Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010373

Physical Location & Seq

Genomic Coordinates Reverse (-)

2595576 .. 2598209

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G037400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTATTCTCTGATGGAGGAATGGATAGAGTATCTTGATTACATCGACGAGACGACCCAGCCCAGCGATTTCCTTTGGCCTAATGACACTCCTTCATTTAGGGAATTCGAATTCTCTGCTGTTGATGTTCCTGCTGCTTTCTCACCGGAAAAAGAGTGCCCTCGCAAAAGGGGACGAACCGATTCTTCTTGCCCTGGGTCTGGAGCGAAGGCTTGCCGTGAGAAGTTGAGGAGGGAGAGATTGAATGACAGGTTTGTGGAGTTGAGCGCTGTTTTAGAACCTGGGAGACCGCCCAAATCTGACAAGCCTGCTATTCTTGATGATGCCATAAGGGTTTTGACCCAGCTGAGAGCTGAAGCTCAGGAGCTCAAAGAAACAAATCAAAAGTTACTTGAAGAAGTAAAAAGTTTAAAGGCAGAGAAGAATGAACTCCGTGAAGAGAAACTTGTACTGAAAGCAGATAAAGAAAGGTTGGAGCAGCAGTTGAAAGGTATGGCAATTTCACCTTCTGGGTTTGTTCCAACCCACCCAGCAGTCCCAGCTGCATATCATCCCGGGGCAAGCAAGATGGCAATGTATCCTAGCTATAGTCTGGTTCCAATGTGGCATTATTTACCTCCATCGGTCCGTGATACATCTCGTGATCATGAACTTCGGCCCCCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

224

Amino Acids

25.4

Weight (kDa)

5.73

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23210 AT3G23210 AT4G14410 AT4G14410 AT4G14410
fragaria_vesca	FvH4_4g03420
malus_domestica	MD13G1212400.v1.1 MD16G1216000.v1.1
prunus_persica	Prupe.1G037400_v2.0.a1
pyrus_communis	pycom13g18420 pycom16g18070
rosa_chinensis	RchiOBHm_Chr4g0392401
rosa_laevigata	RLG00000009814
rosa_multiflora	Rmu_sc0001800.1_g000017
rosa_roxburghii	Rroxscaffold_5G00337580
rosa_rugosa	Rorug03G0338600
rosa_samantha	Rh4AG042400 Rh4BG037300 Rh4CG045200 Rh4DG039700
rosa_wichuraiana	Rw4G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	290
AcsI	RAATTY	2 cut(s)	104, 110
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	450
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	244, 395, 487
AjnI	CCWGG	2 cut(s)	193, 280
AluBI	AGCT	6 cut(s)	346, 353, 359, 367, 542, 585
AluI	AGCT	6 cut(s)	346, 353, 359, 367, 542, 585
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	44, 280
Ama87I	CYCGRG	1 cut(s)	554
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	2 cut(s)	77, 656
ApeKI	GCWGC	4 cut(s)	134, 478, 542, 665
ApoI	RAATTY	2 cut(s)	104, 110
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	625, 657
AsuC2I	CCSGG	2 cut(s)	555, 556
AsuHPI	GGTGA	2 cut(s)	135, 495
AsuII	TTCGAA	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	4 cut(s)	121, 490, 529, 652
BccI	CCATC	3 cut(s)	7, 562, 628
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	2 cut(s)	195, 282
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	555, 556
BcoDI	GTCTC	2 cut(s)	44, 280
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	586
BfoI	RGCGCY	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	4 cut(s)	135, 479, 543, 666
BlsI	GCNGC	4 cut(s)	136, 480, 544, 667
Bme1390I	CCNGG	4 cut(s)	195, 282, 555, 556
Bme18I	GGWCC	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	625, 657
BmiI	GGNNCC	2 cut(s)	597, 659
BmrFI	CCNGG	4 cut(s)	195, 282, 555, 556
BmsI	GCATC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	108
BpuMI	CCSGG	2 cut(s)	555, 556
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	5 cut(s)	193, 194, 281, 554, 555
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	195, 282
BseDI	CCNNGG	5 cut(s)	193, 194, 281, 554, 555
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	338, 374
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	121, 490, 529, 652
BseYI	CCCAGC	5 cut(s)	57, 62, 342, 529, 538
BshFI	GGCC	2 cut(s)	79, 658
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	2 cut(s)	146, 555
BslFI	GGGAC	2 cut(s)	186, 521
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	44, 280
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	186, 521
BsnI	GGCC	2 cut(s)	79, 658
Bso31I	GGTCTC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	161, 369
Bsp143I	GATC	1 cut(s)	643
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	79, 658
BspCNI	CTCAG	2 cut(s)	339, 373
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	597, 659
BspT104I	TTCGAA	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	579
BssECI	CCNNGG	5 cut(s)	193, 194, 281, 554, 555
BssMI	GATC	1 cut(s)	643
BssSI	CACGAG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	195, 282
Bst6I	CTCTTC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	214, 309, 562
BstDEI	CTNAG	3 cut(s)	347, 360, 669
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	646
BstMAI	GTCTC	2 cut(s)	44, 280
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	2 cut(s)	195, 282
BstSCI	CCNGG	4 cut(s)	193, 280, 553, 554
BstSFI	CTRYAG	1 cut(s)	586
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	121, 490, 529, 652
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	79, 658
BtsCI	GGATG	1 cut(s)	550
Cac8I	GCNNGC	3 cut(s)	214, 309, 562
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	625, 657
Cfr9I	CCCGGG	1 cut(s)	554
CpoI	CGGWCCG	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	449
CspI	CGGWCCG	1 cut(s)	625
CviAII	CATG	1 cut(s)	647
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	3 cut(s)	347, 360, 669
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
DraI	TTTAAA	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	625
Eco47III	AGCGCT	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	367
EcoRI	GAATTC	2 cut(s)	104, 110
EcoRII	CCWGG	2 cut(s)	193, 280
EcoT38I	GRGCYC	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	1 cut(s)	650
FaiI	YATR	5 cut(s)	329, 494, 547, 588, 648
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	186, 521
FatI	CATG	1 cut(s)	646
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	135, 479, 543, 666
FokI	GGATG	1 cut(s)	537
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	4 cut(s)	135, 479, 543, 666
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	4 cut(s)	135, 479, 543, 666
GsaI	CCCAGC	5 cut(s)	61, 66, 346, 533, 542
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	79, 658
HapII	CCGG	2 cut(s)	146, 555
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	650
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	146, 555
HphI	GGTGA	2 cut(s)	135, 495
Hpy188I	TCNGA	2 cut(s)	12, 301
Hpy188III	TCNNGA	6 cut(s)	35, 201, 317, 362, 641, 647
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	102, 202, 516
HpyCH4V	TGCA	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	3 cut(s)	347, 360, 669
Hsp92II	CATG	1 cut(s)	650
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	1 cut(s)	643
LmnI	GCTCC	3 cut(s)	203, 364, 475
Lsp1109I	GCAGC	4 cut(s)	121, 490, 529, 652
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	4 cut(s)	177, 407, 433, 449
MhlI	GDGCHC	2 cut(s)	161, 369
MluCI	AATT	3 cut(s)	104, 110, 498
MmeI	TCCRAC	2 cut(s)	453, 545
MnlI	CCTC	5 cut(s)	10, 171, 222, 225, 627
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	346, 542
MspI	CCGG	2 cut(s)	146, 555
MspR9I	CCNGG	4 cut(s)	195, 282, 555, 556
MvaI	CCWGG	2 cut(s)	195, 282
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	2 cut(s)	555, 556
NdeII	GATC	1 cut(s)	643
NlaIII	CATG	1 cut(s)	650
NlaIV	GGNNCC	2 cut(s)	597, 659
NspV	TTCGAA	1 cut(s)	108
PagI	TCATGA	1 cut(s)	646
PasI	CCCWGGG	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	136, 480, 544, 667
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	193, 280
PspFI	CCCAGC	5 cut(s)	57, 62, 342, 529, 538
PspGI	CCWGG	2 cut(s)	193, 280
PspN4I	GGNNCC	2 cut(s)	597, 659
PspPI	GGNCC	2 cut(s)	625, 657
PvuII	CAGCTG	2 cut(s)	346, 542
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
Rsr2I	CGGWCCG	1 cut(s)	625
RsrII	CGGWCCG	1 cut(s)	625
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	4 cut(s)	135, 479, 543, 666
Sau3AI	GATC	1 cut(s)	643
Sau96I	GGNCC	2 cut(s)	625, 657
ScrFI	CCNGG	4 cut(s)	195, 282, 555, 556
SduI	GDGCHC	2 cut(s)	161, 369
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	1 cut(s)	625
SmaI	CCCGGG	1 cut(s)	556
Sse9I	AATT	3 cut(s)	104, 110, 498
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	4 cut(s)	193, 280, 553, 554
TaqI	TCGA	2 cut(s)	45, 108
TaqII	GACCGA	1 cut(s)	613
TasI	AATT	3 cut(s)	104, 110, 498
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseI	GCWGC	4 cut(s)	134, 478, 542, 665
TspDTI	ATGAA	3 cut(s)	84, 441, 663
TspGWI	ACGGA	2 cut(s)	422, 617
TspMI	CCCGGG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	2 cut(s)	104, 110
XmaI	CCCGGG	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.