Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010373

Physical Location & Seq

Genomic Coordinates Reverse (-)

14523752 .. 14525557

Gene Structure 1806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGGGAATGGATAGAGTATCTTGATTACATCGACGAAACCCAACCCACCGATTTCCTTTGGCCCAATGACACTCCTTTCGGCGATTTCGAATTCTCCGCCGTCGATGTTCCGGCTGCCGCCGCTTCCTCAGCCTCACTGTCACAGGAAAAAGAGTGCCCCCGCAAGAGGGGACGGACGGATTCATGCTCTGGAGGATCAGGGGCAAAAGCTTGCCGTGAGAAATTGAGGAGGGAGAGATTGAATGACAGGTTTGTGGATTTGAGCGGTGTTTTGGAACCCGGGAGGCCGCCGAAGACGGACAAAGCTGCTATACTTGATGATGCCATAAGGGTTTTGAACCAGCTTAGAGCTGAAGCTCAGGAGCTCACAGAAACAAATCAAAAGTTAGTTGAAGAAGTTAAAAGTTTAAAGGCGGAGAAGAATGAACTTCGTGAAGAAAAACTTGTCCTGAAAGCAGATAAAGAACGGCTGGAACAGCAGTTGAAAGGTATGTCAATTTCACCTTCTGGGTTTGTTCCAACCCACCCAGCAGTACCACCTGCATATCATCCTGGGGCAAACAAGATGGCTGTCTATCCTAGCTATAGTCTGGTCCCTATGTGGCACTATATACCTCCATTGGCCCGTGATACATCTCGTGATCACGAACTTAGGCCCCCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

224

Amino Acids

24.94

Weight (kDa)

5.53

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23210 AT3G23210 AT4G14410 AT4G14410 AT4G14410
fragaria_vesca	FvH4_4g03420
malus_domestica	MD13G1212400.v1.1 MD16G1216000.v1.1
prunus_persica	Prupe.1G037400_v2.0.a1
pyrus_communis	pycom13g18420 pycom16g18070
rosa_chinensis	RchiOBHm_Chr4g0392401
rosa_laevigata	RLG00000009814
rosa_multiflora	Rmu_sc0001800.1_g000017
rosa_roxburghii	Rroxscaffold_5G00337580
rosa_rugosa	Rorug03G0338600
rosa_samantha	Rh4AG042400 Rh4BG037300 Rh4CG045200 Rh4DG039700
rosa_wichuraiana	Rw4G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	550
Acc36I	ACCTGC	1 cut(s)	550
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	7 cut(s)	99, 120, 123, 163, 267, 290, 416
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	2 cut(s)	168, 169
AgsI	TTSAA	4 cut(s)	244, 340, 395, 487
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	7 cut(s)	212, 308, 346, 353, 359, 367, 585
AluI	AGCT	7 cut(s)	212, 308, 346, 353, 359, 367, 585
Alw21I	GWGCWC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	4 cut(s)	62, 287, 624, 656
ApeKI	GCWGC	3 cut(s)	116, 308, 665
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspS9I	GGNCC	4 cut(s)	63, 595, 625, 657
AsuC2I	CCSGG	2 cut(s)	282, 283
AsuHPI	GGTGA	1 cut(s)	495
AsuII	TTCGAA	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	595
BaeGI	GKGCMC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	103, 295, 652
BccI	CCATC	1 cut(s)	562
BceAI	ACGGC	3 cut(s)	86, 201, 485
BciT130I	CCWGG	1 cut(s)	555
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	282, 283
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	550
BisI	GCNGC	6 cut(s)	117, 120, 123, 290, 309, 666
BlsI	GCNGC	6 cut(s)	118, 121, 124, 291, 310, 667
Bme1390I	CCNGG	3 cut(s)	282, 283, 555
Bme18I	GGWCC	1 cut(s)	595
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	4 cut(s)	63, 595, 625, 657
BmiI	GGNNCC	3 cut(s)	279, 597, 659
BmrFI	CCNGG	3 cut(s)	282, 283, 555
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	2 cut(s)	130, 360
Bpu14I	TTCGAA	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	282, 283
BsaJI	CCNNGG	2 cut(s)	281, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 169
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	281, 554
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	168, 169
BseMII	CTCAG	2 cut(s)	144, 374
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	103, 295, 652
BseYI	CCCAGC	1 cut(s)	529
BshFI	GGCC	4 cut(s)	64, 289, 626, 658
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	113, 282
BslFI	GGGAC	2 cut(s)	186, 581
BslI	CCNNNNNNNGG	2 cut(s)	168, 169
BsmFI	GGGAC	2 cut(s)	186, 581
BsnI	GGCC	4 cut(s)	64, 289, 626, 658
BsoBI	CYCGRG	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	161, 369
Bsp143I	GATC	2 cut(s)	197, 643
BspACI	CCGC	7 cut(s)	99, 120, 123, 163, 267, 290, 416
BspANI	GGCC	4 cut(s)	64, 289, 626, 658
BspCNI	CTCAG	2 cut(s)	143, 373
BspLI	GGNNCC	3 cut(s)	279, 597, 659
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	267
BssECI	CCNNGG	2 cut(s)	281, 554
BssMI	GATC	2 cut(s)	197, 643
BssSI	CACGAG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	5 cut(s)	130, 347, 360, 653, 669
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	2 cut(s)	200, 646
BstMBI	GATC	2 cut(s)	197, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 478
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	3 cut(s)	280, 281, 553
BstSFI	CTRYAG	1 cut(s)	586
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	3 cut(s)	103, 295, 652
BstV2I	GAAGAC	1 cut(s)	302
BsuRI	GGCC	4 cut(s)	64, 289, 626, 658
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	4 cut(s)	63, 595, 625, 657
Cfr9I	CCCGGG	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	1 cut(s)	186
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	5 cut(s)	130, 347, 360, 653, 669
DpnI	GATC	2 cut(s)	199, 645
DpnII	GATC	2 cut(s)	197, 643
DraI	TTTAAA	1 cut(s)	411
EciI	GGCGGA	2 cut(s)	88, 431
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	595
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	657
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	1 cut(s)	189
FaiI	YATR	9 cut(s)	187, 314, 329, 494, 547, 588, 602, 612, 614
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	186, 581
FatI	CATG	1 cut(s)	185
FauI	CCCGC	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	6 cut(s)	117, 120, 123, 290, 309, 666
FokI	GGATG	1 cut(s)	537
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	6 cut(s)	117, 120, 123, 290, 309, 666
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	6 cut(s)	117, 120, 123, 290, 309, 666
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	4 cut(s)	64, 289, 626, 658
HapII	CCGG	2 cut(s)	113, 282
Hin1II	CATG	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	113, 282
HphI	GGTGA	1 cut(s)	495
Hpy188III	TCNNGA	7 cut(s)	23, 192, 362, 434, 451, 641, 647
Hpy99I	CGWCG	2 cut(s)	38, 107
HpyAV	CCTTC	1 cut(s)	516
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 478
HpyF3I	CTNAG	5 cut(s)	130, 347, 360, 653, 669
Hsp92II	CATG	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	197, 643
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	3 cut(s)	103, 295, 652
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	2 cut(s)	199, 645
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	197, 643
MboII	GAAGA	4 cut(s)	307, 407, 433, 449
MhlI	GDGCHC	2 cut(s)	161, 369
MluCI	AATT	3 cut(s)	92, 224, 498
MmeI	TCCRAC	1 cut(s)	545
MnlI	CCTC	8 cut(s)	139, 145, 162, 188, 222, 225, 279, 627
MseI	TTAA	2 cut(s)	402, 410
MspI	CCGG	2 cut(s)	113, 282
MspR9I	CCNGG	3 cut(s)	282, 283, 555
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 478
NciI	CCSGG	2 cut(s)	282, 283
NdeII	GATC	2 cut(s)	197, 643
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	3 cut(s)	279, 597, 659
NmuCI	GTSAC	1 cut(s)	141
NspV	TTCGAA	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	6 cut(s)	118, 121, 124, 291, 310, 667
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	553
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	3 cut(s)	279, 597, 659
PspPI	GGNCC	4 cut(s)	63, 595, 625, 657
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	402, 410
SatI	GCNGC	6 cut(s)	117, 120, 123, 290, 309, 666
Sau3AI	GATC	2 cut(s)	197, 643
Sau96I	GGNCC	4 cut(s)	63, 595, 625, 657
ScrFI	CCNGG	3 cut(s)	282, 283, 555
SduI	GDGCHC	2 cut(s)	161, 369
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	595
SmaI	CCCGGG	1 cut(s)	283
Sse9I	AATT	3 cut(s)	92, 224, 498
SsiI	CCGC	7 cut(s)	99, 120, 123, 163, 267, 290, 416
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	280, 281, 553
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	33, 90, 105
TasI	AATT	3 cut(s)	92, 224, 498
TauI	GCSGC	3 cut(s)	122, 125, 292
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	402, 410
Tru9I	TTAA	2 cut(s)	402, 410
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	3 cut(s)	116, 308, 665
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	174, 441
TspGWI	ACGGA	3 cut(s)	190, 194, 314
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	1 cut(s)	92
XmaI	CCCGGG	1 cut(s)	281
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.