Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012397

Physical Location & Seq

Genomic Coordinates Forward (+)

14514494 .. 14515563

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGGGATTTTCCTGGGACTCCTGGGACTTTGACTGGCCTTCTTCTCAGGATTTCCCAATGCGTCTTTGCTGCCGGGTCCATTGCTTCCATGGCCACGACTGCCAGCTTCTTCAATTTCACTGCTTTCTGCTACCTGATTGCTTCAATGGGTCTGCAACTGATCTGGAGTTTGGTACTTGCATTGCTTGATGCATATTCCTTGGTGAAAAAGAAGGTCCTCCACAACCCTGTATTGGTTAGCCTCTTTGTTGTTGGAGACTGGGTTACAGCAACATTGTCTCTTGCAGCAGCTTCGGCCTCGGCGGGTGTAACCGTGTTGTACTTTAGTGATCTGAATGACTGCAATTACGGAAGGGAATGCCAAAAATACCAAATGGCAGTTGGTTTGGCATACCTGAGCTGGGTAACAGTTGCAATTTCTTCTCTGATTATGCTCTGGCTATTGGCAGCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

153

Amino Acids

16.32

Weight (kDa)

7.59

Isoelectric Point (pI)

19.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23200
fragaria_vesca	FvH4_4g03370 FvH4_4g03370
malus_domestica	MD13G1212200.v1.1
prunus_persica	Prupe.1G037100_v2.0.a1 Prupe.1G037100_v2.0.a1
pyrus_communis	pycom13g18400
rosa_chinensis	RchiOBHm_Chr4g0392361
rosa_laevigata	RLG00000009817
rosa_multiflora	Rmu_sc0001800.1_g000025
rosa_roxburghii	Rroxscaffold_5G00337540
rosa_rugosa	Rorug03G0338500 Rorug03G0338600 Rorug03G0338600
rosa_samantha	Rh4AG042100 Rh4BG037000 Rh4CG044900 Rh4DG039100
rosa_wichuraiana	Rw4G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	93
AfaI	GTAC	2 cut(s)	177, 323
AfiI	CCNNNNNNNGG	2 cut(s)	235, 403
AgsI	TTSAA	2 cut(s)	115, 147
AjnI	CCWGG	2 cut(s)	13, 22
AluBI	AGCT	3 cut(s)	108, 293, 402
AluI	AGCT	3 cut(s)	108, 293, 402
Alw26I	GTCTC	2 cut(s)	252, 285
AoxI	GGCC	3 cut(s)	37, 93, 297
ApeKI	GCWGC	4 cut(s)	71, 287, 290, 449
AspS9I	GGNCC	2 cut(s)	78, 217
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	78, 217
BalI	TGGCCA	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	58, 299, 302
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BciT130I	CCWGG	2 cut(s)	15, 24
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	252, 285
BisI	GCNGC	4 cut(s)	72, 288, 291, 450
BlsI	GCNGC	4 cut(s)	73, 289, 292, 451
Bme1390I	CCNGG	3 cut(s)	15, 24, 76
Bme18I	GGWCC	2 cut(s)	78, 217
BmgT120I	GGNCC	2 cut(s)	78, 217
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	3 cut(s)	15, 24, 76
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	76
BsaJI	CCNNGG	5 cut(s)	14, 23, 90, 201, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 403
Bse1I	ACTGG	2 cut(s)	40, 266
Bse3DI	GCAATG	2 cut(s)	81, 182
BseBI	CCWGG	2 cut(s)	15, 24
BseDI	CCNNGG	5 cut(s)	14, 23, 90, 201, 300
BseLI	CCNNNNNNNGG	2 cut(s)	235, 403
BseMI	GCAATG	2 cut(s)	81, 182
BseMII	CTCAG	2 cut(s)	61, 389
BseNI	ACTGG	2 cut(s)	40, 266
BseXI	GCAGC	3 cut(s)	58, 299, 302
BseYI	CCCAGC	1 cut(s)	402
BshFI	GGCC	3 cut(s)	39, 95, 299
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	31, 40
BslI	CCNNNNNNNGG	2 cut(s)	235, 403
BsmAI	GTCTC	2 cut(s)	252, 285
BsmFI	GGGAC	2 cut(s)	31, 40
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	39, 95, 299
Bsp143I	GATC	2 cut(s)	162, 331
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	3 cut(s)	39, 95, 299
BspCNI	CTCAG	2 cut(s)	60, 390
BspLI	GGNNCC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	81, 182
BsrI	ACTGG	2 cut(s)	40, 266
BssECI	CCNNGG	5 cut(s)	14, 23, 90, 201, 300
BssMI	GATC	2 cut(s)	162, 331
BssT1I	CCWWGG	2 cut(s)	90, 201
Bst2UI	CCWGG	2 cut(s)	15, 24
Bst4CI	ACNGT	2 cut(s)	316, 412
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	47, 398
BstDSI	CCRYGG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	165, 334
BstMAI	GTCTC	2 cut(s)	252, 285
BstMBI	GATC	2 cut(s)	162, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 101, 296
BstNI	CCWGG	2 cut(s)	15, 24
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	3 cut(s)	13, 22, 74
BstV1I	GCAGC	3 cut(s)	58, 299, 302
BsuRI	GGCC	3 cut(s)	39, 95, 299
BtgI	CCRYGG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	78, 217
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	176, 322
CviAII	CATG	2 cut(s)	91, 453
CviJI	RGCY	8 cut(s)	39, 95, 108, 243, 293, 299, 402, 442
CviKI_1	RGCY	8 cut(s)	39, 95, 108, 243, 293, 299, 402, 442
CviQI	GTAC	2 cut(s)	176, 322
DdeI	CTNAG	2 cut(s)	47, 398
DpnI	GATC	2 cut(s)	164, 333
DpnII	GATC	2 cut(s)	162, 331
EaeI	YGGCCR	1 cut(s)	93
Eco130I	CCWWGG	2 cut(s)	90, 201
Eco47I	GGWCC	2 cut(s)	78, 217
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	13, 22
EcoT14I	CCWWGG	2 cut(s)	90, 201
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	90, 201
FaeI	CATG	2 cut(s)	94, 456
FaiI	YATR	5 cut(s)	92, 196, 394, 434, 454
FaqI	GGGAC	2 cut(s)	31, 40
FatI	CATG	2 cut(s)	90, 452
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	72, 288, 291, 450
Fsp4HI	GCNGC	4 cut(s)	72, 288, 291, 450
GluI	GCNGC	4 cut(s)	72, 288, 291, 450
GsaI	CCCAGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	39, 95, 299
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	94, 456
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	336, 429
Hpy188III	TCNNGA	2 cut(s)	49, 166
HpyAV	CCTTC	3 cut(s)	50, 208, 348
HpyCH4III	ACNGT	2 cut(s)	316, 412
HpyCH4V	TGCA	6 cut(s)	157, 182, 194, 287, 345, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 101, 296
HpyF3I	CTNAG	2 cut(s)	47, 398
Hsp92II	CATG	2 cut(s)	94, 456
Kzo9I	GATC	2 cut(s)	162, 331
Lsp1109I	GCAGC	3 cut(s)	58, 299, 302
LweI	GCATC	1 cut(s)	181
MaeIII	GTNAC	3 cut(s)	265, 310, 406
MalI	GATC	2 cut(s)	164, 333
MboI	GATC	2 cut(s)	162, 331
MboII	GAAGA	3 cut(s)	35, 103, 414
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	3 cut(s)	115, 346, 417
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	230, 254, 310
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	3 cut(s)	15, 24, 76
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	2 cut(s)	15, 24
MwoI	GCNNNNNNNGC	3 cut(s)	92, 101, 296
NciI	CCSGG	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	162, 331
NlaIII	CATG	2 cut(s)	94, 456
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	456
PctI	GAATGC	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	73, 289, 292, 451
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	13, 22
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	2 cut(s)	13, 22
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	78, 217
PspPPI	RGGWCCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	177, 323
RsaNI	GTAC	2 cut(s)	176, 322
SatI	GCNGC	4 cut(s)	72, 288, 291, 450
Sau3AI	GATC	2 cut(s)	162, 331
Sau96I	GGNCC	2 cut(s)	78, 217
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	15, 24, 76
SetI	ASST	6 cut(s)	110, 138, 219, 295, 399, 404
SfaNI	GCATC	1 cut(s)	181
SinI	GGWCC	2 cut(s)	78, 217
Sse9I	AATT	3 cut(s)	115, 346, 417
SsiI	CCGC	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	13, 22, 74
StyI	CCWWGG	2 cut(s)	90, 201
TaaI	ACNGT	2 cut(s)	316, 412
TasI	AATT	3 cut(s)	115, 346, 417
TatI	WGTACW	1 cut(s)	321
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	4 cut(s)	71, 287, 290, 449
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	78, 217
XceI	RCATGY	1 cut(s)	456
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 380
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.