Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010373

Physical Location & Seq

Genomic Coordinates Reverse (-)

8283003 .. 8285081

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTATCCATCAATCGAAGACGATGATGATCTTCTCGCTGCTCTTTGTTTTGATCAAAGCAATGGAGTAGAAGATCCTTATGGATATATGCAAACAAATGAAGATAACATATTTCAGGATTTTGGGTCTTGTGGTGTGAATCTGATGCAGCCACAACAAGAACAATTTGATTCTTTTAATGGAAATCTTGAGCAAGTTTGTAGTAGCTTTAGAGGAGGAAACAATGGAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTGGAGTTTTGCAGCAAGAGACACATCAAGTCTGTGGCTTTAGAGGACAAAACGACGATTCTGCAGTGCCTCATTTGCAGCAGCAACAAGGACAGGTGTTTAGTGGTGTAGTGGAAATCAATTCTTCGTCATCTGTTGGAGCTGTTAAGGAAGAGTTTGAGGAAGAATGTTCGGGGAAGAGGAGACGAACTGGATCATGTAGCAAGCCAGGAACCAAAGCCTGTCGCGAGAAACTAAGAAGGGAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTAGAGCCTGGCAGGACTCCAAAGACGGATAAATCAGCTATACTCGACGATGCAATCCGGGTTGTGAATCAGCTTAGAGGTGAAGCTCATGAGCTTCAAGAAACCAACCAAAAGCTTCTAGAAGAGATCAAGAGTCTAAAGGCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGATGGAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATCCAGCAGCTTTCCATTCCCATAAGATGGCGGTGGCTTACCCTTACGGCTACTATCCTCCAAACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCTCAAAAATCTTCCTCCTGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

320

Amino Acids

35.58

Weight (kDa)

5.02

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	137 - 185	4.9e-09	Helix-loop-helix DNA-binding domain
bHLH_IRO3	PF23177	138 - 201	3.5e-06	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23210 AT3G23210 AT4G14410 AT4G14410 AT4G14410
fragaria_vesca	FvH4_4g03420
malus_domestica	MD13G1212400.v1.1 MD16G1216000.v1.1
prunus_persica	Prupe.1G037400_v2.0.a1
pyrus_communis	pycom13g18420 pycom16g18070
rosa_chinensis	RchiOBHm_Chr4g0392401
rosa_laevigata	RLG00000009814
rosa_multiflora	Rmu_sc0001800.1_g000017
rosa_roxburghii	Rroxscaffold_5G00337580
rosa_rugosa	Rorug03G0338600
rosa_samantha	Rh4AG042400 Rh4BG037300 Rh4CG045200 Rh4DG039700
rosa_wichuraiana	Rw4G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	847
AccII	CGCG	1 cut(s)	510
AciI	CCGC	3 cut(s)	707, 749, 851
AclWI	GGATC	3 cut(s)	68, 259, 484
AfiI	CCNNNNNNNGG	2 cut(s)	800, 847
AgsI	TTSAA	2 cut(s)	662, 745
AjnI	CCWGG	3 cut(s)	490, 571, 799
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	3 cut(s)	296, 460, 933
AlwI	GGATC	3 cut(s)	68, 259, 484
ApeKI	GCWGC	7 cut(s)	38, 148, 272, 295, 361, 364, 827
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	3 cut(s)	656, 789, 891
BanII	GRGCYC	1 cut(s)	560
BauI	CACGAG	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	7 cut(s)	25, 160, 259, 307, 373, 376, 839
BccI	CCATC	4 cut(s)	16, 757, 802, 841
BceAI	ACGGC	1 cut(s)	883
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	3 cut(s)	492, 573, 801
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	3 cut(s)	296, 460, 933
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	7 cut(s)	39, 149, 273, 296, 362, 365, 828
BlsI	GCNGC	7 cut(s)	40, 150, 274, 297, 363, 366, 829
Bme1390I	CCNGG	4 cut(s)	492, 573, 623, 801
BmiI	GGNNCC	2 cut(s)	496, 792
BmrFI	CCNGG	4 cut(s)	492, 573, 623, 801
BmsI	GCATC	4 cut(s)	135, 284, 604, 829
BpiI	GAAGAC	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	209, 574
BpuMI	CCSGG	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	800, 847
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	3 cut(s)	492, 573, 801
BseGI	GGATG	1 cut(s)	820
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	800, 847
BseMI	GCAATG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	2 cut(s)	228, 478
BseXI	GCAGC	7 cut(s)	25, 160, 259, 307, 373, 376, 839
BseYI	CCCAGC	1 cut(s)	816
Bsh1236I	CGCG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	800, 847
BsmAI	GTCTC	3 cut(s)	296, 460, 933
BsmBI	CGTCTC	2 cut(s)	460, 933
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	7 cut(s)	28, 52, 73, 251, 476, 690, 934
Bsp68I	TCGCGA	1 cut(s)	510
BspACI	CCGC	3 cut(s)	707, 749, 851
BspFNI	CGCG	1 cut(s)	510
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	2 cut(s)	496, 792
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	3 cut(s)	68, 259, 484
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	478
BssMI	GATC	7 cut(s)	28, 52, 73, 251, 476, 690, 934
BssSI	CACGAG	1 cut(s)	930
Bst2BI	CACGAG	1 cut(s)	930
Bst2UI	CCWGG	3 cut(s)	492, 573, 801
Bst4CI	ACNGT	2 cut(s)	774, 920
Bst6I	CTCTTC	3 cut(s)	429, 455, 681
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	2 cut(s)	518, 638
BstEII	GGTNACC	1 cut(s)	897
BstF5I	GGATG	1 cut(s)	820
BstFNI	CGCG	1 cut(s)	510
BstKTI	GATC	7 cut(s)	31, 55, 76, 254, 479, 693, 937
BstMAI	GTCTC	3 cut(s)	296, 460, 933
BstMBI	GATC	7 cut(s)	28, 52, 73, 251, 476, 690, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 817
BstNI	CCWGG	3 cut(s)	492, 573, 801
BstNSI	RCATGY	1 cut(s)	889
BstPI	GGTNACC	1 cut(s)	897
BstSCI	CCNGG	4 cut(s)	490, 571, 621, 799
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	7 cut(s)	25, 160, 259, 307, 373, 376, 839
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
BtuMI	TCGCGA	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	488
CciI	TCATGA	1 cut(s)	652
CsiI	ACCWGGT	1 cut(s)	799
CviAII	CATG	5 cut(s)	480, 547, 653, 808, 886
DdeI	CTNAG	2 cut(s)	518, 638
DpnI	GATC	7 cut(s)	30, 54, 75, 253, 478, 692, 936
DpnII	GATC	7 cut(s)	28, 52, 73, 251, 476, 690, 934
Eam1104I	CTCTTC	3 cut(s)	429, 455, 681
EarI	CTCTTC	3 cut(s)	429, 455, 681
EciI	GGCGGA	2 cut(s)	722, 764
Ecl136II	GAGCTC	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	558
Eco91I	GGTNACC	1 cut(s)	897
EcoICRI	GAGCTC	1 cut(s)	558
EcoO65I	GGTNACC	1 cut(s)	897
EcoRII	CCWGG	3 cut(s)	490, 571, 799
EcoT38I	GRGCYC	1 cut(s)	560
Esp3I	CGTCTC	2 cut(s)	460, 933
FaeI	CATG	5 cut(s)	483, 550, 656, 811, 889
FatI	CATG	5 cut(s)	479, 546, 652, 807, 885
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	7 cut(s)	39, 149, 273, 296, 362, 365, 828
FokI	GGATG	1 cut(s)	807
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	7 cut(s)	39, 149, 273, 296, 362, 365, 828
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	7 cut(s)	39, 149, 273, 296, 362, 365, 828
GsaI	CCCAGC	1 cut(s)	820
HapII	CCGG	1 cut(s)	622
Hin1II	CATG	5 cut(s)	483, 550, 656, 811, 889
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	6 cut(s)	139, 170, 341, 580, 631, 697
HpaII	CCGG	1 cut(s)	622
HphI	GGTGA	3 cut(s)	656, 789, 891
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	8 cut(s)	116, 188, 509, 653, 662, 683, 694, 932
Hpy99I	CGWCG	2 cut(s)	341, 614
HpyAV	CCTTC	3 cut(s)	516, 739, 748
HpyCH4III	ACNGT	2 cut(s)	774, 920
HpyCH4IV	ACGT	1 cut(s)	926
HpyCH4V	TGCA	7 cut(s)	91, 148, 275, 295, 347, 361, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 817
HpyF3I	CTNAG	2 cut(s)	518, 638
HpySE526I	ACGT	1 cut(s)	926
Hsp92II	CATG	5 cut(s)	483, 550, 656, 811, 889
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	7 cut(s)	28, 52, 73, 251, 476, 690, 934
LmnI	GCTCC	2 cut(s)	422, 766
Lsp1109I	GCAGC	7 cut(s)	25, 160, 259, 307, 373, 376, 839
LweI	GCATC	4 cut(s)	135, 284, 604, 829
MabI	ACCWGGT	1 cut(s)	799
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	926
MaeIII	GTNAC	1 cut(s)	897
MalI	GATC	7 cut(s)	30, 54, 75, 253, 478, 692, 936
MboI	GATC	7 cut(s)	28, 52, 73, 251, 476, 690, 934
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	3 cut(s)	164, 260, 403
MlyI	GAGTC	2 cut(s)	574, 706
MmeI	TCCRAC	1 cut(s)	400
MseI	TTAA	4 cut(s)	177, 429, 776, 961
MslI	CAYNNNNRTG	1 cut(s)	890
MspI	CCGG	1 cut(s)	622
MspR9I	CCNGG	4 cut(s)	492, 573, 623, 801
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	3 cut(s)	492, 573, 801
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	358, 817
NciI	CCSGG	1 cut(s)	623
NdeII	GATC	7 cut(s)	28, 52, 73, 251, 476, 690, 934
NlaIII	CATG	5 cut(s)	483, 550, 656, 811, 889
NlaIV	GGNNCC	2 cut(s)	496, 792
NmuCI	GTSAC	1 cut(s)	897
NruI	TCGCGA	1 cut(s)	510
NspI	RCATGY	1 cut(s)	889
PagI	TCATGA	1 cut(s)	652
PfeI	GAWTC	4 cut(s)	139, 170, 341, 631
PflMI	CCANNNNNTGG	1 cut(s)	847
PkrI	GCNGC	7 cut(s)	40, 150, 274, 297, 363, 366, 829
PleI	GAGTC	2 cut(s)	574, 705
PpsI	GAGTC	2 cut(s)	574, 705
Psp124BI	GAGCTC	1 cut(s)	560
Psp6I	CCWGG	3 cut(s)	490, 571, 799
PspEI	GGTNACC	1 cut(s)	897
PspFI	CCCAGC	1 cut(s)	816
PspGI	CCWGG	3 cut(s)	490, 571, 799
PspN4I	GGNNCC	2 cut(s)	496, 792
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	73
RruI	TCGCGA	1 cut(s)	510
RseI	CAYNNNNRTG	1 cut(s)	890
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	4 cut(s)	177, 429, 776, 961
SatI	GCNGC	7 cut(s)	39, 149, 273, 296, 362, 365, 828
Sau3AI	GATC	7 cut(s)	28, 52, 73, 251, 476, 690, 934
SchI	GAGTC	2 cut(s)	574, 706
ScrFI	CCNGG	4 cut(s)	492, 573, 623, 801
SduI	GDGCHC	1 cut(s)	560
SexAI	ACCWGGT	1 cut(s)	799
SfaNI	GCATC	4 cut(s)	135, 284, 604, 829
SfcI	CTRYAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	890
SmlI	CTYRAG	2 cut(s)	188, 553
SmoI	CTYRAG	2 cut(s)	188, 553
Sse9I	AATT	3 cut(s)	164, 260, 403
SsiI	CCGC	3 cut(s)	707, 749, 851
SspMI	CTAG	1 cut(s)	683
SstI	GAGCTC	1 cut(s)	560
StyD4I	CCNGG	4 cut(s)	490, 571, 621, 799
TaaI	ACNGT	2 cut(s)	774, 920
TaiI	ACGT	1 cut(s)	929
TaqI	TCGA	2 cut(s)	15, 609
TasI	AATT	3 cut(s)	164, 260, 403
TfiI	GAWTC	4 cut(s)	139, 170, 341, 631
Tru1I	TTAA	4 cut(s)	177, 429, 776, 961
Tru9I	TTAA	4 cut(s)	177, 429, 776, 961
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	897
TseI	GCWGC	7 cut(s)	38, 148, 272, 295, 361, 364, 827
Tsp45I	GTSAC	1 cut(s)	897
TspDTI	ATGAA	3 cut(s)	114, 535, 796
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	847
XbaI	TCTAGA	1 cut(s)	682
XceI	RCATGY	1 cut(s)	889
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.