Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010373

Physical Location & Seq

Genomic Coordinates Reverse (-)

5758869 .. 5761591

Gene Structure 2723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATGGAATGGAAGGTATAGAAGACTTTTTTGGGTACCCCAGCTTGATCGACGAACCCCAATTCCCCAATTTTCTCTGGTCCAATCCCAGCCCTTCATTTCCTGAGATCGAATTCTCTGTTAATAGTGGTGTGGCTGCTCCCTCACAGACCCAGGAAAAACAGTGCCCTCGCAAGAGGGGACGAACCGAGTCTTGGAGTGGCTCAGGGGCCAAAGCTTGCCGTGAGAAATTGAGGAGGGAGAGATTGAATGACAAGTTTGTGGATTTGAGTGCTGTTTTGGAACCTGGGAGGCCAGCCAAGACTGACAAGCCTGCTATACTTGATGATGCCATTAGGGTCTTGACCCAACTGAGAGCTGAAGCTCAGGAGCTTACACAGACAAATGAAAAGTTGCTTGAAGAGATAAAGAGTTTAAAGGCAGAAAAGAATGAACTTCGTGAAGAGAAAGTTGTACTGAAAGCAGACAAAGAAAAGCTGGAACAGCAGTTGAAAGCTATGACCATTCCACCTTCTGGGTTTATGCCAGCCCACCCAGCAGTCCCTGCCGCATATCACCCTGGGGCAAGCAAGATGGCAGTCTATCCTAGCTATGGCATGATCCCAATGTGGCACTATTTACCTCCATCAACCCGTGATACATCTCGTGATCATGAGCTTAGGCCCCCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

225

Amino Acids

25.24

Weight (kDa)

6.15

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	71 - 119	5.3e-08	Helix-loop-helix DNA-binding domain
bHLH_IRO3	PF23177	72 - 136	1.7e-07	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23210 AT3G23210 AT4G14410 AT4G14410 AT4G14410
fragaria_vesca	FvH4_4g03420
malus_domestica	MD13G1212400.v1.1 MD16G1216000.v1.1
prunus_persica	Prupe.1G037400_v2.0.a1
pyrus_communis	pycom13g18420 pycom16g18070
rosa_chinensis	RchiOBHm_Chr4g0392401
rosa_laevigata	RLG00000009814
rosa_multiflora	Rmu_sc0001800.1_g000017
rosa_roxburghii	Rroxscaffold_5G00337580
rosa_rugosa	Rorug03G0338600
rosa_samantha	Rh4AG042400 Rh4BG037300 Rh4CG045200 Rh4DG039700
rosa_wichuraiana	Rw4G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	36
AccB1I	GGYRCC	1 cut(s)	36
AccB7I	CCANNNNNTGG	1 cut(s)	515
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	38, 456
AfiI	CCNNNNNNNGG	3 cut(s)	195, 515, 593
AgsI	TTSAA	3 cut(s)	250, 401, 493
AjnI	CCWGG	3 cut(s)	153, 286, 559
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 178, 210
AloI	GAACNNNNNNTCC	2 cut(s)	48, 80
AluBI	AGCT	9 cut(s)	45, 218, 359, 365, 373, 478, 497, 591, 658
AluI	AGCT	9 cut(s)	45, 218, 359, 365, 373, 478, 497, 591, 658
AlwI	GGATC	1 cut(s)	595
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	3 cut(s)	210, 293, 662
ApeKI	GCWGC	2 cut(s)	137, 671
ApoI	RAATTY	1 cut(s)	113
Asp718I	GGTACC	1 cut(s)	36
AspS9I	GGNCC	3 cut(s)	81, 210, 663
AsuHPI	GGTGA	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	124, 658
BccI	CCATC	2 cut(s)	568, 634
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	3 cut(s)	155, 288, 561
BclI	TGATCA	1 cut(s)	649
BfaI	CTAG	1 cut(s)	588
BisI	GCNGC	3 cut(s)	138, 549, 672
BlsI	GCNGC	3 cut(s)	139, 550, 673
Bme1390I	CCNGG	3 cut(s)	155, 288, 561
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	3 cut(s)	81, 210, 663
BmiI	GGNNCC	4 cut(s)	38, 211, 285, 665
BmrFI	CCNGG	3 cut(s)	155, 288, 561
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	3 cut(s)	205, 366, 659
BsaJI	CCNNGG	4 cut(s)	153, 287, 559, 560
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 515, 593
BseBI	CCWGG	3 cut(s)	155, 288, 561
BseDI	CCNNGG	4 cut(s)	153, 287, 559, 560
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	195, 515, 593
BseMII	CTCAG	4 cut(s)	96, 219, 344, 380
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	124, 658
BseYI	CCCAGC	3 cut(s)	41, 89, 535
BshFI	GGCC	3 cut(s)	212, 295, 664
BshNI	GGYRCC	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	195, 527
BslI	CCNNNNNNNGG	3 cut(s)	195, 515, 593
BsmFI	GGGAC	2 cut(s)	195, 527
BsnI	GGCC	3 cut(s)	212, 295, 664
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	4 cut(s)	48, 108, 600, 649
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	3 cut(s)	212, 295, 664
BspCNI	CTCAG	4 cut(s)	97, 218, 345, 379
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	4 cut(s)	38, 211, 285, 665
BspPI	GGATC	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	36
BssECI	CCNNGG	4 cut(s)	153, 287, 559, 560
BssMI	GATC	4 cut(s)	48, 108, 600, 649
BssSI	CACGAG	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	3 cut(s)	155, 288, 561
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	2 cut(s)	396, 438
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	5 cut(s)	220, 297, 315, 528, 568
BstDEI	CTNAG	6 cut(s)	105, 205, 353, 366, 659, 675
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	51, 111, 603, 652
BstMBI	GATC	4 cut(s)	48, 108, 600, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	484, 536, 545
BstNI	CCWGG	3 cut(s)	155, 288, 561
BstSCI	CCNGG	3 cut(s)	153, 286, 559
BstSLI	GKGCMC	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	124, 658
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	212, 295, 664
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	5 cut(s)	220, 297, 315, 528, 568
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	1 cut(s)	652
Cfr13I	GGNCC	3 cut(s)	81, 210, 663
Csp6I	GTAC	2 cut(s)	37, 455
CviAII	CATG	2 cut(s)	598, 653
CviQI	GTAC	2 cut(s)	37, 455
DdeI	CTNAG	6 cut(s)	105, 205, 353, 366, 659, 675
DpnI	GATC	4 cut(s)	50, 110, 602, 651
DpnII	GATC	4 cut(s)	48, 108, 600, 649
DraI	TTTAAA	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	396, 438
EarI	CTCTTC	2 cut(s)	396, 438
Eco47I	GGWCC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	663
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	3 cut(s)	153, 286, 559
FaeI	CATG	2 cut(s)	601, 656
FaiI	YATR	8 cut(s)	20, 320, 500, 524, 553, 594, 599, 654
FaqI	GGGAC	2 cut(s)	195, 527
FatI	CATG	2 cut(s)	597, 652
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	138, 549, 672
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	138, 549, 672
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	3 cut(s)	138, 549, 672
GsaI	CCCAGC	3 cut(s)	45, 93, 539
HaeIII	GGCC	3 cut(s)	212, 295, 664
Hin1II	CATG	2 cut(s)	601, 656
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	548
Hpy188III	TCNNGA	6 cut(s)	104, 343, 368, 440, 647, 653
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	8, 105, 522
HpyCH4III	ACNGT	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	484, 536, 545
HpyF3I	CTNAG	6 cut(s)	105, 205, 353, 366, 659, 675
Hsp92II	CATG	2 cut(s)	601, 656
KpnI	GGTACC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	48, 108, 600, 649
LmnI	GCTCC	2 cut(s)	145, 370
Lsp1109I	GCAGC	2 cut(s)	124, 658
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	588
MalI	GATC	4 cut(s)	50, 110, 602, 651
MboI	GATC	4 cut(s)	48, 108, 600, 649
MboII	GAAGA	3 cut(s)	35, 413, 455
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	4 cut(s)	62, 70, 113, 230
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	154, 171, 180, 228, 231, 285, 633
MseI	TTAA	2 cut(s)	123, 416
MspR9I	CCNGG	3 cut(s)	155, 288, 561
MvaI	CCWGG	3 cut(s)	155, 288, 561
MwoI	GCNNNNNNNGC	3 cut(s)	484, 536, 545
NdeII	GATC	4 cut(s)	48, 108, 600, 649
NlaIII	CATG	2 cut(s)	601, 656
NlaIV	GGNNCC	4 cut(s)	38, 211, 285, 665
PagI	TCATGA	1 cut(s)	652
PasI	CCCWGGG	1 cut(s)	560
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	3 cut(s)	139, 550, 673
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	153, 286, 559
PspFI	CCCAGC	3 cut(s)	41, 89, 535
PspGI	CCWGG	3 cut(s)	153, 286, 559
PspN4I	GGNNCC	4 cut(s)	38, 211, 285, 665
PspPI	GGNCC	3 cut(s)	81, 210, 663
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	2 cut(s)	38, 456
RsaNI	GTAC	2 cut(s)	37, 455
SaqAI	TTAA	2 cut(s)	123, 416
SatI	GCNGC	3 cut(s)	138, 549, 672
Sau3AI	GATC	4 cut(s)	48, 108, 600, 649
Sau96I	GGNCC	3 cut(s)	81, 210, 663
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	155, 288, 561
SduI	GDGCHC	1 cut(s)	170
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	81
Sse9I	AATT	4 cut(s)	62, 70, 113, 230
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	3 cut(s)	153, 286, 559
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	51, 111
TasI	AATT	4 cut(s)	62, 70, 113, 230
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	1 cut(s)	551
Tru1I	TTAA	2 cut(s)	123, 416
Tru9I	TTAA	2 cut(s)	123, 416
TscAI	CASTG	1 cut(s)	170
TseI	GCWGC	2 cut(s)	137, 671
TspDTI	ATGAA	3 cut(s)	87, 402, 447
TspRI	CASTG	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	1 cut(s)	113
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.