Rorug04G0106600
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
16460612 .. 16474886
14275 bp
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UTR
Exon/CDS
Intron
Rorug04G0106600.1

Sequence Viewer

Length: 282 bp
ATGAGCAACCAAGTCAACACCGTATCAATTGACTTACGAAATTTAGATGGGATCTATTTATTGGAGGAGTCTGACCAGGAAAATGGAGGGCAAAGAAGCACCAGTGTAAAAGGGCCAGCAGTAGAGGAAATTATCAAAACACGAGCTAAGGAAATGCATAGGTGGAATACATTCTTCATTATTCTGTGTGCATTTGCGGTCTTCATTGATCCTTTATTCTGCTATGCCAATGTCATTGAGGAAGACCATATGTGCTTCAATTACGACATGAAATTGCTGTAG

Protein Analysis

93

Amino Acids

10.75

Weight (kDa)

4.69

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010348)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 2 cut(s) 59, 203
AcsI RAATTY 1 cut(s) 40
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
AlwI GGATC 2 cut(s) 59, 203
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 113
BauI CACGAG 1 cut(s) 141
BbsI GAAGAC 2 cut(s) 193, 249
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 77
BpiI GAAGAC 2 cut(s) 193, 249
Bpu10I CCTNAGC 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 115
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 51, 208
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 115
BspPI GGATC 2 cut(s) 59, 203
BsrI ACTGG 1 cut(s) 102
BssMI GATC 2 cut(s) 51, 208
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 54, 211
BstMBI GATC 2 cut(s) 51, 208
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 278
BstV2I GAAGAC 2 cut(s) 193, 249
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 1 cut(s) 268
CviJI RGCY 2 cut(s) 115, 146
CviKI_1 RGCY 2 cut(s) 115, 146
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 53, 210
DpnII GATC 2 cut(s) 51, 208
EcoRII CCWGG 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 159
FaeI CATG 1 cut(s) 271
FaiI YATR 5 cut(s) 159, 225, 249, 251, 269
FatI CATG 1 cut(s) 267
FauNDI CATATG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 115
Hin1II CATG 1 cut(s) 271
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 157, 191
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 1 cut(s) 271
Kzo9I GATC 2 cut(s) 51, 208
LpnPI CCDG 4 cut(s) 62, 89, 115, 129
MalI GATC 2 cut(s) 53, 210
MboI GATC 2 cut(s) 51, 208
MboII GAAGA 3 cut(s) 166, 193, 254
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 51
MluCI AATT 5 cut(s) 27, 40, 129, 259, 272
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 4 cut(s) 58, 80, 118, 232
Mph1103I ATGCAT 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 77
NdeI CATATG 1 cut(s) 249
NdeII GATC 2 cut(s) 51, 208
NlaIII CATG 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 170
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 51
Sau3AI GATC 2 cut(s) 51, 208
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 77
SetI ASST 2 cut(s) 148, 164
SfcI CTRYAG 1 cut(s) 278
SgeI CNNG 7 cut(s) 23, 88, 89, 114, 128, 153, 155
Sse9I AATT 5 cut(s) 27, 40, 129, 259, 272
SsiI CCGC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 22
TasI AATT 5 cut(s) 27, 40, 129, 259, 272
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 166, 193
TspRI CASTG 1 cut(s) 109
XapI RAATTY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.