Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014951

Physical Location & Seq

Genomic Coordinates Reverse (-)

8367663 .. 8369312

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAATCTCCATATCCAAAATCACCGGAAAAAATCACAGGGACAGTTCTTCTCGGAAAATACGAACTCGGTCGTCGACTAGGAAGCGGAAGCTTCGCTAAAGTCCATGTAGCTCGTTCCATCTCCACCGGCGAACTCGTAGCTATCAAAATCATCGACAAGCAAAAAACCATAGATTCCGGTATGGAGCCGAGAATAATCCGAGAGATCGAAGCGATGCGCCGCCTCCACAACCACCCAAACGTCCTCAAAATCCACGAAGTCATGGCCACTAAATCCAAGATCTACCTCGTCGTCGAATACGCCGCCGGAGGAGAACTCTTCACCAAACTCATCCGATTCGGCCGCCTTAACGAATCGGCGGCGCGTCGTTATTTCCAACAACTCGCCTCCGCGCTCAGTTTCTGCCACCGCGACGGAATCGCTCATCGCGACGTGAAGCCACAGAATCTCCTCCTTGATAAGCAAGGAAACCTCAAGGTCTCCGACTTTGGTCTATCGGCTTTACCGGAGCATCGAAGTAATAACGGATTGCTTCACACGGCATGTGGCACACCGGCTTATACAGCACCGGAAGTAATTGCTCAGAGAGGTTACGACGGTGCTAAAGCTGATGCGTGGTCGTGTGGTGTGTTTCTCTTTGTTCTTCTTGCTGGTTACGTTCCTTTCGATGATGCCAACATTGTTGCTATGTATAGGAAGATTCATAAAAGAGATTACCGGTTTCCGAGCTGGATCTCGAAACCGGCTCGATCTATTATATATAAGTTGCTTGATCCGAATCCGGAGACGAGGATGAGTATAGAAGCTGTGATGGGAACGGTTTGGTTTCAAAAATCTCTAGAGATTTCGGAGTTTCAGTCTAGTGTGTTTGAGTTGGATCGGTTTCTTGAGAAAGAAGCGAAGTCGAGCAATGCGATTACTGCGTTTGATTTGATCTCGTTGTCATCGGGATTGGATCTTTCGGGGTTGTTTGAGAGGAGGAAGAGGAAAGAGAAGAGGTTTACGGCGAGAGTGTCGGCGGAAAGAGTGGTGGAGAAGGCGGGGATGATAGGGGAAAAGTTAGGGTTTAGAGTGGAGAAGAAGGAAGAGACTAAGGTGGTGGGATTGGGAAAAGGAAGAACTGCGGTGGTGGTTGAGGTGGTGGAGTTTGCGGAAGGGTTGGTTGTGGCGGATGTGAAGGTTGTGGTGGAAGGTGAAGAGGAGGAGGAGGAGGTGGAGTCTCATTGGTCGGAGCTAATTGTAGAGCTTGAGGAGATTGTGCTCTCATGGCACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 ko04113 ko04138 map03060 map03070 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

426

Amino Acids

47.83

Weight (kDa)

8.22

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 277	1.6e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 272	4.8e-37	Protein tyrosine and serine/threonine kinase
NAF	PF03822	306 - 361	7.5e-18	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23000 AT4G14580
fragaria_vesca	FvH4_4g02010
malus_domestica	MD13G1203400.v1.1 MD16G1204900.v1.1
prunus_persica	Prupe.1G026400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0388971
rosa_laevigata	RLG00000010002
rosa_multiflora	Rmu_sc0001395.1_g000009 Rmu_sc0012612.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335300
rosa_rugosa	Rorug03G0321800.1
rosa_samantha	Rh4AG026300 Rh4BG019500 Rh4CG029300
rosa_wichuraiana	Rw4G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AccII	CGCG	4 cut(s)	367, 395, 414, 432
AccIII	TCCGGA	1 cut(s)	784
AclWI	GGATC	4 cut(s)	743, 770, 888, 966
AcoI	YGGCCR	2 cut(s)	267, 343
AgeI	ACCGGT	1 cut(s)	720
AgsI	TTSAA	1 cut(s)	833
AjiI	CACGTC	1 cut(s)	436
AluBI	AGCT	8 cut(s)	93, 113, 143, 611, 732, 809, 1237, 1249
AluI	AGCT	8 cut(s)	93, 113, 143, 611, 732, 809, 1237, 1249
Alw21I	GWGCWC	1 cut(s)	1266
Alw26I	GTCTC	4 cut(s)	487, 782, 1085, 1227
AlwI	GGATC	4 cut(s)	743, 770, 888, 966
AlwNI	CAGNNNCTG	1 cut(s)	405
Aor13HI	TCCGGA	1 cut(s)	784
AoxI	GGCC	2 cut(s)	267, 343
AsiGI	ACCGGT	1 cut(s)	720
AspLEI	GCGC	3 cut(s)	222, 367, 397
AsuHPI	GGTGA	3 cut(s)	15, 316, 1208
BalI	TGGCCA	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	1266
BccI	CCATC	2 cut(s)	128, 808
BceAI	ACGGC	2 cut(s)	558, 1023
BcoDI	GTCTC	4 cut(s)	487, 782, 1085, 1227
BfaI	CTAG	3 cut(s)	80, 842, 864
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	4 cut(s)	223, 306, 346, 363
BlsI	GCNGC	4 cut(s)	224, 307, 347, 364
BmgBI	CACGTC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	4 cut(s)	207, 523, 604, 664
BoxI	GACNNNNGTC	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
BpuEI	CTTGAG	3 cut(s)	461, 911, 1271
BsaBI	GATNNNNATC	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	487
BsaWI	WCCGGW	6 cut(s)	25, 179, 508, 571, 720, 784
BsaXI	ACNNNNNCTCC	6 cut(s)	435, 465, 845, 875, 1205, 1235
Bse118I	RCCGGY	4 cut(s)	128, 556, 720, 745
Bse3DI	GCAATG	1 cut(s)	919
Bse8I	GATNNNNATC	1 cut(s)	780
BseAI	TCCGGA	1 cut(s)	784
BseGI	GGATG	4 cut(s)	333, 801, 1053, 1180
BseJI	GATNNNNATC	1 cut(s)	780
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	2 cut(s)	412, 599
BseRI	GAGGAG	8 cut(s)	327, 443, 994, 1217, 1220, 1223, 1226, 1268
BseX3I	CGGCCG	1 cut(s)	343
Bsh1236I	CGCG	4 cut(s)	367, 395, 414, 432
Bsh1285I	CGRYCG	2 cut(s)	73, 346
BshFI	GGCC	2 cut(s)	269, 345
BshTI	ACCGGT	1 cut(s)	720
BsiEI	CGRYCG	2 cut(s)	73, 346
BsiHKAI	GWGCWC	1 cut(s)	1266
BslFI	GGGAC	1 cut(s)	55
BsmAI	GTCTC	4 cut(s)	487, 782, 1085, 1227
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	269, 345
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	1266
Bsp13I	TCCGGA	1 cut(s)	784
Bsp143I	GATC	8 cut(s)	207, 282, 735, 752, 775, 880, 936, 958
Bsp68I	TCGCGA	1 cut(s)	432
BspANI	GGCC	2 cut(s)	269, 345
BspCNI	CTCAG	2 cut(s)	411, 598
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	4 cut(s)	367, 395, 414, 432
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	4 cut(s)	743, 770, 888, 966
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	919
BsrFI	RCCGGY	4 cut(s)	128, 556, 720, 745
BssAI	RCCGGY	4 cut(s)	128, 556, 720, 745
BssMI	GATC	8 cut(s)	207, 282, 735, 752, 775, 880, 936, 958
Bst4CI	ACNGT	3 cut(s)	46, 602, 823
Bst6I	CTCTTC	5 cut(s)	326, 980, 992, 1083, 1194
BstDEI	CTNAG	3 cut(s)	398, 585, 1095
BstF5I	GGATG	4 cut(s)	333, 801, 1053, 1180
BstFNI	CGCG	4 cut(s)	367, 395, 414, 432
BstHHI	GCGC	3 cut(s)	222, 367, 397
BstKTI	GATC	8 cut(s)	210, 285, 738, 755, 778, 883, 939, 961
BstMAI	GTCTC	4 cut(s)	487, 782, 1085, 1227
BstMBI	GATC	8 cut(s)	207, 282, 735, 752, 775, 880, 936, 958
BstMCI	CGRYCG	2 cut(s)	73, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	566, 923, 1270
BstNSI	RCATGY	1 cut(s)	549
BstPAI	GACNNNNGTC	1 cut(s)	492
BstUI	CGCG	4 cut(s)	367, 395, 414, 432
BstX2I	RGATCY	3 cut(s)	282, 735, 958
BstYI	RGATCY	3 cut(s)	282, 735, 958
BstZI	CGGCCG	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	269, 345
BtgZI	GCGATG	2 cut(s)	230, 413
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	4 cut(s)	333, 801, 1053, 1180
BtuMI	TCGCGA	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	405
CfoI	GCGC	3 cut(s)	222, 367, 397
Cfr10I	RCCGGY	4 cut(s)	128, 556, 720, 745
CseI	GACGC	1 cut(s)	356
CspAI	ACCGGT	1 cut(s)	720
CviAII	CATG	4 cut(s)	107, 265, 546, 1269
DdeI	CTNAG	3 cut(s)	398, 585, 1095
DpnI	GATC	8 cut(s)	209, 284, 737, 754, 777, 882, 938, 960
DpnII	GATC	8 cut(s)	207, 282, 735, 752, 775, 880, 936, 958
EaeI	YGGCCR	2 cut(s)	267, 343
EagI	CGGCCG	1 cut(s)	343
Eam1104I	CTCTTC	5 cut(s)	326, 980, 992, 1083, 1194
EarI	CTCTTC	5 cut(s)	326, 980, 992, 1083, 1194
EciI	GGCGGA	2 cut(s)	1037, 1187
EclXI	CGGCCG	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	487
Eco52I	CGGCCG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	782
FaeI	CATG	4 cut(s)	110, 268, 549, 1272
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	4 cut(s)	106, 264, 545, 1268
FauI	CCCGC	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	4 cut(s)	223, 306, 346, 363
FokI	GGATG	4 cut(s)	320, 808, 1060, 1187
Fsp4HI	GCNGC	4 cut(s)	223, 306, 346, 363
FspBI	CTAG	3 cut(s)	80, 842, 864
GlaI	GCGC	3 cut(s)	221, 366, 396
GluI	GCNGC	4 cut(s)	223, 306, 346, 363
HaeIII	GGCC	2 cut(s)	269, 345
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	3 cut(s)	222, 367, 397
Hin1II	CATG	4 cut(s)	110, 268, 549, 1272
Hin6I	GCGC	3 cut(s)	220, 365, 395
HinP1I	GCGC	3 cut(s)	220, 365, 395
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	9 cut(s)	5, 176, 339, 356, 420, 448, 703, 781, 1220
HphI	GGTGA	3 cut(s)	15, 316, 1208
Hpy166II	GTNNAC	2 cut(s)	77, 1005
Hpy188I	TCNGA	9 cut(s)	56, 203, 338, 487, 588, 729, 780, 853, 1234
Hpy188III	TCNNGA	6 cut(s)	431, 739, 785, 842, 890, 951
Hpy8I	GTNNAC	2 cut(s)	77, 1005
Hpy99I	CGWCG	7 cut(s)	78, 296, 299, 372, 419, 437, 602
HpyAV	CCTTC	5 cut(s)	1033, 1078, 1151, 1174, 1187
HpyCH4III	ACNGT	3 cut(s)	46, 602, 823
HpyCH4IV	ACGT	3 cut(s)	243, 435, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	566, 923, 1270
HpyF3I	CTNAG	3 cut(s)	398, 585, 1095
HpySE526I	ACGT	3 cut(s)	243, 435, 660
Hsp92II	CATG	4 cut(s)	110, 268, 549, 1272
HspAI	GCGC	3 cut(s)	220, 365, 395
Kpn2I	TCCGGA	1 cut(s)	784
Kzo9I	GATC	8 cut(s)	207, 282, 735, 752, 775, 880, 936, 958
LmnI	GCTCC	3 cut(s)	187, 511, 1234
LweI	GCATC	4 cut(s)	207, 523, 604, 664
MaeI	CTAG	3 cut(s)	80, 842, 864
MaeII	ACGT	3 cut(s)	243, 435, 660
MaeIII	GTNAC	2 cut(s)	593, 656
MalI	GATC	8 cut(s)	209, 284, 737, 754, 777, 882, 938, 960
MboI	GATC	8 cut(s)	207, 282, 735, 752, 775, 880, 936, 958
MfeI	CAATTG	1 cut(s)	1276
MflI	RGATCY	3 cut(s)	282, 735, 958
MhlI	GDGCHC	1 cut(s)	1266
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	3 cut(s)	579, 1239, 1276
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	1229
MmeI	TCCRAC	4 cut(s)	403, 510, 858, 1212
Mox20I	TGGCCA	1 cut(s)	269
MroI	TCCGGA	1 cut(s)	784
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	269
MunI	CAATTG	1 cut(s)	1276
MvnI	CGCG	4 cut(s)	367, 395, 414, 432
MwoI	GCNNNNNNNGC	3 cut(s)	566, 923, 1270
NdeII	GATC	8 cut(s)	207, 282, 735, 752, 775, 880, 936, 958
NlaIII	CATG	4 cut(s)	110, 268, 549, 1272
NlaIV	GGNNCC	1 cut(s)	189
NmeAIII	GCCGAG	1 cut(s)	216
NruI	TCGCGA	1 cut(s)	432
NspI	RCATGY	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 429, 666, 914
PfeI	GAWTC	8 cut(s)	5, 176, 339, 356, 420, 448, 703, 781
PinAI	ACCGGT	1 cut(s)	720
PkrI	GCNGC	4 cut(s)	224, 307, 347, 364
PleI	GAGTC	1 cut(s)	1228
PpsI	GAGTC	1 cut(s)	1228
PshAI	GACNNNNGTC	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	405
PsuI	RGATCY	3 cut(s)	282, 735, 958
RruI	TCGCGA	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	4 cut(s)	223, 306, 346, 363
Sau3AI	GATC	8 cut(s)	207, 282, 735, 752, 775, 880, 936, 958
SchI	GAGTC	1 cut(s)	1229
SduI	GDGCHC	1 cut(s)	1266
SfaNI	GCATC	4 cut(s)	207, 523, 604, 664
SgrAI	CRCCGGYG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	476, 890, 1250
SmoI	CTYRAG	3 cut(s)	476, 890, 1250
Sse9I	AATT	3 cut(s)	579, 1239, 1276
SspMI	CTAG	3 cut(s)	80, 842, 864
TaaI	ACNGT	3 cut(s)	46, 602, 823
TaiI	ACGT	3 cut(s)	246, 438, 663
TaqI	TCGA	9 cut(s)	76, 156, 210, 297, 517, 669, 740, 751, 908
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	579, 1239, 1276
TauI	GCSGC	4 cut(s)	225, 308, 348, 365
TfiI	GAWTC	8 cut(s)	5, 176, 339, 356, 420, 448, 703, 781
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TspDTI	ATGAA	1 cut(s)	695
TspGWI	ACGGA	2 cut(s)	432, 543
XbaI	TCTAGA	1 cut(s)	841
XceI	RCATGY	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	3 cut(s)	80, 842, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.