AT3G23200

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012397
Physical Location & Seq
Forward (+)
8281338 .. 8282786
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23200.1

Sequence Viewer

Length: 459 bp
ATGATAGATATCCCTGGAACACCAGGGACTTTGACTGGTTTAGTCTTGAGAATCTCTCAGTGTGTTTTTGCTGCTGGTTCCATTTCTTATATGGTTACTTCTGGTGGCTTCTTTAGCTTCACTGCTTTCTGCTATCTAATAGCAGCAATGGGATTGCAAGTCATATGGAGTTTTGGTCTTGCAATACTAGACACATTCGCATTAGTGAGAAAGAAAACGCTTCTTAGTCCAGTTTTAGTCAGCCTCTTTGTAGTTGGAGATTGGGTAACATCGACATTGTCACTAGCGGGAGCATCGTCTTCCGCGGGAATAACGGTTTTATACTTTGGAGATTTAGGAAGCTGCAGTTTCGAAGCAGAGTGTTGGAAGTACCAACTCTCTGTAGCTTTAGCCTTCCTTTGTTGGATCACTATCGCCGTTTCTTCACTTACTACACTTTGGTTACTTGCTTCAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

152

Amino Acids

16.09

Weight (kDa)

4.93

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 136 9.9e-26 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23200
fragaria_vesca FvH4_4g03370 FvH4_4g03370
malus_domestica MD13G1212200.v1.1
prunus_persica Prupe.1G037100_v2.0.a1 Prupe.1G037100_v2.0.a1
pyrus_communis pycom13g18400
rosa_chinensis RchiOBHm_Chr4g0392361
rosa_laevigata RLG00000009817
rosa_multiflora Rmu_sc0001800.1_g000025
rosa_roxburghii Rroxscaffold_5G00337540
rosa_rugosa Rorug03G0338500 Rorug03G0338600 Rorug03G0338600
rosa_samantha Rh4AG042100 Rh4BG037000 Rh4CG044900 Rh4DG039100
rosa_wichuraiana Rw4G003280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 305
AciI CCGC 3 cut(s) 287, 303, 305
AclWI GGATC 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 1 cut(s) 371
AjnI CCWGG 2 cut(s) 13, 22
AluBI AGCT 3 cut(s) 117, 342, 386
AluI AGCT 3 cut(s) 117, 342, 386
AlwI GGATC 1 cut(s) 413
ApeKI GCWGC 3 cut(s) 71, 143, 342
AsuII TTCGAA 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 58, 155, 329
BceAI ACGGC 1 cut(s) 401
BciT130I CCWGG 2 cut(s) 15, 24
BfaI CTAG 2 cut(s) 188, 284
BfmI CTRYAG 2 cut(s) 343, 381
BisI GCNGC 3 cut(s) 72, 144, 343
BlsI GCNGC 3 cut(s) 73, 145, 344
Bme1390I CCNGG 2 cut(s) 15, 24
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 2 cut(s) 15, 24
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 291
BplI GAGNNNNNCTC 2 cut(s) 40, 72
Bpu14I TTCGAA 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 67
BsaBI GATNNNNATC 2 cut(s) 8, 410
BsaJI CCNNGG 3 cut(s) 13, 23, 303
BsaXI ACNNNNNCTCC 4 cut(s) 160, 190, 249, 279
Bse1I ACTGG 2 cut(s) 40, 230
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 2 cut(s) 8, 410
BseBI CCWGG 2 cut(s) 15, 24
BseDI CCNNGG 3 cut(s) 13, 23, 303
BseJI GATNNNNATC 2 cut(s) 8, 410
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 40, 230
BseXI GCAGC 3 cut(s) 58, 155, 329
Bsh1236I CGCG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 40
Bsp119I TTCGAA 1 cut(s) 351
Bsp143I GATC 1 cut(s) 405
BspACI CCGC 3 cut(s) 287, 303, 305
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 2 cut(s) 40, 230
BssECI CCNNGG 3 cut(s) 13, 23, 303
BssMI GATC 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 15, 24
Bst4CI ACNGT 1 cut(s) 316
BstBI TTCGAA 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 57, 224
BstDSI CCRYGG 1 cut(s) 303
BstFNI CGCG 1 cut(s) 305
BstKTI GATC 1 cut(s) 408
BstMBI GATC 1 cut(s) 405
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 2 cut(s) 15, 24
BstSCI CCNGG 2 cut(s) 13, 22
BstSFI CTRYAG 2 cut(s) 343, 381
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 58, 155, 329
BstV2I GAAGAC 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 303
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 65, 120
Cfr42I CCGCGG 1 cut(s) 306
Csp6I GTAC 1 cut(s) 370
CviJI RGCY 6 cut(s) 108, 117, 243, 342, 386, 392
CviKI_1 RGCY 6 cut(s) 108, 117, 243, 342, 386, 392
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 57, 224
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
Eco32I GATATC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 13, 22
EcoRV GATATC 1 cut(s) 10
FaiI YATR 5 cut(s) 90, 92, 164, 166, 322
FaqI GGGAC 1 cut(s) 40
FauI CCCGC 2 cut(s) 280, 298
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 72, 144, 343
Fsp4HI GCNGC 3 cut(s) 72, 144, 343
FspBI CTAG 2 cut(s) 188, 284
GluI GCNGC 3 cut(s) 72, 144, 343
HinfI GANTC 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 3 cut(s) 157, 182, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 2 cut(s) 57, 224
KspI CCGCGG 1 cut(s) 306
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 7 cut(s) 9, 21, 27, 36, 60, 87, 243
Lsp1109I GCAGC 3 cut(s) 58, 155, 329
LweI GCATC 1 cut(s) 302
MaeI CTAG 2 cut(s) 188, 284
MaeIII GTNAC 4 cut(s) 94, 265, 279, 441
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 2 cut(s) 291, 414
MmeI TCCRAC 3 cut(s) 235, 344, 383
MnlI CCTC 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 15, 24
MvaI CCWGG 2 cut(s) 15, 24
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeI CATATG 1 cut(s) 164
NdeII GATC 1 cut(s) 405
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 279
NspV TTCGAA 1 cut(s) 351
PfeI GAWTC 1 cut(s) 51
PflFI GACNNNGTC 1 cut(s) 277
PkrI GCNGC 3 cut(s) 73, 145, 344
Psp6I CCWGG 2 cut(s) 13, 22
PspGI CCWGG 2 cut(s) 13, 22
PspN4I GGNNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 347
PsyI GACNNNGTC 1 cut(s) 277
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SacII CCGCGG 1 cut(s) 306
SatI GCNGC 3 cut(s) 72, 144, 343
Sau3AI GATC 1 cut(s) 405
ScrFI CCNGG 2 cut(s) 15, 24
SetI ASST 3 cut(s) 119, 344, 388
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 2 cut(s) 343, 381
Sfr303I CCGCGG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 351
SgrBI CCGCGG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
SsiI CCGC 3 cut(s) 287, 303, 305
SspMI CTAG 2 cut(s) 188, 284
StyD4I CCNGG 2 cut(s) 13, 22
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 272, 351
TfiI GAWTC 1 cut(s) 51
TscAI CASTG 2 cut(s) 65, 127
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 3 cut(s) 71, 143, 342
Tsp45I GTSAC 1 cut(s) 279
TspRI CASTG 2 cut(s) 65, 127
Tth111I GACNNNGTC 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XspI CTAG 2 cut(s) 188, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.