Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010373

Physical Location & Seq

Genomic Coordinates Forward (+)

8299397 .. 8301667

Gene Structure 2271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTATCCTTCTCTCGACGATGATTTCGTCTCTGATTTGTTTTGCTTCGATCAAAGCAATGGAGCAGAACTTGATGATTACACACAGTTTGGTGTAAATTTGCAGACTGATCAAGAGGATACCTTTCCAGATTTTGTGTCATATGGTGTGAATTTGCAGCAGGAGCCAGATGAAGTCTTTAGTATTGGAGCTTCTCAATTGGATTTGTCCTCGTATAATGGAGTTTTGTCGCTAGAGCCAGAACAGGTGGGGCAACAAGATTGTGAAGTTGTGCAGGAAGAAGAAGTAGAGATCAATTCTGGTTCATCTGGTGGAGCTGTTAAGGAAGAACAGGAACATTTAGATGACGATTGCTCCAGAAAGCGGGCAAGGACTGGATCGTGTAGCAGAGGAGGAGGAACTAAAGCGTGTCGTGAAAGGTTGAGGAGGGAGAAGCTAAATGAGAGGTTTATGGATTTGAGCTCGGTTTTGGAGCCTGGGAGGACTCCTAAGACTGATAAACCGGCTATACTCGATGATGCAATCCGTATATTGAATCAACTTAGAGATGAAGCTCTTAAGCTTGAAGAAACTAACCAGAAGCTTTTAGAGGAGATCAAGAGTCTCAAGGCGGAGAAGAACGAGCTGAGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAAGAGAAGACAGAACAACAGTTAAAGTCTATGACGGCTCCATCTTCAGGGTTCATACCTCATATTCCAGCTGCATTTAACCACAACAAAATGGCTGTTTATCCAAGTTACGGTTACATGCCAATGTGGCATTATATGCCTCAATCCGTTCGTGACACATCTCGTGATCAAGAACTCAGGCCTCCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

283

Amino Acids

32.0

Weight (kDa)

4.62

Isoelectric Point (pI)

62.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	128 - 176	4e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23210 AT3G23210 AT4G14410 AT4G14410 AT4G14410
fragaria_vesca	FvH4_4g03420
malus_domestica	MD13G1212400.v1.1 MD16G1216000.v1.1
prunus_persica	Prupe.1G037400_v2.0.a1
pyrus_communis	pycom13g18420 pycom16g18070
rosa_chinensis	RchiOBHm_Chr4g0392401
rosa_laevigata	RLG00000009814
rosa_multiflora	Rmu_sc0001800.1_g000017
rosa_roxburghii	Rroxscaffold_5G00337580
rosa_rugosa	Rorug03G0338600
rosa_samantha	Rh4AG042400 Rh4BG037300 Rh4CG045200 Rh4DG039700
rosa_wichuraiana	Rw4G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	364, 611, 653
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	97, 151
AcuI	CTGAAG	1 cut(s)	687
AfiI	CCNNNNNNNGG	3 cut(s)	363, 704, 767
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	535, 566, 649
AjnI	CCWGG	1 cut(s)	475
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	34, 608
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	836
ApeKI	GCWGC	3 cut(s)	157, 728, 845
ApoI	RAATTY	2 cut(s)	97, 151
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
BanII	GRGCYC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	175, 207
BauI	CACGAG	1 cut(s)	819
BbsI	GAAGAC	1 cut(s)	671
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	3 cut(s)	169, 715, 832
BccI	CCATC	1 cut(s)	706
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	1 cut(s)	477
BciVI	GTATCC	2 cut(s)	15, 112
BclI	TGATCA	2 cut(s)	109, 823
BcoDI	GTCTC	2 cut(s)	34, 608
BfaI	CTAG	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	557
BfuI	GTATCC	2 cut(s)	15, 112
BglI	GCCNNNNNGGC	1 cut(s)	784
BisI	GCNGC	3 cut(s)	158, 729, 846
BlsI	GCNGC	3 cut(s)	159, 730, 847
Bme1390I	CCNGG	1 cut(s)	477
BmiI	GGNNCC	3 cut(s)	165, 474, 696
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	671
BpmI	CTGGAG	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	626
BpuEI	CTTGAG	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 704, 767
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	476
BseLI	CCNNNNNNNGG	3 cut(s)	363, 704, 767
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	617, 847
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	4 cut(s)	405, 408, 439, 605
BseXI	GCAGC	3 cut(s)	169, 715, 832
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	838
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	363, 704, 767
BsmAI	GTCTC	2 cut(s)	34, 608
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	838
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	6 cut(s)	49, 109, 291, 377, 594, 823
BspACI	CCGC	3 cut(s)	364, 611, 653
BspANI	GGCC	1 cut(s)	838
BspCNI	CTCAG	2 cut(s)	618, 846
BspLI	GGNNCC	3 cut(s)	165, 474, 696
BspPI	GGATC	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	6 cut(s)	49, 109, 291, 377, 594, 823
BssSI	CACGAG	1 cut(s)	819
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	87, 678, 770
BstAFI	CTTAAG	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	4 cut(s)	489, 542, 626, 833
BstKTI	GATC	6 cut(s)	52, 112, 294, 380, 597, 826
BstMAI	GTCTC	2 cut(s)	34, 608
BstMBI	GATC	6 cut(s)	49, 109, 291, 377, 594, 823
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 784, 793
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	169, 715, 832
BstV2I	GAAGAC	1 cut(s)	671
BsuI	GTATCC	2 cut(s)	15, 112
BsuRI	GGCC	1 cut(s)	838
Cac8I	GCNNGC	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	502
CviAII	CATG	1 cut(s)	775
DdeI	CTNAG	4 cut(s)	489, 542, 626, 833
DpnI	GATC	6 cut(s)	51, 111, 293, 379, 596, 825
DpnII	GATC	6 cut(s)	49, 109, 291, 377, 594, 823
EciI	GGCGGA	2 cut(s)	626, 668
Ecl136II	GAGCTC	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	838
Eco24I	GRGCYC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	687
EcoICRI	GAGCTC	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	464
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	778
FatI	CATG	1 cut(s)	774
FauI	CCCGC	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	2 cut(s)	109, 823
Fnu4HI	GCNGC	3 cut(s)	158, 729, 846
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	158, 729, 846
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	3 cut(s)	158, 729, 846
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	838
HapII	CCGG	1 cut(s)	503
Hin1II	CATG	1 cut(s)	778
HindIII	AAGCTT	2 cut(s)	560, 581
HinfI	GANTC	3 cut(s)	484, 535, 601
HpaII	CCGG	1 cut(s)	503
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	9 cut(s)	14, 113, 128, 357, 413, 598, 809, 821, 827
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	18, 643
HpyCH4III	ACNGT	3 cut(s)	87, 678, 770
HpyCH4V	TGCA	5 cut(s)	103, 157, 274, 521, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 784, 793
HpyF3I	CTNAG	4 cut(s)	489, 542, 626, 833
Hsp92II	CATG	1 cut(s)	778
Ksp22I	TGATCA	2 cut(s)	109, 823
Kzo9I	GATC	6 cut(s)	49, 109, 291, 377, 594, 823
LmnI	GCTCC	7 cut(s)	62, 163, 188, 314, 359, 472, 700
Lsp1109I	GCAGC	3 cut(s)	169, 715, 832
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	3 cut(s)	764, 770, 809
MalI	GATC	6 cut(s)	51, 111, 293, 379, 596, 825
MboI	GATC	6 cut(s)	49, 109, 291, 377, 594, 823
MboII	GAAGA	7 cut(s)	290, 293, 338, 578, 628, 676, 693
MfeI	CAATTG	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	4 cut(s)	97, 151, 197, 295
MlyI	GAGTC	2 cut(s)	478, 610
MseI	TTAA	5 cut(s)	321, 558, 680, 735, 850
MslI	CAYNNNNRTG	2 cut(s)	342, 779
MspA1I	CMGCKG	1 cut(s)	728
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	163, 784, 793
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	6 cut(s)	49, 109, 291, 377, 594, 823
NlaIII	CATG	1 cut(s)	778
NlaIV	GGNNCC	3 cut(s)	165, 474, 696
NmuCI	GTSAC	1 cut(s)	809
NspI	RCATGY	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	838
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	159, 730, 847
PleI	GAGTC	2 cut(s)	478, 609
PpsI	GAGTC	2 cut(s)	478, 609
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	165, 474, 696
PvuII	CAGCTG	1 cut(s)	728
RseI	CAYNNNNRTG	2 cut(s)	342, 779
SacI	GAGCTC	1 cut(s)	464
SaqAI	TTAA	5 cut(s)	321, 558, 680, 735, 850
SatI	GCNGC	3 cut(s)	158, 729, 846
Sau3AI	GATC	6 cut(s)	49, 109, 291, 377, 594, 823
SchI	GAGTC	2 cut(s)	478, 610
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	342, 779
SmlI	CTYRAG	2 cut(s)	557, 605
SmoI	CTYRAG	2 cut(s)	557, 605
Sse9I	AATT	4 cut(s)	97, 151, 197, 295
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	3 cut(s)	364, 611, 653
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	87, 678, 770
TaqI	TCGA	3 cut(s)	15, 48, 513
TasI	AATT	4 cut(s)	97, 151, 197, 295
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	5 cut(s)	321, 558, 680, 735, 850
Tru9I	TTAA	5 cut(s)	321, 558, 680, 735, 850
TseFI	GTSAC	1 cut(s)	809
TseI	GCWGC	3 cut(s)	157, 728, 845
Tsp45I	GTSAC	1 cut(s)	809
TspDTI	ATGAA	4 cut(s)	186, 294, 564, 700
TspGWI	ACGGA	2 cut(s)	515, 793
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	2 cut(s)	97, 151
XceI	RCATGY	1 cut(s)	778
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.