Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010348

Physical Location & Seq

Genomic Coordinates Forward (+)

28868938 .. 28878518

Gene Structure 9581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4005 bp

ATGAAGCCTATGCAGCCGCGCCACAACTTCTTACGGGAGACGACGGAGAATCCGCAGTCGCCAAACCCTAGCTCCGGCAAGCCTAGGGTCCCGCGGAAGCATAAAGCCTCGAAGGAGAACGCGCCTCCGTCTTCAGATCTCAACTATACGGCCTTCGATTCGAAGCCTTCGCCAGCGGCCAAGTTGAAGAGTCCGCTGCCGCCGCGGCCGCCGCCGTCAAATCCTCTCAAACGGAAGCTCGAGATGCTCCCTGAGAACTCCGTCCATGGAGCCTCTGATTCTGGCGTCCAGGTAATCGTGAGAATGCGGCCGCCACGAAAGGACAGGGATGAAGGAGACATGATGGTGCAGAAAACTGCTGGTGATTCTTTGTCAATAAATGGACAAACCTTCACATTTGACTCAGTGGCCGACACAGATGCATCACAGCTAGATATTTTCCAGCTTGTAGGAGTTCCACTGGTTGAAAATTGTATGGCTGGGTTCAACAGTTCTGTGTTTGCATACGGACAGACTGGAAGTGGAAAGACATACACTATGTGGGGTCCTGCTAATGCATTGTTGGATGAAAATTTATCAAGTGATCAACAAGGCTTAACTCCCCGTGTTCTCAAGCGTCTTTTTGCTCGCATAAATGAGGAGCAAATCAAGCATGCTGACAAACAACTCAAGTATCAGTGCCAGTGTTCTTTTCTAGAGATTTACAATGAACAAATCACAGATCTGTTGGATCCAAATCCAAAAAGTCTTCAGATAAGAGAAGATGTTAAATCAGGTGTCTATGTGGAAAATCTCACAGAGGAATGTGTACGCACAATCAAAGATGTGACTCAGCTTTTGATAAAGGGGTTGTCAAACAGAAGGACTGGTTCAACTAGTATCAATGCGGACAGTTCTCGCTCACATACTGTTTTTACCTGTGTTGTTGAATCTCGATACAAGAGTGTGGCAGATGGTACAAGCAGCTTTAAAAGGAGTAGAATAAATCTTGTTGATCTAGCTGGATCAGAGCGTCAAAAGTTAACTGGTGCAGCTGGGGAGCGCTTGAAGGAAGCAGGCAATATCAATCGATCACTCTCACAGCTTGGGAATTTGATAAACATCCTTGCTGAAATTTCTCAGACAGGAAAGCAAAGGCATATCCCCTATAGAGATTCCAGGTTGACATTCTTACTTCAGGAGTCTCTTGGGGGGAATGCGAAGTTAGCAATGGTTTGTGCTGTTTCTCCAACACAGAGCTGTAAGAGTGAGACTTTCAGTACATTGAGATTTGCTCAGCGTGCCAAGGCTATCAAGAATAAGGCAGTTGTTAATGAAGTAATGCAGGATGATGTGAATCACTTGCGTGAAGTGATACGACAATTAAGGGATGAACTACAGCGAATCAAAGCAAATGGGAAGAATGCAGTTGACGCAAACGGAGGTCATTCGGCAGCGTGGTTTCGTCAAAGCTTGAATATACTAAAGGCTAGTCTTAACCGTCCAATGATGTCATCTCGTATTGATGATGACGGTGATGAGGAGATGGAAATTGATGAGGAAGCTGTTGAGAGGCTATGTGATGAAGTGGCTAACCAATCAGTTGGCTGTTATGCAAGAAACCTACCTAATGTGAGCAATGTAGACACAAGTAAATCTCATTCCGAACTTATGGGTGTTCAAATTGGAAGCTCTGATGTTCCTCAGACCCGCACATCTGGAAGTGGTTTTGTCACAGAACAAGGTTCAGATGATGCAGATGTTAAGATGGAAGAAGAAATGTCTGATGTTCCTCAGAAGCACACATATGGAAGTGCTTGTATCACAGAACAAGTTCCTGATGATACATATGTCAAAATGGAAGAAGAAGTTTCTGAACAAGAAGAGTCCATGATTGTTGATTCTGTTGCTGACACCCCAGATATTACAAGTTCCTCCATCTGCAATTTGCTAACTGAAGAGTCAGCGAGTAAAAAAGTACACGATGACTCCTCGTGTGAAGCATCTGAACCGGCTGGTGTAGTATCTGAATACCTTTCAGTTGCAGATGAGCCCAATAAATCACAAAATGTTTCAGTAAATTGTGTTTCTCCGAGCCTCATGATAGTTCCATGTGATGTAAGCCCAATCCTAAAATCTCCTACTCCCAGTGTTTCACCTAGGGTGAACACCAGCAGGAAAAGTTTGAGGACCTCATCAATGATGACAGCTTCTCAGAAGGATCTTTTTGATGGCAGTCAATTAAGCCCAAAGGCCATGCACCTATCTGTGGAGAAACCTGAAAAAATATGCTCCTCTATTGATCCATCAACTCAGACATGTAAGAATTTTTCAGCACCAGCTGAACAGTTGGCAGCAAGCATTCGCCATGGCCTTGAAATTATTGGTAGTCAGCGCCATAGTTCAGCTTTGAGGAGATCAGCATTCAGGTTTTCACTGAAGCCTTCAGAGTCGAGGCAGATTTTGCCAGTTCCCAAAGTTGATGCTGGTGTGCAAACTGTTGATGAGTTACCACAAGAAGATTCAGTGGACTATATTTGTAATAATTGCAAGAACAGAATGGAGCTAGAGGGTAAAGAGGCTAATGAACTTTCTAAAATGGAATTAGTACCTGTGGATGCATCAGAGCCTGCTGACAAATCCAGGATTCAGGTTCCAAAAGCCGTAGAAAAGGTGTTAGCCGGAGCCATCCGCAGAGAAATGGCATTAGAAGACATATGTGCCAAGAAAACTTCTGAGATAATGCAGCTTAACCGTTTGGTGCAGCAGTACAAGCATGAGAGGGAATGCAATGCTATTATATCCCAGACAAGGGAGGATAAGATTCTTCGCCTTGAGAGCCTTATGGATGGTGTTTTACCCACTGAGGAGTTCATGGAGGAAGAACTAGTGTCCCTCACACATGATTACAAGCTTTTGAAGGAGAAATACGAGAACCATCCAGAGCTTTTGAGGACAAAGATCGAGTTAAAAAGAGTTCAAGATGAGCTGGAAAATTTACGTAACTTTAATGATATGGGTGAAAGAGAGGTGTTGTTGGAAGAGATTCAAGATTTAAGAAGCCATCTACAGTATTATGTGGACTCCTCATCCACATCATCCCGCACACGAAACTCTATGCTGCAGTTGACCTATTCCTGTGAGCCAAAGTTGGCCCCTCTTAGTACAATTCAAGAGTCAAATGAGGAAAGCGTTGAGCAGAAATTTGAACAGGAGAGGAAACAGTGGACCGAGGTAGAGAGTACATGGATTTCTCTTTCTGAGGAATTAAGAACTGAACTTGAGGCTAGCAGATCACTGGTTGAAAAGACAAAGCAGGAATTAGAAACAGAGAAGAAATGTGCTGAAGAGCTCAAGGAAGCAATGCAACGGGCAATGGAGGGGCAGTCACGAATGTTGGAACAGTATGCAGATTTGGAAGAGAAACATATGGAACTTCTTATAAGGCATAGGAAGATCCGGGATGGAGTGGAAGATGTAAAGAAGGCAGCTGCTAAGGCTGGAGTTAGGGGTGCTGAGTCCAAGTTTATAAATTCTCTCGCTGCAGAAATTACAGCACTGAGATTAGAAAGAGAAAGAGAAAGGAGATATCTGAGGGATGAAAATAAGGGGCTTCAGGCTCAATTACAGGATACTGCTGAAGCTGTACAGGCTGCGGGTGAATTGCTGATACGACTCAAAGAAGCAGATGAGGCTGTTGCTATTGCTCAGAGACAAGCTACAGAGGCCCAGCAAGAAACAAACAAGGCTTACATCAAGATTGAAAAATTGAAGAAAAAACACGAAAAGGAGATAAGCAGTCTTAATGAGCTTCTTGCTCAGTCTCAGTTACCCAAAGAAGCGATCCGACCGGCTTATGATGAAGATTCTCATATTGCAAAATATGACGTAGGTGAACCCCATAGTTTGAGTGATAAGCGGTGGAAAGAGGAATTTGAGCCATCCTACAATGGGGAGGATGGCGAGTTACGAAAACTTGCTGAACCCTCATCATGGTTCTCTGGTTACGACCGATGCAACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

1335

Amino Acids

149.41

Weight (kDa)

5.36

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	97 - 243	5.6e-21	Microtubule binding
Kinesin	PF00225	122 - 431	2e-106	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23670 AT3G23670 AT4G14150
fragaria_vesca	FvH4_4g12770 FvH4_4g12770
malus_domestica	MD04G1023400.v1.1 MD13G1280700.v1.1
prunus_persica	Prupe.1G173100_v2.0.a1
pyrus_communis	pycom04g01990 pycom13g29270
rosa_chinensis	RchiOBHm_Chr4g0412101
rosa_laevigata	RLG00000008323
rosa_multiflora	Rmu_co8521685.1_g000001 Rmu_sc0004447.1_g000004
rosa_roxburghii	Rroxscaffold_5G00356370
rosa_rugosa	Rorug04G0106600
rosa_samantha	Rh4AG171300 Rh4BG170100 Rh4CG182200 Rh4DG165600
rosa_wichuraiana	Rw4G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3422, 3509
AccI	GTMKAC	1 cut(s)	1623
AccII	CGCG	4 cut(s)	19, 94, 122, 205
AclWI	GGATC	7 cut(s)	725, 738, 1012, 2208, 2276, 3430, 3817
AcoI	YGGCCR	4 cut(s)	177, 206, 308, 408
AcsI	RAATTY	8 cut(s)	571, 1090, 1113, 2305, 2974, 3182, 3511, 3911
AcuI	CTGAAG	9 cut(s)	117, 734, 1160, 1956, 2409, 2438, 3345, 3578, 3639
AcyI	GRCGYC	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	540
AfaI	GTAC	9 cut(s)	810, 958, 1261, 1959, 2589, 2750, 3145, 3223, 3627
AfeI	AGCGCT	1 cut(s)	1043
AfiI	CCNNNNNNNGG	6 cut(s)	74, 2248, 2790, 2791, 3930, 3972
AflIII	ACRYGT	1 cut(s)	2297
AhlI	ACTAGT	2 cut(s)	875, 2866
AjnI	CCWGG	3 cut(s)	288, 1157, 2621
AleI	CACNNNNGTG	1 cut(s)	1344
Alw21I	GWGCWC	1 cut(s)	3333
Alw26I	GTCTC	6 cut(s)	32, 330, 1188, 1244, 3685, 3807
AlwI	GGATC	7 cut(s)	725, 738, 1012, 2208, 2276, 3430, 3817
AlwNI	CAGNNNCTG	1 cut(s)	2609
Ama87I	CYCGRG	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	1043
AoxI	GGCC	9 cut(s)	150, 177, 206, 308, 408, 2232, 2350, 3132, 3705
ApoI	RAATTY	8 cut(s)	571, 1090, 1113, 2305, 2974, 3182, 3511, 3911
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
Asp700I	GAANNNNTTC	2 cut(s)	1812, 3024
AspA2I	CCTAGG	2 cut(s)	83, 2138
AspLEI	GCGC	4 cut(s)	21, 124, 1044, 2376
AspS9I	GGNCC	6 cut(s)	88, 545, 2169, 3133, 3207, 3706
AsuC2I	CCSGG	1 cut(s)	3440
AsuHPI	GGTGA	7 cut(s)	374, 1526, 2127, 2155, 3011, 3650, 3884
AsuII	TTCGAA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	3266
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	4 cut(s)	88, 545, 2169, 3207
AvrII	CCTAGG	2 cut(s)	83, 2138
BaeI	ACNNNNGTAYC	6 cut(s)	656, 689, 928, 961, 1815, 1848
BamHI	GGATCC	1 cut(s)	730
BanII	GRGCYC	2 cut(s)	2034, 3333
BarI	GAAGNNNNNNTAC	2 cut(s)	2891, 2923
BauI	CACGAG	1 cut(s)	1972
BbsI	GAAGAC	3 cut(s)	123, 740, 2697
Bbv12I	GWGCWC	1 cut(s)	3333
BceAI	ACGGC	3 cut(s)	165, 199, 2627
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	3 cut(s)	290, 1159, 2623
BciVI	GTATCC	1 cut(s)	3604
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	3440
BcoDI	GTCTC	6 cut(s)	32, 330, 1188, 1244, 3685, 3807
BcuI	ACTAGT	2 cut(s)	875, 2866
BfmI	CTRYAG	6 cut(s)	1147, 1376, 3047, 3101, 3522, 3699
BfoI	RGCGCY	2 cut(s)	1045, 2377
BfuI	GTATCC	1 cut(s)	3604
BglI	GCCNNNNNGGC	1 cut(s)	205
BglII	AGATCT	2 cut(s)	136, 721
BlnI	CCTAGG	2 cut(s)	83, 2138
BlpI	GCTNAGC	1 cut(s)	1275
Bme1390I	CCNGG	4 cut(s)	290, 1159, 2623, 3440
Bme18I	GGWCC	4 cut(s)	88, 545, 2169, 3207
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	6 cut(s)	88, 545, 2169, 3133, 3207, 3706
BmiI	GGNNCC	8 cut(s)	89, 90, 271, 546, 732, 2634, 2665, 3135
BmrFI	CCNGG	4 cut(s)	290, 1159, 2623, 3440
BmrI	ACTGGG	1 cut(s)	2121
BmsI	GCATC	9 cut(s)	234, 409, 431, 1723, 1991, 2452, 2587, 2609, 3983
BmtI	GCTAGC	1 cut(s)	3270
BmuI	ACTGGG	1 cut(s)	2121
BpiI	GAAGAC	3 cut(s)	123, 740, 2697
BplI	GAGNNNNNCTC	2 cut(s)	1258, 1290
BpmI	CTGGAG	1 cut(s)	3501
Bpu10I	CCTNAGC	1 cut(s)	3474
Bpu1102I	GCTNAGC	1 cut(s)	1275
Bpu14I	TTCGAA	1 cut(s)	161
BpuEI	CTTGAG	5 cut(s)	596, 653, 2834, 3281, 3317
BpuMI	CCSGG	1 cut(s)	3440
Bsa29I	ATCGAT	1 cut(s)	1069
BsaAI	YACGTR	1 cut(s)	2981
BsaBI	GATNNNNATC	3 cut(s)	735, 1100, 1335
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	8 cut(s)	83, 92, 203, 265, 1284, 2138, 2347, 3210
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 1952, 1982, 3350, 3380
Bsc4I	CCNNNNNNNGG	6 cut(s)	74, 2248, 2790, 2791, 3930, 3972
Bse118I	RCCGGY	2 cut(s)	1990, 3829
Bse1I	ACTGG	8 cut(s)	465, 520, 682, 871, 1030, 2127, 2447, 3282
Bse3DI	GCAATG	5 cut(s)	1215, 1624, 2776, 3348, 3360
Bse8I	GATNNNNATC	3 cut(s)	735, 1100, 1335
BseBI	CCWGG	3 cut(s)	290, 1159, 2623
BseCI	ATCGAT	1 cut(s)	1069
BseDI	CCNNGG	8 cut(s)	83, 92, 203, 265, 1284, 2138, 2347, 3210
BseJI	GATNNNNATC	3 cut(s)	735, 1100, 1335
BseLI	CCNNNNNNNGG	6 cut(s)	74, 2248, 2790, 2791, 3930, 3972
BseMI	GCAATG	5 cut(s)	1215, 1624, 2776, 3348, 3360
BseNI	ACTGG	8 cut(s)	465, 520, 682, 871, 1030, 2127, 2447, 3282
BseRI	GAGGAG	7 cut(s)	653, 1535, 1960, 2263, 2407, 2861, 3055
BseX3I	CGGCCG	2 cut(s)	206, 308
BseYI	CCCAGC	3 cut(s)	479, 1034, 3708
BsgI	GTGCAG	3 cut(s)	368, 1050, 2762
Bsh1236I	CGCG	4 cut(s)	19, 94, 122, 205
Bsh1285I	CGRYCG	4 cut(s)	209, 311, 3830, 3991
BshFI	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3134, 3707
BshVI	ATCGAT	1 cut(s)	1069
BsiEI	CGRYCG	4 cut(s)	209, 311, 3830, 3991
BsiHKAI	GWGCWC	1 cut(s)	3333
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	5 cut(s)	75, 1991, 2661, 3439, 3830
BslFI	GGGAC	2 cut(s)	74, 2857
BslI	CCNNNNNNNGG	6 cut(s)	74, 2248, 2790, 2791, 3930, 3972
BsmAI	GTCTC	6 cut(s)	32, 330, 1188, 1244, 3685, 3807
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	74, 2857
BsmI	GAATGC	6 cut(s)	309, 1201, 1408, 2340, 2402, 2771
BsnI	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3134, 3707
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	2034, 3333
Bsp1407I	TGTACA	1 cut(s)	3625
Bsp1720I	GCTNAGC	1 cut(s)	1275
Bsp19I	CCATGG	2 cut(s)	265, 2347
BspANI	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3134, 3707
BspDI	ATCGAT	1 cut(s)	1069
BspFNI	CGCG	4 cut(s)	19, 94, 122, 205
BspHI	TCATGA	1 cut(s)	2079
BspLI	GGNNCC	8 cut(s)	89, 90, 271, 546, 732, 2634, 2665, 3135
BspMAI	CTGCAG	2 cut(s)	3105, 3526
BspOI	GCTAGC	1 cut(s)	3270
BspPI	GGATC	7 cut(s)	725, 738, 1012, 2208, 2276, 3430, 3817
BspQI	GCTCTTC	1 cut(s)	3321
BspT104I	TTCGAA	1 cut(s)	161
BsrDI	GCAATG	5 cut(s)	1215, 1624, 2776, 3348, 3360
BsrFI	RCCGGY	2 cut(s)	1990, 3829
BsrGI	TGTACA	1 cut(s)	3625
BsrI	ACTGG	8 cut(s)	465, 520, 682, 871, 1030, 2127, 2447, 3282
BssAI	RCCGGY	2 cut(s)	1990, 3829
BssECI	CCNNGG	8 cut(s)	83, 92, 203, 265, 1284, 2138, 2347, 3210
BssNI	GRCGYC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	1972
BssT1I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
Bst2BI	CACGAG	1 cut(s)	1972
Bst2UI	CCWGG	3 cut(s)	290, 1159, 2623
Bst6I	CTCTTC	6 cut(s)	182, 1857, 1932, 3015, 3321, 3393
BstACI	GRCGYC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	2443
BstAUI	TGTACA	1 cut(s)	3625
BstBAI	YACGTR	1 cut(s)	2981
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	9 cut(s)	80, 174, 628, 654, 1057, 1281, 2338, 2610, 3268
BstDSI	CCRYGG	4 cut(s)	92, 203, 265, 2347
BstFNI	CGCG	4 cut(s)	19, 94, 122, 205
BstH2I	RGCGCY	2 cut(s)	1045, 2377
BstHHI	GCGC	4 cut(s)	21, 124, 1044, 2376
BstMAI	GTCTC	6 cut(s)	32, 330, 1188, 1244, 3685, 3807
BstMCI	CGRYCG	4 cut(s)	209, 311, 3830, 3991
BstNI	CCWGG	3 cut(s)	290, 1159, 2623
BstNSI	RCATGY	2 cut(s)	656, 2301
BstSCI	CCNGG	4 cut(s)	288, 1157, 2621, 3438
BstSFI	CTRYAG	6 cut(s)	1147, 1376, 3047, 3101, 3522, 3699
BstSNI	TACGTA	1 cut(s)	2981
BstUI	CGCG	4 cut(s)	19, 94, 122, 205
BstV2I	GAAGAC	3 cut(s)	123, 740, 2697
BstX2I	RGATCY	5 cut(s)	136, 721, 730, 2200, 3435
BstXI	CCANNNNNNTGG	1 cut(s)	1583
BstYI	RGATCY	5 cut(s)	136, 721, 730, 2200, 3435
BstZI	CGGCCG	2 cut(s)	206, 308
Bsu15I	ATCGAT	1 cut(s)	1069
BsuI	GTATCC	1 cut(s)	3604
BsuRI	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3134, 3707
BsuTUI	ATCGAT	1 cut(s)	1069
BtgI	CCRYGG	4 cut(s)	92, 203, 265, 2347
Cac8I	GCNNGC	9 cut(s)	80, 174, 628, 654, 1057, 1281, 2338, 2610, 3268
CaiI	CAGNNNCTG	1 cut(s)	2609
CciI	TCATGA	1 cut(s)	2079
CciNI	GCGGCCGC	2 cut(s)	206, 308
CfoI	GCGC	4 cut(s)	21, 124, 1044, 2376
Cfr10I	RCCGGY	2 cut(s)	1990, 3829
Cfr13I	GGNCC	6 cut(s)	88, 545, 2169, 3133, 3207, 3706
Cfr42I	CCGCGG	2 cut(s)	95, 206
ClaI	ATCGAT	1 cut(s)	1069
CseI	GACGC	4 cut(s)	274, 605, 1001, 1421
Csp6I	GTAC	9 cut(s)	809, 957, 1260, 1958, 2588, 2749, 3144, 3222, 3626
CviQI	GTAC	9 cut(s)	809, 957, 1260, 1958, 2588, 2749, 3144, 3222, 3626
DraI	TTTAAA	1 cut(s)	970
DraIII	CACNNNGTG	1 cut(s)	540
EaeI	YGGCCR	4 cut(s)	177, 206, 308, 408
EagI	CGGCCG	2 cut(s)	206, 308
Eam1104I	CTCTTC	6 cut(s)	182, 1857, 1932, 3015, 3321, 3393
EarI	CTCTTC	6 cut(s)	182, 1857, 1932, 3015, 3321, 3393
Ecl136II	GAGCTC	1 cut(s)	3331
EclXI	CGGCCG	2 cut(s)	206, 308
Eco105I	TACGTA	1 cut(s)	2981
Eco130I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
Eco24I	GRGCYC	2 cut(s)	2034, 3333
Eco32I	GATATC	1 cut(s)	3569
Eco47I	GGWCC	4 cut(s)	88, 545, 2169, 3207
Eco47III	AGCGCT	1 cut(s)	1043
Eco52I	CGGCCG	2 cut(s)	206, 308
Eco53kI	GAGCTC	1 cut(s)	3331
Eco57I	CTGAAG	9 cut(s)	117, 734, 1160, 1956, 2409, 2438, 3345, 3578, 3639
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	3331
EcoO109I	RGGNCCY	3 cut(s)	88, 545, 2169
EcoRII	CCWGG	3 cut(s)	288, 1157, 2621
EcoRV	GATATC	1 cut(s)	3569
EcoT14I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
EcoT22I	ATGCAT	3 cut(s)	424, 559, 2602
EcoT38I	GRGCYC	2 cut(s)	2034, 3333
ErhI	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
Esp3I	CGTCTC	1 cut(s)	32
FaqI	GGGAC	2 cut(s)	74, 2857
FauI	CCCGC	4 cut(s)	99, 1697, 3089, 3628
FauNDI	CATATG	4 cut(s)	1786, 1828, 2696, 3408
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	1 cut(s)	1623
FriOI	GRGCYC	2 cut(s)	2034, 3333
GlaI	GCGC	4 cut(s)	20, 123, 1043, 2375
GsaI	CCCAGC	3 cut(s)	483, 1038, 3712
GsuI	CTGGAG	1 cut(s)	3501
HaeII	RGCGCY	2 cut(s)	1045, 2377
HaeIII	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3134, 3707
HapII	CCGG	5 cut(s)	75, 1991, 2661, 3439, 3830
HgaI	GACGC	4 cut(s)	274, 605, 1001, 1421
HhaI	GCGC	4 cut(s)	21, 124, 1044, 2376
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	4 cut(s)	19, 122, 1042, 2374
HinP1I	GCGC	4 cut(s)	19, 122, 1042, 2374
HincII	GTYRAC	4 cut(s)	1023, 1164, 1411, 3108
HindII	GTYRAC	4 cut(s)	1023, 1164, 1411, 3108
HindIII	AAGCTT	2 cut(s)	1450, 2891
HpaI	GTTAAC	1 cut(s)	1023
HpaII	CCGG	5 cut(s)	75, 1991, 2661, 3439, 3830
HphI	GGTGA	7 cut(s)	374, 1526, 2127, 2155, 3011, 3650, 3884
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	2980, 3867
HpySE526I	ACGT	2 cut(s)	2980, 3867
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	4 cut(s)	19, 122, 1042, 2374
KflI	GGGWCCC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	1023
KspI	CCGCGG	2 cut(s)	95, 206
LguI	GCTCTTC	1 cut(s)	3321
LmnI	GCTCC	8 cut(s)	77, 252, 269, 640, 1039, 2276, 2542, 2663
LweI	GCATC	9 cut(s)	234, 409, 431, 1723, 1991, 2452, 2587, 2609, 3983
MaeII	ACGT	2 cut(s)	2980, 3867
MaeIII	GTNAC	8 cut(s)	826, 1711, 2487, 2981, 3366, 3807, 3945, 3983
MflI	RGATCY	5 cut(s)	136, 721, 730, 2200, 3435
MhlI	GDGCHC	2 cut(s)	2034, 3333
MmeI	TCCRAC	6 cut(s)	543, 708, 1253, 2997, 3357, 3850
Mph1103I	ATGCAT	3 cut(s)	424, 559, 2602
MroXI	GAANNNNTTC	2 cut(s)	1812, 3024
MslI	CAYNNNNRTG	3 cut(s)	344, 1344, 1785
MspA1I	CMGCKG	7 cut(s)	94, 176, 196, 205, 1034, 2321, 3470
MspI	CCGG	5 cut(s)	75, 1991, 2661, 3439, 3830
MspR9I	CCNGG	4 cut(s)	290, 1159, 2623, 3440
Mva1269I	GAATGC	6 cut(s)	309, 1201, 1408, 2340, 2402, 2771
MvaI	CCWGG	3 cut(s)	290, 1159, 2623
MvnI	CGCG	4 cut(s)	19, 94, 122, 205
NciI	CCSGG	1 cut(s)	3440
NcoI	CCATGG	2 cut(s)	265, 2347
NdeI	CATATG	4 cut(s)	1786, 1828, 2696, 3408
NheI	GCTAGC	1 cut(s)	3266
NlaIV	GGNNCC	8 cut(s)	89, 90, 271, 546, 732, 2634, 2665, 3135
NmuCI	GTSAC	3 cut(s)	826, 1711, 3366
NotI	GCGGCCGC	2 cut(s)	206, 308
NsiI	ATGCAT	3 cut(s)	424, 559, 2602
NspI	RCATGY	2 cut(s)	656, 2301
NspV	TTCGAA	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	1344
PaeI	GCATGC	1 cut(s)	656
PaeR7I	CTCGAG	1 cut(s)	239
PagI	TCATGA	1 cut(s)	2079
PciI	ACATGT	1 cut(s)	2297
PciSI	GCTCTTC	1 cut(s)	3321
PctI	GAATGC	6 cut(s)	309, 1201, 1408, 2340, 2402, 2771
PdmI	GAANNNNTTC	2 cut(s)	1812, 3024
PfoI	TCCNGGA	2 cut(s)	2621, 3438
Ppu21I	YACGTR	1 cut(s)	2981
PpuMI	RGGWCCY	3 cut(s)	88, 545, 2169
PscI	ACATGT	1 cut(s)	2297
PsiI	TTATAA	2 cut(s)	3422, 3509
Psp124BI	GAGCTC	1 cut(s)	3333
Psp5II	RGGWCCY	3 cut(s)	88, 545, 2169
Psp6I	CCWGG	3 cut(s)	288, 1157, 2621
PspFI	CCCAGC	3 cut(s)	479, 1034, 3708
PspGI	CCWGG	3 cut(s)	288, 1157, 2621
PspN4I	GGNNCC	8 cut(s)	89, 90, 271, 546, 732, 2634, 2665, 3135
PspPI	GGNCC	6 cut(s)	88, 545, 2169, 3133, 3207, 3706
PspPPI	RGGWCCY	3 cut(s)	88, 545, 2169
PstI	CTGCAG	2 cut(s)	3105, 3526
PstNI	CAGNNNCTG	1 cut(s)	2609
PsuI	RGATCY	5 cut(s)	136, 721, 730, 2200, 3435
PvuII	CAGCTG	3 cut(s)	1034, 2321, 3470
RsaI	GTAC	9 cut(s)	810, 958, 1261, 1959, 2589, 2750, 3145, 3223, 3627
RsaNI	GTAC	9 cut(s)	809, 957, 1260, 1958, 2588, 2749, 3144, 3222, 3626
RseI	CAYNNNNRTG	3 cut(s)	344, 1344, 1785
SacI	GAGCTC	1 cut(s)	3333
SacII	CCGCGG	2 cut(s)	95, 206
SapI	GCTCTTC	1 cut(s)	3321
Sau96I	GGNCC	6 cut(s)	88, 545, 2169, 3133, 3207, 3706
ScrFI	CCNGG	4 cut(s)	290, 1159, 2623, 3440
SduI	GDGCHC	2 cut(s)	2034, 3333
SfaNI	GCATC	9 cut(s)	234, 409, 431, 1723, 1991, 2452, 2587, 2609, 3983
SfcI	CTRYAG	6 cut(s)	1147, 1376, 3047, 3101, 3522, 3699
Sfr274I	CTCGAG	1 cut(s)	239
Sfr303I	CCGCGG	2 cut(s)	95, 206
SfuI	TTCGAA	1 cut(s)	161
SgrBI	CCGCGG	2 cut(s)	95, 206
SinI	GGWCC	4 cut(s)	88, 545, 2169, 3207
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	3 cut(s)	344, 1344, 1785
SmlI	CTYRAG	6 cut(s)	239, 611, 668, 2813, 3260, 3332
SmoI	CTYRAG	6 cut(s)	239, 611, 668, 2813, 3260, 3332
SnaBI	TACGTA	1 cut(s)	2981
SpeI	ACTAGT	2 cut(s)	875, 2866
SphI	GCATGC	1 cut(s)	656
SstI	GAGCTC	1 cut(s)	3333
StyD4I	CCNGG	4 cut(s)	288, 1157, 2621, 3438
StyI	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
TaiI	ACGT	2 cut(s)	2983, 3870
TaqI	TCGA	8 cut(s)	110, 156, 161, 240, 934, 1069, 2432, 2943
TaqII	GACCGA	2 cut(s)	3224, 4005
TatI	WGTACW	6 cut(s)	1259, 1957, 2748, 3143, 3221, 3625
TauI	GCSGC	9 cut(s)	19, 179, 202, 205, 208, 211, 214, 310, 313
TseFI	GTSAC	3 cut(s)	826, 1711, 3366
Tsp45I	GTSAC	3 cut(s)	826, 1711, 3366
TspGWI	ACGGA	6 cut(s)	59, 117, 247, 250, 522, 1434
VpaK11BI	GGWCC	4 cut(s)	88, 545, 2169, 3207
XapI	RAATTY	8 cut(s)	571, 1090, 1113, 2305, 2974, 3182, 3511, 3911
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	2 cut(s)	656, 2301
XhoI	CTCGAG	1 cut(s)	239
XmaJI	CCTAGG	2 cut(s)	83, 2138
XmiI	GTMKAC	1 cut(s)	1623
XmnI	GAANNNNTTC	2 cut(s)	1812, 3024
Zsp2I	ATGCAT	3 cut(s)	424, 559, 2602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.