Rorug03G0338600

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010373
Physical Location & Seq
Reverse (-)
40057626 .. 40178441
120816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0338600.1

Sequence Viewer

Length: 1197 bp
ATGGCTAGTGCGCTGGAAACTCTTTGTGGTCAATCATATGGTGCAAAACAATATGACATGCTTGGGGTACATCTTCAGAGATCATGGATAGTGTTGTTTGTCAGCGCATTCTTCCTTGTTCCTATTTGCATCTTTACAACTCCAATCTTAGAGGCCTTAGGACAGGAACAGAATATTGCACAAGTGGCGGGCTATATTTCTCTCTGGGTAATCCCGGTGATTTTCGCCTTTGTTTTATCCTTTACCTGCCAAATGTACTTGCAAGCACAGAGCAAAAATATGATCATAGCTTACTTGTCAGCAATTTCAATTGCAATCCACATCCTCCTTTCATGGCTTTTGACTGTGAAATATCAGCTTGGGATTCCTGGGGCAATGGTGTCCACAATTTTAGCATTTTGGATTCCCAACATTGGTCAACTTTTATTTATTATATGTGGAGGATGCCCACAGACATGGAAAGGCTTCTCGATGTTAGCTTTTAAAGATCTCTGGGATGTCGTCAAGCTTTCTCTGTCTTCTGGTGTTATGCTTTGTCTGGAGCTTTGGTACAATACGGTCTTGGTTCTTTTAACTGGAAGTATGGAAAATGCTGAGGTTTCTATCGATGCTCTAGCTATTTGTCTCAACATCAATGGGTGGGAAATGATGATATCCCTTGGCTTCTTGGCTGCAGCAAGTGTACGAGTGTCAAATGAACTTGGACGAGGTAGCTCAAAAGGGGCGAAGTTCTCAATTGTGGTTATAGTGTTCACATCATTTGCGATCGGTATTGTGTTGTTCTTCATTTTCCTATTCTTGAGGGAACGTCTATCCTACATCTTTACCAATGACGAAGAGGTAGCCAAAGCAGTTGCCGACTTGTCACCTTTATTGGCCTTCTCCATATTGTTGAACAGTGTTCAGCCTGTGCTCTCTGGAGTTGCTCTGGGAGCTGGATGGCAGAGTACTGTAGCATATGTGAACATAGCATGTTATTACCTTATAGGCATTCCCGTTGGAGTTGTGCTTGGTTATGTTGTCAACCTACAAGTCAAAGGTGTTTGGATTGGAATGTTGTTCGGAACATTTGTGCAAACGATTGTACTACTAATACTGACCTACAGAACTGATTGGGATAATCAGGTAACAATAGCTCGTAATCGTGTTAACAAGTGGGCCGTTAAAGATATTGGAGACCCAAGCTCCAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

398

Amino Acids

43.7

Weight (kDa)

6.13

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 1 - 113 6.9e-20 MatE
MatE PF01554 175 - 335 2.1e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23210 AT3G23210 AT4G14410 AT4G14410 AT4G14410
fragaria_vesca FvH4_4g03420
malus_domestica MD13G1212400.v1.1 MD16G1216000.v1.1
prunus_persica Prupe.1G037400_v2.0.a1
pyrus_communis pycom13g18420 pycom16g18070
rosa_chinensis RchiOBHm_Chr4g0392401
rosa_laevigata RLG00000009814
rosa_multiflora Rmu_sc0001800.1_g000017
rosa_roxburghii Rroxscaffold_5G00337580
rosa_rugosa Rorug03G0338600
rosa_samantha Rh4AG042400 Rh4BG037300 Rh4CG045200 Rh4DG039700
rosa_wichuraiana Rw4G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 254
AciI CCGC 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 6 cut(s) 69, 257, 551, 684, 949, 1086
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 2 cut(s) 309, 895
AjnI CCWGG 1 cut(s) 367
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 2 cut(s) 629, 1170
AoxI GGCC 3 cut(s) 153, 876, 1158
ApeKI GCWGC 2 cut(s) 671, 674
Asp700I GAANNNNTTC 1 cut(s) 464
AspLEI GCGC 2 cut(s) 13, 107
AspS9I GGNCC 1 cut(s) 1158
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 229, 858
AxyI CCTNAGG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 915
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 658, 686
BccI CCATC 1 cut(s) 933
BceAI ACGGC 1 cut(s) 1145
BciT130I CCWGG 1 cut(s) 369
BclI TGATCA 1 cut(s) 282
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 629, 1170
BfaI CTAG 2 cut(s) 6, 614
BfmI CTRYAG 3 cut(s) 672, 951, 1102
BfuAI ACCTGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 487
BisI GCNGC 2 cut(s) 672, 675
BlsI GCNGC 2 cut(s) 673, 676
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 2 cut(s) 215, 369
BmgT120I GGNCC 1 cut(s) 1158
BmrFI CCNGG 2 cut(s) 215, 369
BmsI GCATC 3 cut(s) 138, 434, 598
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 2 cut(s) 560, 939
Bpu10I CCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 820
BpuMI CCSGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 1170
BsaJI CCNNGG 2 cut(s) 368, 658
BsaXI ACNNNNNCTCC 3 cut(s) 533, 563, 1169
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 580
Bse21I CCTNAGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 369
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 2 cut(s) 368, 658
BseGI GGATG 4 cut(s) 321, 449, 502, 944
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 1 cut(s) 580
BseXI GCAGC 2 cut(s) 658, 686
Bsh1285I CGRYCG 1 cut(s) 768
BshFI GGCC 3 cut(s) 155, 878, 1160
BshVI ATCGAT 1 cut(s) 606
BsiEI CGRYCG 1 cut(s) 768
BsiHKAI GWGCWC 1 cut(s) 915
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 629, 1170
BsmI GAATGC 2 cut(s) 107, 990
BsnI GGCC 3 cut(s) 155, 878, 1160
Bso31I GGTCTC 1 cut(s) 1170
Bsp1286I GDGCHC 1 cut(s) 915
Bsp143I GATC 4 cut(s) 80, 282, 487, 765
BspACI CCGC 1 cut(s) 188
BspANI GGCC 3 cut(s) 155, 878, 1160
BspCNI CTCAG 1 cut(s) 586
BspDI ATCGAT 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 1170
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 368, 658
BssMI GATC 4 cut(s) 80, 282, 487, 765
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 4 cut(s) 346, 559, 899, 952
Bst6I CTCTTC 1 cut(s) 831
BstC8I GCNNGC 2 cut(s) 190, 264
BstDEI CTNAG 3 cut(s) 148, 157, 594
BstF5I GGATG 4 cut(s) 321, 449, 502, 944
BstHHI GCGC 2 cut(s) 13, 107
BstKTI GATC 4 cut(s) 83, 285, 490, 768
BstMAI GTCTC 2 cut(s) 629, 1170
BstMBI GATC 4 cut(s) 80, 282, 487, 765
BstMCI CGRYCG 1 cut(s) 768
BstMWI GCNNNNNNNGC 2 cut(s) 185, 932
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 2 cut(s) 61, 975
BstSCI CCNGG 2 cut(s) 213, 367
BstSFI CTRYAG 3 cut(s) 672, 951, 1102
BstV1I GCAGC 2 cut(s) 658, 686
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 456
BstYI RGATCY 1 cut(s) 487
Bsu15I ATCGAT 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 157
BsuRI GGCC 3 cut(s) 155, 878, 1160
BsuTUI ATCGAT 1 cut(s) 606
BtsCI GGATG 4 cut(s) 321, 449, 502, 944
BtsIMutI CAGTG 1 cut(s) 904
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 190, 264
CfoI GCGC 2 cut(s) 13, 107
Cfr13I GGNCC 1 cut(s) 1158
ClaI ATCGAT 1 cut(s) 606
Csp6I GTAC 6 cut(s) 68, 256, 550, 683, 948, 1085
CviAII CATG 5 cut(s) 58, 84, 333, 456, 972
CviQI GTAC 6 cut(s) 68, 256, 550, 683, 948, 1085
DdeI CTNAG 3 cut(s) 148, 157, 594
DpnI GATC 4 cut(s) 82, 284, 489, 767
DpnII GATC 4 cut(s) 80, 282, 487, 765
DraI TTTAAA 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 831
EarI CTCTTC 1 cut(s) 831
Eco130I CCWWGG 1 cut(s) 658
Eco147I AGGCCT 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 1170
Eco32I GATATC 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 367
EcoRV GATATC 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 5 cut(s) 61, 87, 336, 459, 975
FatI CATG 5 cut(s) 57, 83, 332, 455, 971
FauI CCCGC 1 cut(s) 181
FauNDI CATATG 2 cut(s) 37, 958
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 672, 675
FokI GGATG 4 cut(s) 308, 456, 509, 951
Fsp4HI GCNGC 2 cut(s) 672, 675
FspBI CTAG 2 cut(s) 6, 614
GlaI GCGC 2 cut(s) 12, 106
GluI GCNGC 2 cut(s) 672, 675
GsuI CTGGAG 2 cut(s) 560, 939
HaeIII GGCC 3 cut(s) 155, 878, 1160
HapII CCGG 1 cut(s) 215
HhaI GCGC 2 cut(s) 13, 107
Hin1II CATG 5 cut(s) 61, 87, 336, 459, 975
Hin6I GCGC 2 cut(s) 11, 105
HinP1I GCGC 2 cut(s) 11, 105
HincII GTYRAC 3 cut(s) 419, 1024, 1150
HindII GTYRAC 3 cut(s) 419, 1024, 1150
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 2 cut(s) 364, 403
HpaI GTTAAC 1 cut(s) 1150
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 229, 858
Hpy166II GTNNAC 7 cut(s) 384, 419, 683, 753, 964, 1024, 1150
Hpy188I TCNGA 2 cut(s) 78, 1064
Hpy188III TCNNGA 4 cut(s) 469, 539, 799, 918
Hpy8I GTNNAC 7 cut(s) 384, 419, 683, 753, 964, 1024, 1150
HpyAV CCTTC 1 cut(s) 889
HpyCH4III ACNGT 4 cut(s) 346, 559, 899, 952
HpyCH4IV ACGT 1 cut(s) 808
HpyCH4V TGCA 7 cut(s) 44, 129, 179, 262, 314, 674, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 932
HpyF3I CTNAG 3 cut(s) 148, 157, 594
HpySE526I ACGT 1 cut(s) 808
Hsp92II CATG 5 cut(s) 61, 87, 336, 459, 975
HspAI GCGC 2 cut(s) 11, 105
Ksp22I TGATCA 1 cut(s) 282
KspAI GTTAAC 1 cut(s) 1150
Kzo9I GATC 4 cut(s) 80, 282, 487, 765
LmnI GCTCC 3 cut(s) 541, 932, 1190
Lsp1109I GCAGC 2 cut(s) 658, 686
LweI GCATC 3 cut(s) 138, 434, 598
MaeI CTAG 2 cut(s) 6, 614
MaeII ACGT 1 cut(s) 808
MaeIII GTNAC 2 cut(s) 864, 1126
MalI GATC 4 cut(s) 82, 284, 489, 767
MboI GATC 4 cut(s) 80, 282, 487, 765
MboII GAAGA 5 cut(s) 65, 103, 510, 775, 848
MfeI CAATTG 2 cut(s) 309, 735
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 915
MluCI AATT 4 cut(s) 303, 309, 387, 735
MmeI TCCRAC 1 cut(s) 979
MnlI CCTC 7 cut(s) 145, 335, 434, 589, 701, 795, 832
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 4 cut(s) 483, 572, 1149, 1164
MslI CAYNNNNRTG 1 cut(s) 454
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 215, 369
MunI CAATTG 2 cut(s) 309, 735
Mva1269I GAATGC 2 cut(s) 107, 990
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 2 cut(s) 185, 932
NciI CCSGG 1 cut(s) 215
NdeI CATATG 2 cut(s) 37, 958
NdeII GATC 4 cut(s) 80, 282, 487, 765
NlaIII CATG 5 cut(s) 61, 87, 336, 459, 975
NmuCI GTSAC 1 cut(s) 864
NspI RCATGY 2 cut(s) 61, 975
PceI AGGCCT 1 cut(s) 155
PctI GAATGC 2 cut(s) 107, 990
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 364, 403
PkrI GCNGC 2 cut(s) 673, 676
Ple19I CGATCG 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspPI GGNCC 1 cut(s) 1158
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 487
PvuI CGATCG 1 cut(s) 768
RsaI GTAC 6 cut(s) 69, 257, 551, 684, 949, 1086
RsaNI GTAC 6 cut(s) 68, 256, 550, 683, 948, 1085
RseI CAYNNNNRTG 1 cut(s) 454
SaqAI TTAA 4 cut(s) 483, 572, 1149, 1164
SatI GCNGC 2 cut(s) 672, 675
Sau3AI GATC 4 cut(s) 80, 282, 487, 765
Sau96I GGNCC 1 cut(s) 1158
ScaI AGTACT 1 cut(s) 949
ScrFI CCNGG 2 cut(s) 215, 369
SduI GDGCHC 1 cut(s) 915
SfaNI GCATC 3 cut(s) 138, 434, 598
SfcI CTRYAG 3 cut(s) 672, 951, 1102
SmiMI CAYNNNNRTG 1 cut(s) 454
SmlI CTYRAG 1 cut(s) 799
SmoI CTYRAG 1 cut(s) 799
Sse9I AATT 4 cut(s) 303, 309, 387, 735
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 1 cut(s) 188
SspI AATATT 1 cut(s) 175
SspMI CTAG 2 cut(s) 6, 614
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 213, 367
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 4 cut(s) 346, 559, 899, 952
TaiI ACGT 1 cut(s) 811
TaqI TCGA 2 cut(s) 470, 606
TasI AATT 4 cut(s) 303, 309, 387, 735
TatI WGTACW 3 cut(s) 255, 947, 1084
TfiI GAWTC 2 cut(s) 364, 403
Tru1I TTAA 4 cut(s) 483, 572, 1149, 1164
Tru9I TTAA 4 cut(s) 483, 572, 1149, 1164
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 1 cut(s) 864
TseI GCWGC 2 cut(s) 671, 674
Tsp45I GTSAC 1 cut(s) 864
TspDTI ATGAA 3 cut(s) 321, 711, 775
TspRI CASTG 1 cut(s) 904
XceI RCATGY 2 cut(s) 61, 975
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 2 cut(s) 6, 614
ZrmI AGTACT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.