Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014951

Physical Location & Seq

Genomic Coordinates Forward (+)

3005372 .. 3006544

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG019500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAACGCGTTTGATATAATCTCCATGTCGTCGGGGCTGGATTTGTCGGGCCTTTTCGAGTCGGAGAACAGGAGCGAGAGGCGGTTCACGGCGAATGTGGCGGCGGAGAGGGTGGCGGAGAAGGTGGGGGAGGTTGGGGAGAGGCTGGGGTATAAAGCGGAGAGAGGGAAGGGTGGGATGAGCGTTGGGTTGGGGAAAGGGGGGAAAGGGAAAGAACGACGTGTCGTTTTGACGGTGGAGATGATGGAGGTGGCGGCGTGTTTGGTTTTAGGGGAAGTGAAGATGGTGGAGGGTGGGGTGGAGTTTCCCGAGCTTCTTTGGGAGGACTTGAAAACTGGGTTAGGGGACGTCGTGGTGTCATGGCAAAACGGTGGCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 ko04113 ko04138 map03060 map03070 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

126

Amino Acids

13.49

Weight (kDa)

4.99

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAF	PF03822	1 - 54	7.8e-19	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23000 AT4G14580
fragaria_vesca	FvH4_4g02010
malus_domestica	MD13G1203400.v1.1 MD16G1204900.v1.1
prunus_persica	Prupe.1G026400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0388971
rosa_laevigata	RLG00000010002
rosa_multiflora	Rmu_sc0001395.1_g000009 Rmu_sc0012612.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335300
rosa_rugosa	Rorug03G0321800.1
rosa_samantha	Rh4AG026300 Rh4BG019500 Rh4CG029300
rosa_wichuraiana	Rw4G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	351
AccII	CGCG	1 cut(s)	8
AciI	CCGC	6 cut(s)	82, 101, 104, 116, 158, 254
AcyI	GRCGYC	1 cut(s)	348
AflIII	ACRYGT	2 cut(s)	6, 220
AgsI	TTSAA	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	221
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	308
BccI	CCATC	2 cut(s)	238, 277
BceAI	ACGGC	1 cut(s)	105
BisI	GCNGC	2 cut(s)	102, 255
BlsI	GCNGC	2 cut(s)	103, 256
BmeT110I	CYCGRG	1 cut(s)	308
BmgBI	CACGTC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	340
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	308
BspACI	CCGC	6 cut(s)	82, 101, 104, 116, 158, 254
BspANI	GGCC	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	235, 371
BstACI	GRCGYC	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstUI	CGCG	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	2 cut(s)	25, 360
CviJI	RGCY	4 cut(s)	37, 51, 145, 313
CviKI_1	RGCY	4 cut(s)	37, 51, 145, 313
EciI	GGCGGA	2 cut(s)	119, 131
Eco88I	CYCGRG	1 cut(s)	308
FaeI	CATG	2 cut(s)	28, 363
FaiI	YATR	4 cut(s)	17, 26, 153, 361
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	2 cut(s)	24, 359
Fnu4HI	GCNGC	2 cut(s)	102, 255
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	2 cut(s)	102, 255
GluI	GCNGC	2 cut(s)	102, 255
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	28, 363
HinfI	GANTC	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	3 cut(s)	34, 222, 353
HpyAV	CCTTC	2 cut(s)	115, 163
HpyCH4III	ACNGT	2 cut(s)	235, 371
HpyCH4IV	ACGT	2 cut(s)	220, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	220, 348
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	28, 363
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	4 cut(s)	23, 55, 131, 321
MaeII	ACGT	2 cut(s)	220, 348
MboII	GAAGA	1 cut(s)	292
MluI	ACGCGT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	72, 102, 124, 135, 158, 241, 283, 316
MseI	TTAA	1 cut(s)	379
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	28, 363
PkrI	GCNGC	2 cut(s)	103, 256
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	379
SatI	GCNGC	2 cut(s)	102, 255
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	68
SetI	ASST	6 cut(s)	126, 135, 223, 252, 315, 351
SsiI	CCGC	6 cut(s)	82, 101, 104, 116, 158, 254
TaaI	ACNGT	2 cut(s)	235, 371
TaiI	ACGT	2 cut(s)	223, 351
TaqI	TCGA	1 cut(s)	57
TauI	GCSGC	2 cut(s)	104, 257
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.