Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012975

Physical Location & Seq

Genomic Coordinates Reverse (-)

8528609 .. 8531358

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAACATGGACAAGGAAACAGAGCAAACCCTAAATTACTTACCTTTGGGTCAGAGCGATCCCTTTGGCAATGGCAATGAAGGAACAATTGGAGATTTCCTTGGAAGATACTGCAACAACCCTCAGGAGATTTCACCGTTAACTCTACAATCCTTCTCTCTGAATTCTCAGATCTCCGAGAATTTCCCAATCTCTGGTGGAATCAGATTCCCTCCATATCCAGGTCAATTTGGATCCGATCGTGAATTTGGGTCACAACCAACAACGCAGGAGAGTAACAAGAGCTCTTTGTTGGATCCAGATTCAGTTTCGGATCGAGTTCACACCACGAAATCTAACTCTAGAAAGAGGAAGTCGATTCCTAGTGGTAATGGCAAGGAGTCTCCAGCTTCATCGTCTCTTACAGCTTCCAATTCAAAGGTTTCAGGAGAGAATGGTGGATCTAAAGGTGGGAAGAGAAGCAAGCAAGATGTAGCTGGGAGTAGTAAAAACGGAGTAGAGAAGTGCGATAGTAAAGGCGACAATAAGGACGATGCTAAGCCTCCTGAGGCGCCTAAAGATTATATTCATGTCAGAGCTAGAAGGGGTCAAGCAACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGAATGACGTTGCTTCAGGATCTGGTTCCTGGTTGCAACCGGATTACAGGGAAAGCAGTCATGCTTGATGAAATTATAAATTATGTGCAGTCCTTGCAGAGACAAGTTGAGTTCTTGTCCATGAAGCTGGCTACCGTAAATCCAAGGATGGAGTTTAATGCTAATGCTTCTTTATCCACAGAGATGATTCAACCGGGGGAGTCGTTAACGCAGTCTCTTTACGCAATGGCTTGCTCAGAGCAAAGACTTCCATCAGCATACTATTCACTTGGCAAGAACATGCCAAGATTCTCAGACACACAATTCCCCTCAAACGATGGATTTGTTCACACTGAGACACCAGGATTCTGGGAAAATAATGACCTGCAAAGCATTGTTCAGATGGGTTTTGGAGATATCCTCCAGCAACAGAGCAACAACAACAACAACAACTGTTCTGAGCCAACGCTTCAGATGAAGCTTGAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

371

Amino Acids

40.76

Weight (kDa)

5.75

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	201 - 248	5.5e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	206 - 251	3.5e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23690
fragaria_vesca	FvH4_4g12760 FvH4_4g12760
malus_domestica	MD04G1023500.v1.1
prunus_persica	Prupe.1G173300_v2.0.a1 Prupe.1G173300_v2.0.a1
pyrus_communis	pycom04g02000
rosa_chinensis	RchiOBHm_Chr4g0412071
rosa_laevigata	RLG00000008324
rosa_multiflora	Rmu_sc0000711.1_g000061 Rmu_sc0000711.1_g000062
rosa_roxburghii	Rroxscaffold_5G00356350
rosa_rugosa	Rorug04G0106600
rosa_samantha	Rh4AG171200 Rh4BG170000 Rh4CG182100 Rh4DG165500
rosa_wichuraiana	Rw4G014270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	722
Acc36I	ACCTGC	1 cut(s)	1017
AccB1I	GGYRCC	1 cut(s)	550
AccB7I	CCANNNNNTGG	1 cut(s)	194
AclWI	GGATC	8 cut(s)	53, 228, 241, 290, 303, 321, 448, 672
AcsI	RAATTY	3 cut(s)	163, 181, 245
AcuI	CTGAAG	2 cut(s)	644, 1079
AcyI	GRCGYC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	194, 221
AgsI	TTSAA	3 cut(s)	417, 836, 1109
AjnI	CCWGG	3 cut(s)	220, 673, 985
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	7 cut(s)	285, 389, 407, 476, 578, 772, 1105
AluI	AGCT	7 cut(s)	285, 389, 407, 476, 578, 772, 1105
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	5 cut(s)	387, 402, 739, 864, 974
AlwI	GGATC	8 cut(s)	53, 228, 241, 290, 303, 321, 448, 672
AlwNI	CAGNNNCTG	1 cut(s)	667
ApoI	RAATTY	3 cut(s)	163, 181, 245
AspLEI	GCGC	1 cut(s)	553
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	1 cut(s)	126
AxyI	CCTNAGG	2 cut(s)	123, 546
BamHI	GGATCC	2 cut(s)	233, 295
BanI	GGYRCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	287
BccI	CCATC	4 cut(s)	787, 904, 956, 1021
BciT130I	CCWGG	3 cut(s)	222, 675, 987
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	5 cut(s)	387, 402, 739, 864, 974
BfaI	CTAG	3 cut(s)	342, 363, 579
BfoI	RGCGCY	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	1017
BglII	AGATCT	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	537
Bme1390I	CCNGG	4 cut(s)	222, 675, 840, 987
BmiI	GGNNCC	4 cut(s)	235, 297, 552, 672
BmrFI	CCNGG	4 cut(s)	222, 675, 840, 987
BmsI	GCATC	1 cut(s)	523
BplI	GAGNNNNNCTC	2 cut(s)	1029, 1061
BpmI	CTGGAG	2 cut(s)	369, 1031
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	100, 788, 839
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 221
Bse21I	CCTNAGG	2 cut(s)	123, 546
Bse3DI	GCAATG	3 cut(s)	76, 82, 876
BseBI	CCWGG	3 cut(s)	222, 675, 987
BseDI	CCNNGG	3 cut(s)	100, 788, 839
BseGI	GGATG	1 cut(s)	798
BseLI	CCNNNNNNNGG	2 cut(s)	194, 221
BseMI	GCAATG	3 cut(s)	76, 82, 876
BseMII	CTCAG	7 cut(s)	137, 182, 537, 894, 951, 969, 1074
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	752
Bsh1285I	CGRYCG	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	550
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	685, 839
BslI	CCNNNNNNNGG	2 cut(s)	194, 221
BsmAI	GTCTC	5 cut(s)	387, 402, 739, 864, 974
BsmBI	CGTCTC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	8 cut(s)	58, 171, 233, 238, 295, 313, 440, 664
Bsp1720I	GCTNAGC	1 cut(s)	537
BspCNI	CTCAG	7 cut(s)	136, 181, 538, 893, 950, 970, 1075
BspLI	GGNNCC	4 cut(s)	235, 297, 552, 672
BspMI	ACCTGC	1 cut(s)	1017
BspPI	GGATC	8 cut(s)	53, 228, 241, 290, 303, 321, 448, 672
BspT107I	GGYRCC	1 cut(s)	550
BsrDI	GCAATG	3 cut(s)	76, 82, 876
BssECI	CCNNGG	3 cut(s)	100, 788, 839
BssMI	GATC	8 cut(s)	58, 171, 233, 238, 295, 313, 440, 664
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	2 cut(s)	100, 788
Bst2UI	CCWGG	3 cut(s)	222, 675, 987
Bst4CI	ACNGT	3 cut(s)	138, 781, 1079
Bst6I	CTCTTC	2 cut(s)	449, 622
BstACI	GRCGYC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstC8I	GCNNGC	3 cut(s)	464, 774, 877
BstDEI	CTNAG	8 cut(s)	123, 168, 537, 546, 880, 937, 978, 1083
BstF5I	GGATG	1 cut(s)	798
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	8 cut(s)	61, 174, 236, 241, 298, 316, 443, 667
BstMAI	GTCTC	5 cut(s)	387, 402, 739, 864, 974
BstMBI	GATC	8 cut(s)	58, 171, 233, 238, 295, 313, 440, 664
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 739
BstNI	CCWGG	3 cut(s)	222, 675, 987
BstNSI	RCATGY	1 cut(s)	928
BstSCI	CCNGG	4 cut(s)	220, 673, 838, 985
BstX2I	RGATCY	5 cut(s)	171, 233, 295, 440, 664
BstXI	CCANNNNNNTGG	2 cut(s)	772, 993
BstYI	RGATCY	5 cut(s)	171, 233, 295, 440, 664
Bsu36I	CCTNAGG	2 cut(s)	123, 546
BtsCI	GGATG	1 cut(s)	798
BtsIMutI	CAGTG	1 cut(s)	975
BveI	ACCTGC	1 cut(s)	1017
Cac8I	GCNNGC	3 cut(s)	464, 774, 877
CaiI	CAGNNNCTG	1 cut(s)	667
CfoI	GCGC	1 cut(s)	553
CviAII	CATG	5 cut(s)	7, 569, 706, 766, 925
DdeI	CTNAG	8 cut(s)	123, 168, 537, 546, 880, 937, 978, 1083
DinI	GGCGCC	1 cut(s)	552
DpnI	GATC	8 cut(s)	60, 173, 235, 240, 297, 315, 442, 666
DpnII	GATC	8 cut(s)	58, 171, 233, 238, 295, 313, 440, 664
Eam1104I	CTCTTC	2 cut(s)	449, 622
EarI	CTCTTC	2 cut(s)	449, 622
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	100, 788
Eco24I	GRGCYC	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	1042
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	644, 1079
Eco81I	CCTNAGG	2 cut(s)	123, 546
EcoICRI	GAGCTC	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	3 cut(s)	220, 673, 985
EcoRV	GATATC	1 cut(s)	1042
EcoT14I	CCWWGG	2 cut(s)	100, 788
EcoT38I	GRGCYC	1 cut(s)	287
EgeI	GGCGCC	1 cut(s)	552
EheI	GGCGCC	1 cut(s)	552
ErhI	CCWWGG	2 cut(s)	100, 788
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	5 cut(s)	10, 572, 709, 769, 928
FatI	CATG	5 cut(s)	6, 568, 705, 765, 924
FokI	GGATG	1 cut(s)	805
FriOI	GRGCYC	1 cut(s)	287
FspBI	CTAG	3 cut(s)	342, 363, 579
GlaI	GCGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	2 cut(s)	369, 1031
HaeII	RGCGCY	1 cut(s)	554
HapII	CCGG	2 cut(s)	685, 839
HhaI	GCGC	1 cut(s)	553
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	5 cut(s)	10, 572, 709, 769, 928
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	2 cut(s)	141, 852
HindII	GTYRAC	2 cut(s)	141, 852
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	9 cut(s)	201, 207, 302, 358, 380, 832, 845, 933, 990
HpaI	GTTAAC	2 cut(s)	141, 852
HpaII	CCGG	2 cut(s)	685, 839
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	4 cut(s)	141, 322, 852, 973
Hpy188III	TCNNGA	7 cut(s)	125, 242, 299, 342, 426, 545, 662
Hpy8I	GTNNAC	4 cut(s)	141, 322, 852, 973
HpyAV	CCTTC	3 cut(s)	74, 163, 576
HpyCH4III	ACNGT	3 cut(s)	138, 781, 1079
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	5 cut(s)	114, 681, 733, 742, 1012
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 739
HpyF3I	CTNAG	8 cut(s)	123, 168, 537, 546, 880, 937, 978, 1083
HpySE526I	ACGT	1 cut(s)	653
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	5 cut(s)	10, 572, 709, 769, 928
HspAI	GCGC	1 cut(s)	551
KasI	GGCGCC	1 cut(s)	550
KspAI	GTTAAC	2 cut(s)	141, 852
Kzo9I	GATC	8 cut(s)	58, 171, 233, 238, 295, 313, 440, 664
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	3 cut(s)	342, 363, 579
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	2 cut(s)	252, 275
MalI	GATC	8 cut(s)	60, 173, 235, 240, 297, 315, 442, 666
MboI	GATC	8 cut(s)	58, 171, 233, 238, 295, 313, 440, 664
MboII	GAAGA	3 cut(s)	117, 466, 639
MfeI	CAATTG	1 cut(s)	87
MflI	RGATCY	5 cut(s)	171, 233, 295, 440, 664
MhlI	GDGCHC	1 cut(s)	287
Mly113I	GGCGCC	1 cut(s)	551
MlyI	GAGTC	2 cut(s)	389, 854
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	7 cut(s)	132, 222, 342, 541, 552, 964, 1055
MseI	TTAA	3 cut(s)	140, 801, 851
MslI	CAYNNNNRTG	1 cut(s)	827
MspI	CCGG	2 cut(s)	685, 839
MspR9I	CCNGG	4 cut(s)	222, 675, 840, 987
MunI	CAATTG	1 cut(s)	87
MvaI	CCWGG	3 cut(s)	222, 675, 987
MwoI	GCNNNNNNNGC	2 cut(s)	620, 739
NarI	GGCGCC	1 cut(s)	551
NciI	CCSGG	1 cut(s)	840
NdeII	GATC	8 cut(s)	58, 171, 233, 238, 295, 313, 440, 664
NlaIII	CATG	5 cut(s)	10, 572, 709, 769, 928
NlaIV	GGNNCC	4 cut(s)	235, 297, 552, 672
NmuCI	GTSAC	1 cut(s)	252
NspI	RCATGY	1 cut(s)	928
PfeI	GAWTC	7 cut(s)	201, 207, 302, 358, 832, 933, 990
PflMI	CCANNNNNTGG	1 cut(s)	194
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	2 cut(s)	388, 853
PluTI	GGCGCC	1 cut(s)	554
PpsI	GAGTC	2 cut(s)	388, 853
PsiI	TTATAA	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	287
Psp6I	CCWGG	3 cut(s)	220, 673, 985
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	3 cut(s)	220, 673, 985
PspN4I	GGNNCC	4 cut(s)	235, 297, 552, 672
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	5 cut(s)	171, 233, 295, 440, 664
PvuI	CGATCG	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	827
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	140, 801, 851
Sau3AI	GATC	8 cut(s)	58, 171, 233, 238, 295, 313, 440, 664
SchI	GAGTC	2 cut(s)	389, 854
ScrFI	CCNGG	4 cut(s)	222, 675, 840, 987
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	1 cut(s)	523
SfoI	GGCGCC	1 cut(s)	552
SmiMI	CAYNNNNRTG	1 cut(s)	827
SspDI	GGCGCC	1 cut(s)	550
SspMI	CTAG	3 cut(s)	342, 363, 579
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	4 cut(s)	220, 673, 838, 985
StyI	CCWWGG	2 cut(s)	100, 788
TaaI	ACNGT	3 cut(s)	138, 781, 1079
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	2 cut(s)	316, 356
TfiI	GAWTC	7 cut(s)	201, 207, 302, 358, 832, 933, 990
Tru1I	TTAA	3 cut(s)	140, 801, 851
Tru9I	TTAA	3 cut(s)	140, 801, 851
TscAI	CASTG	1 cut(s)	982
TseFI	GTSAC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	7 cut(s)	17, 93, 381, 557, 729, 782, 1115
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	982
Van91I	CCANNNNNTGG	1 cut(s)	194
XapI	RAATTY	3 cut(s)	163, 181, 245
XbaI	TCTAGA	1 cut(s)	341
XceI	RCATGY	1 cut(s)	928
XspI	CTAG	3 cut(s)	342, 363, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.