Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010373

Physical Location & Seq

Genomic Coordinates Reverse (-)

3073288 .. 3076190

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATGCAATGGAAGGCATAGAAGACTTTTTTGGGTACAACAGCTTAATCGACGAGACCCAATTCCCCAATTTCCTGTGGTCCAATCCCAATCCCACCCCTTCATTTCATGAAATCGAATTCTCTGCTAATAGTGGTGTTGCTGCTTCTGCTGCTCCTTCATCACAGACCCAGGAGAAAGAGTGTTCTCGCAAGAGGGGACGAACAGAGTCTTGGTGTGGCTCAGGGGCCAAAGCTTGTCGTGAGAAATTAAGGAGGGAGAGATTGAATGACAAGTTTTTGGATTTGAGTGCTGTTTTGGAACCTGGTAGACCAGCCAAGACTGACAAGCCTGCTATACTTGATGATGCCATTAGGGTCTTGACCCAACTGAGAGCTGAAGCTCAGGAGCTCACACAGACAAACGAGAAGTTGCTTGAAGAGATAAAGAGTTTAAAGGCAGAAAAGAGTGAACTTCGTGAAGAGAAAGTTGTACTGAAAGCGGACAAGGAAAGGCTGGAGCAGCAGTTGAAAGCTATGACCATTCCACCTTCTGGGTTTATGCCAGCCCACCCAGCAGTCCCTGCTGCATATCACCCTGGGGCAAGTAAGATGGCAGTCTATCCAAGCTATGGCATGATCCCGATGTGGCACTATTTACCTCCATCGACCCGTGATACATCACGTGATCATGAGCTAAGGCCCCCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

232

Amino Acids

25.85

Weight (kDa)

6.02

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	77 - 125	4.3e-08	Helix-loop-helix DNA-binding domain
bHLH_IRO3	PF23177	78 - 142	3.4e-07	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23210 AT3G23210 AT4G14410 AT4G14410 AT4G14410
fragaria_vesca	FvH4_4g03420
malus_domestica	MD13G1212400.v1.1 MD16G1216000.v1.1
prunus_persica	Prupe.1G037400_v2.0.a1
pyrus_communis	pycom13g18420 pycom16g18070
rosa_chinensis	RchiOBHm_Chr4g0392401
rosa_laevigata	RLG00000009814
rosa_multiflora	Rmu_sc0001800.1_g000017
rosa_roxburghii	Rroxscaffold_5G00337580
rosa_rugosa	Rorug03G0338600
rosa_samantha	Rh4AG042400 Rh4BG037300 Rh4CG045200 Rh4DG039700
rosa_wichuraiana	Rw4G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	533, 611
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	399
AcvI	CACGTG	1 cut(s)	665
AfaI	GTAC	2 cut(s)	38, 474
AfiI	CCNNNNNNNGG	2 cut(s)	533, 611
AgsI	TTSAA	3 cut(s)	268, 419, 511
AjnI	CCWGG	3 cut(s)	171, 304, 577
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 196, 228
AluBI	AGCT	8 cut(s)	45, 236, 377, 383, 391, 515, 609, 676
AluI	AGCT	8 cut(s)	45, 236, 377, 383, 391, 515, 609, 676
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	613
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	228, 680
ApeKI	GCWGC	5 cut(s)	143, 152, 502, 566, 689
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	81, 228, 681
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	665
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	130, 139, 514, 553, 676
BccI	CCATC	2 cut(s)	586, 652
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	3 cut(s)	173, 306, 579
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	1 cut(s)	50
BisI	GCNGC	5 cut(s)	144, 153, 503, 567, 690
BlsI	GCNGC	5 cut(s)	145, 154, 504, 568, 691
Bme1390I	CCNGG	3 cut(s)	173, 306, 579
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	3 cut(s)	81, 228, 681
BmiI	GGNNCC	3 cut(s)	229, 303, 683
BmrFI	CCNGG	3 cut(s)	173, 306, 579
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	518
Bpu10I	CCTNAGC	3 cut(s)	223, 384, 677
BsaAI	YACGTR	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	171, 577, 578
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 491, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 611
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	173, 306, 579
BseDI	CCNNGG	3 cut(s)	171, 577, 578
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	533, 611
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	237, 362, 398
BseXI	GCAGC	5 cut(s)	130, 139, 514, 553, 676
BseYI	CCCAGC	1 cut(s)	553
BshFI	GGCC	2 cut(s)	230, 682
BsiHKAI	GWGCWC	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	213, 545
BslI	CCNNNNNNNGG	2 cut(s)	533, 611
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	213, 545
BsnI	GGCC	2 cut(s)	230, 682
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	618, 667
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	2 cut(s)	230, 682
BspCNI	CTCAG	3 cut(s)	236, 363, 397
BspHI	TCATGA	2 cut(s)	109, 670
BspLI	GGNNCC	3 cut(s)	229, 303, 683
BspPI	GGATC	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	15
BssECI	CCNNGG	3 cut(s)	171, 577, 578
BssMI	GATC	2 cut(s)	618, 667
Bst2UI	CCWGG	3 cut(s)	173, 306, 579
Bst6I	CTCTTC	2 cut(s)	414, 456
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	333, 546
BstDEI	CTNAG	5 cut(s)	223, 371, 384, 677, 693
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	621, 670
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	618, 667
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 152, 502, 554, 563
BstNI	CCWGG	3 cut(s)	173, 306, 579
BstSCI	CCNGG	3 cut(s)	171, 304, 577
BstV1I	GCAGC	5 cut(s)	130, 139, 514, 553, 676
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	230, 682
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	333, 546
CaiI	CAGNNNCTG	1 cut(s)	563
CciI	TCATGA	2 cut(s)	109, 670
Cfr13I	GGNCC	3 cut(s)	81, 228, 681
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	37, 473
CviAII	CATG	3 cut(s)	110, 616, 671
CviQI	GTAC	2 cut(s)	37, 473
DdeI	CTNAG	5 cut(s)	223, 371, 384, 677, 693
DpnI	GATC	2 cut(s)	620, 669
DpnII	GATC	2 cut(s)	618, 667
DraI	TTTAAA	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	414, 456
EarI	CTCTTC	2 cut(s)	414, 456
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	399
Eco72I	CACGTG	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	681
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	3 cut(s)	171, 304, 577
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	3 cut(s)	113, 619, 674
FaiI	YATR	9 cut(s)	20, 111, 338, 518, 542, 571, 612, 617, 672
FaqI	GGGAC	2 cut(s)	213, 545
FatI	CATG	3 cut(s)	109, 615, 670
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	144, 153, 503, 567, 690
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	5 cut(s)	144, 153, 503, 567, 690
GluI	GCNGC	5 cut(s)	144, 153, 503, 567, 690
GsaI	CCCAGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	230, 682
Hin1II	CATG	3 cut(s)	113, 619, 674
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	1 cut(s)	209
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	2 cut(s)	311, 452
Hpy188III	TCNNGA	7 cut(s)	110, 242, 361, 386, 458, 622, 671
Hpy8I	GTNNAC	2 cut(s)	311, 452
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	8, 111, 168, 540
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	2 cut(s)	8, 569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 152, 502, 554, 563
HpyF3I	CTNAG	5 cut(s)	223, 371, 384, 677, 693
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	3 cut(s)	113, 619, 674
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	618, 667
LmnI	GCTCC	3 cut(s)	160, 388, 499
Lsp1109I	GCAGC	5 cut(s)	130, 139, 514, 553, 676
LweI	GCATC	1 cut(s)	337
MabI	ACCWGGT	1 cut(s)	304
MaeII	ACGT	1 cut(s)	664
MalI	GATC	2 cut(s)	620, 669
MboI	GATC	2 cut(s)	618, 667
MboII	GAAGA	3 cut(s)	35, 431, 473
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	4 cut(s)	62, 70, 119, 248
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	3 cut(s)	189, 249, 651
MseI	TTAA	3 cut(s)	47, 251, 434
MspR9I	CCNGG	3 cut(s)	173, 306, 579
MvaI	CCWGG	3 cut(s)	173, 306, 579
MwoI	GCNNNNNNNGC	5 cut(s)	149, 152, 502, 554, 563
NdeII	GATC	2 cut(s)	618, 667
NlaIII	CATG	3 cut(s)	113, 619, 674
NlaIV	GGNNCC	3 cut(s)	229, 303, 683
PagI	TCATGA	2 cut(s)	109, 670
PasI	CCCWGGG	1 cut(s)	578
PflMI	CCANNNNNTGG	2 cut(s)	533, 611
PkrI	GCNGC	5 cut(s)	145, 154, 504, 568, 691
PleI	GAGTC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	665
PmlI	CACGTG	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	3 cut(s)	171, 304, 577
PspCI	CACGTG	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	3 cut(s)	171, 304, 577
PspN4I	GGNNCC	3 cut(s)	229, 303, 683
PspPI	GGNCC	3 cut(s)	81, 228, 681
PstNI	CAGNNNCTG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	38, 474
RsaNI	GTAC	2 cut(s)	37, 473
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	47, 251, 434
SatI	GCNGC	5 cut(s)	144, 153, 503, 567, 690
Sau3AI	GATC	2 cut(s)	618, 667
Sau96I	GGNCC	3 cut(s)	81, 228, 681
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	3 cut(s)	173, 306, 579
SduI	GDGCHC	1 cut(s)	393
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	81
Sse9I	AATT	4 cut(s)	62, 70, 119, 248
SsiI	CCGC	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	3 cut(s)	171, 304, 577
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	3 cut(s)	51, 117, 647
TasI	AATT	4 cut(s)	62, 70, 119, 248
TatI	WGTACW	1 cut(s)	472
Tru1I	TTAA	3 cut(s)	47, 251, 434
Tru9I	TTAA	3 cut(s)	47, 251, 434
TseI	GCWGC	5 cut(s)	143, 152, 502, 566, 689
TspDTI	ATGAA	4 cut(s)	93, 98, 126, 150
Van91I	CCANNNNNTGG	2 cut(s)	533, 611
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.