RLG00000009817

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012397
Physical Location & Seq
Reverse (-)
58382402 .. 58383304
903 bp
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UTR
Exon/CDS
Intron
RLM00000009817

Sequence Viewer

Length: 387 bp
ATGGCCACCACCTCCAGCTTCTTCAATTTCACAGCTTTCTGCTACCTGATTGCTTCAATGGGTCTGCAAGTGATTTGGAGTTTCGTTCTGGCATTGTTAGATGCATATTCCTTGATGAGAAAGAAGGCCCTCCACAACCATGTATTGGTCAGCCTCTTTGTAGTTGGAGACTGGGTTACAGCAACACTGTCTCTTGCAGCTGCTTCTGCTTCAGCTGGAATAACTGTCCTATACTTTAGTGACCTGAGCCACTGTAATTTTGGAGAGGAATGCCAAAAATACCAGATGGCAGTTGCTTTTGCTTACCTGAGTTGGGTAACAATTGCAATTTCTTCTCTAATCATGCTCTGGCTATTGGCAGCAGTGTCATTGGTCAATACTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

129

Amino Acids

14.03

Weight (kDa)

6.22

Isoelectric Point (pI)

18.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 3 - 106 1.3e-21 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23200
fragaria_vesca FvH4_4g03370 FvH4_4g03370
malus_domestica MD13G1212200.v1.1
prunus_persica Prupe.1G037100_v2.0.a1 Prupe.1G037100_v2.0.a1
pyrus_communis pycom13g18400
rosa_chinensis RchiOBHm_Chr4g0392361
rosa_laevigata RLG00000009817
rosa_multiflora Rmu_sc0001800.1_g000025
rosa_roxburghii Rroxscaffold_5G00337540
rosa_rugosa Rorug03G0338500 Rorug03G0338600 Rorug03G0338600
rosa_samantha Rh4AG042100 Rh4BG037000 Rh4CG044900 Rh4DG039100
rosa_wichuraiana Rw4G003280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 145
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 195
AfiI CCNNNNNNNGG 2 cut(s) 145, 313
AgsI TTSAA 2 cut(s) 25, 57
AluBI AGCT 4 cut(s) 18, 35, 200, 215
AluI AGCT 4 cut(s) 18, 35, 200, 215
Alw26I GTCTC 2 cut(s) 162, 195
AoxI GGCC 2 cut(s) 3, 126
ApeKI GCWGC 3 cut(s) 197, 200, 359
AspS9I GGNCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 3 cut(s) 187, 209, 371
BccI CCATC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 162, 195
BisI GCNGC 3 cut(s) 198, 201, 360
BlsI GCNGC 3 cut(s) 199, 202, 361
BmgT120I GGNCC 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 181
Bpu10I CCTNAGC 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 313
Bse1I ACTGG 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 145, 313
BseMII CTCAG 2 cut(s) 236, 299
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 3 cut(s) 187, 209, 371
BshFI GGCC 2 cut(s) 5, 128
BslI CCNNNNNNNGG 2 cut(s) 145, 313
BsmAI GTCTC 2 cut(s) 162, 195
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 2 cut(s) 5, 128
BspANI GGCC 2 cut(s) 5, 128
BspCNI CTCAG 2 cut(s) 237, 300
BsrI ACTGG 1 cut(s) 176
Bst4CI ACNGT 3 cut(s) 189, 226, 254
BstDEI CTNAG 2 cut(s) 245, 308
BstMAI GTCTC 2 cut(s) 162, 195
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 187, 209, 371
BsuRI GGCC 2 cut(s) 5, 128
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 185, 250, 369
Cfr13I GGNCC 1 cut(s) 127
CviAII CATG 2 cut(s) 140, 343
CviJI RGCY 9 cut(s) 5, 18, 35, 128, 153, 200, 215, 249, 352
CviKI_1 RGCY 9 cut(s) 5, 18, 35, 128, 153, 200, 215, 249, 352
DdeI CTNAG 2 cut(s) 245, 308
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 106
FaeI CATG 2 cut(s) 143, 346
FaiI YATR 4 cut(s) 106, 141, 232, 344
FatI CATG 2 cut(s) 139, 342
Fnu4HI GCNGC 3 cut(s) 198, 201, 360
Fsp4HI GCNGC 3 cut(s) 198, 201, 360
GluI GCNGC 3 cut(s) 198, 201, 360
HaeIII GGCC 2 cut(s) 5, 128
Hin1II CATG 2 cut(s) 143, 346
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 3 cut(s) 189, 226, 254
HpyCH4V TGCA 4 cut(s) 67, 104, 197, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 245, 308
Hsp92II CATG 2 cut(s) 143, 346
LpnPI CCDG 9 cut(s) 28, 59, 74, 157, 201, 257, 296, 320, 334
Lsp1109I GCAGC 3 cut(s) 187, 209, 371
LweI GCATC 1 cut(s) 91
MaeIII GTNAC 3 cut(s) 175, 239, 316
MboII GAAGA 2 cut(s) 13, 324
MfeI CAATTG 1 cut(s) 321
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 25, 256, 321, 327
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 4 cut(s) 22, 140, 164, 259
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 106
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 200, 215
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 143, 346
NmuCI GTSAC 1 cut(s) 239
NsiI ATGCAT 1 cut(s) 106
PctI GAATGC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 3 cut(s) 199, 202, 361
PspPI GGNCC 1 cut(s) 127
PvuII CAGCTG 2 cut(s) 200, 215
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 3 cut(s) 198, 201, 360
Sau96I GGNCC 1 cut(s) 127
SetI ASST 8 cut(s) 14, 20, 37, 48, 202, 217, 246, 309
SfaNI GCATC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 4 cut(s) 25, 256, 321, 327
TaaI ACNGT 3 cut(s) 189, 226, 254
TasI AATT 4 cut(s) 25, 256, 321, 327
TscAI CASTG 3 cut(s) 192, 257, 369
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 3 cut(s) 197, 200, 359
Tsp45I GTSAC 1 cut(s) 239
TspRI CASTG 3 cut(s) 192, 257, 369
Van91I CCANNNNNTGG 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.