 cut(s)	686, 749
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	230, 353
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	682
BceAI	ACGGC	4 cut(s)	140, 390, 567, 1023
BciVI	GTATCC	1 cut(s)	596
BcoDI	GTCTC	4 cut(s)	95, 499, 848, 852
BfaI	CTAG	1 cut(s)	851
BfuI	GTATCC	1 cut(s)	596
BglII	AGATCT	2 cut(s)	294, 958
BisI	GCNGC	2 cut(s)	20, 696
BlsI	GCNGC	2 cut(s)	21, 697
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	4 cut(s)	214, 219, 535, 613
BpiI	GAAGAC	2 cut(s)	230, 353
Bpu14I	TTCGAA	2 cut(s)	686, 749
BpuEI	CTTGAG	2 cut(s)	245, 473
Bsa29I	ATCGAT	2 cut(s)	222, 764
BsaBI	GATNNNNATC	1 cut(s)	789
BsaHI	GRCGYC	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	4 cut(s)	191, 320, 520, 580
Bse1I	ACTGG	1 cut(s)	794
Bse8I	GATNNNNATC	1 cut(s)	789
BseAI	TCCGGA	1 cut(s)	580
BseCI	ATCGAT	2 cut(s)	222, 764
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	3 cut(s)	247, 810, 1180
BseJI	GATNNNNATC	1 cut(s)	789
BseMII	CTCAG	3 cut(s)	470, 852, 1236
BseNI	ACTGG	1 cut(s)	794
BseRI	GAGGAG	2 cut(s)	1012, 1049
BseXI	GCAGC	1 cut(s)	682
BseYI	CCCAGC	1 cut(s)	15
Bsh1236I	CGCG	2 cut(s)	110, 379
Bsh1285I	CGRYCG	1 cut(s)	85
BshVI	ATCGAT	2 cut(s)	222, 764
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	7 cut(s)	38, 50, 192, 321, 521, 566, 581
BsmAI	GTCTC	4 cut(s)	95, 499, 848, 852
BsmBI	CGTCTC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	499
Bsp119I	TTCGAA	2 cut(s)	686, 749
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	8 cut(s)	57, 128, 219, 264, 294, 784, 936, 958
Bsp68I	TCGCGA	1 cut(s)	110
BspACI	CCGC	3 cut(s)	20, 99, 405
BspCNI	CTCAG	3 cut(s)	469, 853, 1237
BspDI	ATCGAT	2 cut(s)	222, 764
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	2 cut(s)	110, 379
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	3 cut(s)	52, 259, 779
BspQI	GCTCTTC	1 cut(s)	414
BspT104I	TTCGAA	2 cut(s)	686, 749
BspTNI	GGTCTC	1 cut(s)	499
BsrBI	CCGCTC	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	794
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	8 cut(s)	57, 128, 219, 264, 294, 784, 936, 958
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	6 cut(s)	431, 443, 820, 1141, 1171, 1227
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	358
BstBI	TTCGAA	2 cut(s)	686, 749
BstDEI	CTNAG	6 cut(s)	291, 456, 469, 861, 981, 1245
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	247, 810, 1180
BstFNI	CGCG	2 cut(s)	110, 379
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	8 cut(s)	60, 131, 222, 267, 297, 787, 939, 961
BstMAI	GTCTC	4 cut(s)	95, 499, 848, 852
BstMBI	GATC	8 cut(s)	57, 128, 219, 264, 294, 784, 936, 958
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstPI	GGTNACC	1 cut(s)	482
BstUI	CGCG	2 cut(s)	110, 379
BstV1I	GCAGC	1 cut(s)	682
BstV2I	GAAGAC	2 cut(s)	230, 353
BstX2I	RGATCY	5 cut(s)	57, 264, 294, 784, 958
BstYI	RGATCY	5 cut(s)	57, 264, 294, 784, 958
Bsu15I	ATCGAT	2 cut(s)	222, 764
BsuI	GTATCC	1 cut(s)	596
BsuTUI	ATCGAT	2 cut(s)	222, 764
BtgZI	GCGATG	3 cut(s)	242, 681, 713
BtsCI	GGATG	3 cut(s)	247, 810, 1180
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	2 cut(s)	825, 1164
BtuMI	TCGCGA	1 cut(s)	110
CfoI	GCGC	1 cut(s)	379
ClaI	ATCGAT	2 cut(s)	222, 764
CseI	GACGC	2 cut(s)	221, 368
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	3 cut(s)	269, 1269, 1285
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	6 cut(s)	291, 456, 469, 861, 981, 1245
DpnI	GATC	8 cut(s)	59, 130, 221, 266, 296, 786, 938, 960
DpnII	GATC	8 cut(s)	57, 128, 219, 264, 294, 784, 936, 958
DraIII	CACNNNGTG	1 cut(s)	555
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	148
Eco91I	GGTNACC	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	3 cut(s)	272, 1272, 1288
FaiI	YATR	9 cut(s)	197, 257, 270, 278, 573, 1071, 1259, 1270, 1286
FatI	CATG	3 cut(s)	268, 1268, 1284
Fnu4HI	GCNGC	2 cut(s)	20, 696
FokI	GGATG	3 cut(s)	234, 817, 1187
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	20, 696
FspBI	CTAG	1 cut(s)	851
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	2 cut(s)	20, 696
GsaI	CCCAGC	1 cut(s)	19
HapII	CCGG	7 cut(s)	38, 50, 192, 321, 521, 566, 581
HgaI	GACGC	2 cut(s)	221, 368
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	272, 1272, 1288
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	1167
HindII	GTYRAC	1 cut(s)	1167
HindIII	AAGCTT	1 cut(s)	103
HpaI	GTTAAC	1 cut(s)	1167
HpaII	CCGG	7 cut(s)	38, 50, 192, 321, 521, 566, 581
HphI	GGTGA	4 cut(s)	338, 413, 431, 1220
Hpy166II	GTNNAC	3 cut(s)	329, 356, 1167
Hpy188III	TCNNGA	9 cut(s)	109, 169, 262, 365, 581, 841, 851, 951, 966
Hpy8I	GTNNAC	3 cut(s)	329, 356, 1167
Hpy99I	CGWCG	8 cut(s)	90, 146, 155, 237, 354, 384, 611, 952
HpyAV	CCTTC	7 cut(s)	985, 1006, 1033, 1090, 1094, 1105, 1199
HpyCH4III	ACNGT	6 cut(s)	431, 443, 820, 1141, 1171, 1227
HpyCH4IV	ACGT	2 cut(s)	358, 876
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	6 cut(s)	291, 456, 469, 861, 981, 1245
HpySE526I	ACGT	2 cut(s)	358, 876
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	3 cut(s)	272, 1272, 1288
HspAI	GCGC	1 cut(s)	377
Kpn2I	TCCGGA	1 cut(s)	580
KspAI	GTTAAC	1 cut(s)	1167
Kzo9I	GATC	8 cut(s)	57, 128, 219, 264, 294, 784, 936, 958
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	3 cut(s)	523, 583, 611
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	4 cut(s)	214, 219, 535, 613
MaeI	CTAG	1 cut(s)	851
MaeII	ACGT	2 cut(s)	358, 876
MaeIII	GTNAC	4 cut(s)	383, 482, 796, 872
MalI	GATC	8 cut(s)	59, 130, 221, 266, 296, 786, 938, 960
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	8 cut(s)	57, 128, 219, 264, 294, 784, 936, 958
MflI	RGATCY	5 cut(s)	57, 264, 294, 784, 958
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	832, 913
MmeI	TCCRAC	2 cut(s)	165, 1099
MroI	TCCGGA	1 cut(s)	580
MroXI	GAANNNNTTC	2 cut(s)	9, 836
MseI	TTAA	3 cut(s)	159, 912, 1166
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	7 cut(s)	38, 50, 192, 321, 521, 566, 581
MvnI	CGCG	2 cut(s)	110, 379
MwoI	GCNNNNNNNGC	1 cut(s)	575
NdeII	GATC	8 cut(s)	57, 128, 219, 264, 294, 784, 936, 958
NlaIII	CATG	3 cut(s)	272, 1272, 1288
NlaIV	GGNNCC	1 cut(s)	201
NruI	TCGCGA	1 cut(s)	110
NspV	TTCGAA	2 cut(s)	686, 749
PciSI	GCTCTTC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	9, 836
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	21, 697
Psp124BI	GAGCTC	1 cut(s)	150
PspEI	GGTNACC	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	201
PsuI	RGATCY	5 cut(s)	57, 264, 294, 784, 958
PsyI	GACNNNGTC	1 cut(s)	431
RruI	TCGCGA	1 cut(s)	110
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	159, 912, 1166
SatI	GCNGC	2 cut(s)	20, 696
Sau3AI	GATC	8 cut(s)	57, 128, 219, 264, 294, 784, 936, 958
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	4 cut(s)	214, 219, 535, 613
SfuI	TTCGAA	2 cut(s)	686, 749
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	2 cut(s)	260, 488
SmoI	CTYRAG	2 cut(s)	260, 488
Sse9I	AATT	2 cut(s)	832, 913
SsiI	CCGC	3 cut(s)	20, 99, 405
SspMI	CTAG	1 cut(s)	851
SstI	GAGCTC	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	6 cut(s)	431, 443, 820, 1141, 1171, 1227
TaiI	ACGT	2 cut(s)	361, 879
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	832, 913
TauI	GCSGC	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	159, 912, 1166
Tru9I	TTAA	3 cut(s)	159, 912, 1166
TscAI	CASTG	2 cut(s)	825, 1164
TseI	GCWGC	1 cut(s)	695
TspDTI	ATGAA	7 cut(s)	285, 704, 839, 857, 914, 1106, 1257
TspGWI	ACGGA	4 cut(s)	338, 552, 610, 624
TspRI	CASTG	2 cut(s)	825, 1164
Tth111I	GACNNNGTC	1 cut(s)	431
XbaI	TCTAGA	1 cut(s)	850
XmnI	GAANNNNTTC	2 cut(s)	9, 836
XspI	CTAG	1 cut(s)	851
ZraI	GACGTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.