Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010348

Physical Location & Seq

Genomic Coordinates Reverse (-)

33206389 .. 33215821

Gene Structure 9433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3993 bp

ATGAAGTCTATGCAGCCGCGCCACAACTTCTTGCGGGAGACGACGGAGCCTCCCCAGTCGCCAAACCCTAGCTCCGGCAAGCCTAGGGTCCCGCGGAAGCATAAAGCCTCGAAGGAGAACGCGCCTCCGTCTTCAGATCTCAACTATACGGCCTTCGATTCTAAGCCTTCGCCCGCGGCCAAGTTGAAGAGTCCGCTGCCGCCCCGGCCGCCGCCTTCAAATCCTCTCAAACGGAAGCTCGAGATGCTCCCTGAGAACTCCGTCCATGGAGCCTCTGATTCCGGTGTCCAGGTAATCGTGAGAATGCGGCCGCCACGAAAGGACAGGGATGAAGGAGAGATGATGGTGCAGAAAACTGCTGGTGATTCTTTGTCGATAAATGGACAAACCTTCACATTTGACTCGGTGGCCGACACAGATGCATCACAGCTAGATATTTTCCAGCTTGTAGGAGTACCACTGGTTGAAAATTGTATGGCTGGGTTCAACAGTTCTGTGTTTGCATACGGACAGACTGGAAGTGGAAAGACATACACTATGTGGGGTCCTGCAAATGCGTTGTTGGATGAAAATTTATCAAGTGATCAACAAGGCTTAACTCCCCGTGTTCTCGAGCGTCTTTTTGCTCGCATAAATGAGGAGCAAATCAAGCATGCTGACAAACAACTCAAGTATCAGTGCCAGTGTTCTTTTCTAGAGATTTACAACGAACAAATCACAGATCTGTTGGATCCAAATCCAAAAAGTCTTCAGATAAGAGAAGATGTTAAATCAGGTGTGTATGTGGAAAATCTCACAGAGGAATGTGTACGCACAATCAAAGATGTGACTCAGCTTTTGATAAAGGGGTTGTCAAACAGGAGGACTGGTTCAACTAGTATCAATGCGGACAGTTCTCGCTCACATACTGTTTTTACCTGTGTTGTTGAATCTCGATACAAGAGTGTGGCAGATGGTACAAGCAGCTTTAAAAGGAGTAGAATAAATCTTGTTGATCTAGCTGGATCAGAGCGCCAAAAGTTAACTGGTGCAGCTGGGGAGCGCTTGAAGGAAGCGGGCAATATCAATCGATCACTCTCACAACTTGGGAATTTGATAAACATCCTTGCTGAAATTTCTCAGACAGGAAAGCAAAGGCATATCCCCTATAGAGATTCCAGGTTGACATTCTTACTTCAGGAGTCTCTTGGGGGGAATGCAAAGTTAGCAATGGTTTGTGCTGTTTCTCCAACACAGAGCTGTAAGAGTGAGACTTTCAGTACATTGAGATTTGCTCAGCGTGCCAAGGCTATCAAGAATAAGGCAGTTGTTAATGAAGTAATGCAGGATGATGTGAATCACTTGCGTGAAGTGATACGACAATTAAGGGATGAACTACAGCGAATCAAAGCAAATGGGAAGAATGCAGTTGATGCAAATGGAGGTCATTCGGCGGCGTGGTTTCGTCAAAGCTTGAATATACTAAAGGCTAGTCTTAACCGTCCAATGATGTTATCTCATATTGATGATGACGGTGATGAGGAGATGGAAATTGATGAGGAAGCTGTTGAGAGGCTATGTGATGAAGTGGCTAACCAATCAGTTGGCTGTTATGCAAGAAACCTATCTAATGTGAGCAATGTAGATACAAGTAAATCTCATTCCGAACTTATGGGTGTTCAAATTGGAAGCTCTGATGTTCCTCAGACCCGCACATCTGGAAGTGGTTTTGTCACAGAACAAGGTTCAGATGATACAGATGTTAAGATGGAAGAAGAAATATCTGATGTTCCTCAGAAGCACACATTTGGAAGTGCTTGTATCACAGAACAAGGTCCTGGTGATACAAATGTCAAAATGGAAGAAGCAATTTCTGAACAAGAAGAGTCCATGATTGTTGATTCTGTTGCTGACACCCCAAATATTACAAGTTCCTCCATCTGCAATTTGCTAACTGAAGAGTCAGCCAGTAAAAAAGTACACGATGACTCCTCGTGTGAAGCATCTGAACCGGCTAGTGTAGTATCTGAATACCTTTCAGTGGCAGATGAGCCCAATAAATCACAAAGTGTTTCAGTAAATTGTGTTTCTCCGAGCCTCATGATAGTTCCATGTGATGTAACCCCAATCCTAAAATCTCCTACTCCCAGTGTTTCACCTAGGGTGAACACCAGCAGGAAAAGTTTGAGGACCTCATCAATGATGACAGCTTCTCAGAAGGATCTTTTTGATGGCAGTCAATTAAGCCCAAAGGCTGTGGAGAAACCTGAAAAAATACGCTCCTCTATTGATCCATCAACTCAGACATGTAAGAATTTTTCAGCACCAGCTGAACAGTTGGCAGCAAGCATTCGCCATGGCCTTGAAATTATTGGTAGTCAGCGCCATAGTTCAGCTTTGAGGAGATCAGCATTTAGGTTTTCACTGAAACCTTCAGAGTCGAGGCAGATTTTGCCAGTTCCCAAAGTTGATGCTGGTGTGCAAACTGTTGATGAGTTACCACAAGAAGATTCAGTGGACTATATTTGTAATAATTGCAAGAACAGAATGGAGCTAGAGGGTAAAGAGGCTAATGAACTTTCTAAAATGGAATTAGTACCTGTGGATGCATCAGAGCCTGCTGACAAATCCAGGATGCAGGTTCCAAAAGCTGTAGAAAAGGTGTTAGCCGGAGCCATCCGCAGAGAAATGGCATTAGAAGACATATGTGCCAAGAAAACTTCTGAGATAATGCAGCTTAACCGTTTGGTGCAACAGTACAAGCATGAGAGGGAATGCAATGCTATTATATCCCAGACAAGGGAGGATAAGATTCTTCGCCTTGAGAGCCTTATGGATGGTGTTTTACCCACTGAGGAGTTCATGGAGGAAGAACTAGTGTCCCTCACACATGATTACAAGCTTTTGAAGGAGAAATACGAGAATCATCCAGAGCTTTTGAGGACAAAGATCGAGTTAAAAAAAGTTCAAGATGAGCTGGAAAATTTACGTAACTTTAATGATATGGGTGAAAGAGAGGTGTTGTTGGAAGAGATTCAAGATTTAAGAAGCCAGCTACAGTATTATGTGGACTCCTCATCCACATCATCCCGCACACGAAACTCTGTGCTGCAATTGACCTATTCCTGTGAGCCAAAGTTGGCCCCTCTTAGTACAATTCAAGAGTCAAATGAGGAAAGCATTGAGCAGAAATTTGAACAGGAGAGGAAACAGTGGACTGAGGTAGAGAGTACGTGGATTTCTCTTTCTGAGGAATTAAGAACTGAACTTGAGGCTAGCAGATCACTGGTTGAAAAGACAAAGCAGGAATTAGAAACAGAGAAGAAATGTGCCGAAGAGCTCAAGGAAGCAATGCAACGGGCAATGGAGGGGCAGTCGCGAATGTTGGAACAGTATGCAGATTTGGAAGAGAAACATATGGAACTTCTTATAAGGCACAGGAAGATCCGGGATGGAGTGGAAGATGTAAAGAAAGCAGCTGCTAAGGCTGGAGTTAGGGGTGCTGAGTCCAAGTTTATAAATTCTCTCGCTGCAGAAATTACAACACTGAGATTAGAAAGAGAAAGAGAAAGGAGATATCTGAGGGATGAAAATAAGGGGCTTCAGGCTCAATTACAGGATACTGCTGAAGCTGTACAGGCTGCGGGTGAATTGCTGATACGACTCAAAGAAGCAGATGAGGCTGTTGCTATTGCTCAGAGACAAGCTACAGAGGCCCAGCAAGAATCAAACAAGGCTTACATCACGATTGAAAAATTGAAGAAAAAACATGAAAAGGAGATAAGCAGTCTTAATGAGCTCCTTGCTCAGTCTCAGTTACCCAAAGAAGCAATCCGACCGGCTTATGATGAAGATTCTCATATCGCAAAATATGACGTAGGTGAACCCCATAGTTTGAGTGATCAGCGGTGGAAAGAGGAATTCGAGCCATTCTACAATGGGGAAGATGGCGAGTTACGAAAACTTGCTGAACCCTCATCATGGTTCTCTGGTTACGACCGATGCAACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

1330

Amino Acids

148.81

Weight (kDa)

5.33

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	96 - 243	5.5e-21	Microtubule binding
Kinesin	PF00225	122 - 431	1.8e-106	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23670 AT3G23670 AT4G14150
fragaria_vesca	FvH4_4g12770 FvH4_4g12770
malus_domestica	MD04G1023400.v1.1 MD13G1280700.v1.1
prunus_persica	Prupe.1G173100_v2.0.a1
pyrus_communis	pycom04g01990 pycom13g29270
rosa_chinensis	RchiOBHm_Chr4g0412101
rosa_laevigata	RLG00000008323
rosa_multiflora	Rmu_co8521685.1_g000001 Rmu_sc0004447.1_g000004
rosa_roxburghii	Rroxscaffold_5G00356370
rosa_rugosa	Rorug04G0106600
rosa_samantha	Rh4AG171300 Rh4BG170100 Rh4CG182200 Rh4DG165600
rosa_wichuraiana	Rw4G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3410, 3497
Acc36I	ACCTGC	1 cut(s)	2608
AccII	CGCG	5 cut(s)	19, 94, 122, 176, 3358
AclWI	GGATC	6 cut(s)	725, 738, 1012, 2208, 2264, 3418
AcoI	YGGCCR	4 cut(s)	177, 206, 308, 408
AcsI	RAATTY	8 cut(s)	571, 1090, 1113, 2293, 2962, 3170, 3499, 3899
AcuI	CTGAAG	7 cut(s)	117, 734, 1160, 1956, 2397, 3566, 3627
AdeI	CACNNNGTG	2 cut(s)	540, 2048
AfeI	AGCGCT	1 cut(s)	1043
AfiI	CCNNNNNNNGG	5 cut(s)	74, 2020, 2778, 2779, 3960
AflIII	ACRYGT	1 cut(s)	2285
AhlI	ACTAGT	2 cut(s)	875, 2854
AjnI	CCWGG	4 cut(s)	288, 1157, 1816, 2609
AleI	CACNNNNGTG	1 cut(s)	1344
AloI	GAACNNNNNNTCC	2 cut(s)	853, 885
Alw21I	GWGCWC	2 cut(s)	3321, 3780
Alw26I	GTCTC	5 cut(s)	32, 1188, 1244, 3673, 3795
AlwI	GGATC	6 cut(s)	725, 738, 1012, 2208, 2264, 3418
AlwNI	CAGNNNCTG	1 cut(s)	2597
Ama87I	CYCGRG	2 cut(s)	239, 611
Aor51HI	AGCGCT	1 cut(s)	1043
AoxI	GGCC	8 cut(s)	150, 177, 206, 308, 408, 2338, 3120, 3693
ApoI	RAATTY	8 cut(s)	571, 1090, 1113, 2293, 2962, 3170, 3499, 3899
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
Asp700I	GAANNNNTTC	1 cut(s)	3012
AspA2I	CCTAGG	2 cut(s)	83, 2138
AspLEI	GCGC	5 cut(s)	21, 124, 1014, 1044, 2364
AspS9I	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3121, 3694
AsuC2I	CCSGG	2 cut(s)	205, 3428
AsuHPI	GGTGA	8 cut(s)	374, 1526, 1832, 2127, 2155, 2999, 3638, 3872
AsuNHI	GCTAGC	1 cut(s)	3254
AvaI	CYCGRG	2 cut(s)	239, 611
AvaII	GGWCC	4 cut(s)	88, 545, 1814, 2169
AvrII	CCTAGG	2 cut(s)	83, 2138
BaeI	ACNNNNGTAYC	8 cut(s)	656, 689, 928, 961, 1725, 1758, 1815, 1848
BamHI	GGATCC	1 cut(s)	730
BanII	GRGCYC	3 cut(s)	2034, 3321, 3780
BarI	GAAGNNNNNNTAC	2 cut(s)	2879, 2911
BauI	CACGAG	1 cut(s)	1972
BbsI	GAAGAC	3 cut(s)	123, 740, 2685
Bbv12I	GWGCWC	2 cut(s)	3321, 3780
BceAI	ACGGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	4 cut(s)	290, 1159, 1818, 2611
BciVI	GTATCC	1 cut(s)	3592
BclI	TGATCA	2 cut(s)	583, 3880
BcnI	CCSGG	2 cut(s)	205, 3428
BcoDI	GTCTC	5 cut(s)	32, 1188, 1244, 3673, 3795
BcuI	ACTAGT	2 cut(s)	875, 2854
BfmI	CTRYAG	6 cut(s)	1147, 1376, 2631, 3035, 3510, 3687
BfoI	RGCGCY	3 cut(s)	1015, 1045, 2365
BfuAI	ACCTGC	1 cut(s)	2608
BfuI	GTATCC	1 cut(s)	3592
BglI	GCCNNNNNGGC	1 cut(s)	205
BglII	AGATCT	2 cut(s)	136, 721
BlnI	CCTAGG	2 cut(s)	83, 2138
BlpI	GCTNAGC	1 cut(s)	1275
Bme1390I	CCNGG	6 cut(s)	205, 290, 1159, 1818, 2611, 3428
Bme18I	GGWCC	4 cut(s)	88, 545, 1814, 2169
BmeT110I	CYCGRG	2 cut(s)	239, 611
BmgT120I	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3121, 3694
BmiI	GGNNCC	9 cut(s)	48, 89, 90, 271, 546, 732, 2622, 2653, 3123
BmrFI	CCNGG	6 cut(s)	205, 290, 1159, 1818, 2611, 3428
BmrI	ACTGGG	2 cut(s)	49, 2121
BmtI	GCTAGC	1 cut(s)	3258
BmuI	ACTGGG	2 cut(s)	49, 2121
BpiI	GAAGAC	3 cut(s)	123, 740, 2685
BplI	GAGNNNNNCTC	2 cut(s)	1258, 1290
BpmI	CTGGAG	1 cut(s)	3489
Bpu10I	CCTNAGC	1 cut(s)	3462
Bpu1102I	GCTNAGC	1 cut(s)	1275
BpuEI	CTTGAG	4 cut(s)	653, 2822, 3269, 3305
BpuMI	CCSGG	2 cut(s)	205, 3428
Bsa29I	ATCGAT	1 cut(s)	1069
BsaAI	YACGTR	2 cut(s)	2969, 3213
BsaBI	GATNNNNATC	3 cut(s)	735, 1100, 1335
BsaJI	CCNNGG	8 cut(s)	83, 92, 174, 203, 265, 1284, 2138, 2335
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 2020, 2778, 2779, 3960
Bse118I	RCCGGY	2 cut(s)	1990, 3817
Bse3DI	GCAATG	5 cut(s)	1215, 1624, 2764, 3336, 3348
Bse8I	GATNNNNATC	3 cut(s)	735, 1100, 1335
BseBI	CCWGG	4 cut(s)	290, 1159, 1818, 2611
BseCI	ATCGAT	1 cut(s)	1069
BseDI	CCNNGG	8 cut(s)	83, 92, 174, 203, 265, 1284, 2138, 2335
BseJI	GATNNNNATC	3 cut(s)	735, 1100, 1335
BseLI	CCNNNNNNNGG	5 cut(s)	74, 2020, 2778, 2779, 3960
BseMI	GCAATG	5 cut(s)	1215, 1624, 2764, 3336, 3348
BseRI	GAGGAG	7 cut(s)	653, 1535, 1960, 2251, 2395, 2849, 3043
BseX3I	CGGCCG	2 cut(s)	206, 308
BseYI	CCCAGC	3 cut(s)	479, 1034, 3696
BsgI	GTGCAG	2 cut(s)	368, 1050
Bsh1236I	CGCG	5 cut(s)	19, 94, 122, 176, 3358
Bsh1285I	CGRYCG	4 cut(s)	209, 311, 3818, 3979
BshFI	GGCC	8 cut(s)	152, 179, 208, 310, 410, 2340, 3122, 3695
BshVI	ATCGAT	1 cut(s)	1069
BsiEI	CGRYCG	4 cut(s)	209, 311, 3818, 3979
BsiHKAI	GWGCWC	2 cut(s)	3321, 3780
BsiHKCI	CYCGRG	2 cut(s)	239, 611
BsiSI	CCGG	7 cut(s)	75, 205, 282, 1991, 2649, 3427, 3818
BslFI	GGGAC	2 cut(s)	74, 2845
BslI	CCNNNNNNNGG	5 cut(s)	74, 2020, 2778, 2779, 3960
BsmAI	GTCTC	5 cut(s)	32, 1188, 1244, 3673, 3795
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	74, 2845
BsmI	GAATGC	5 cut(s)	309, 1201, 1408, 2328, 2759
BsnI	GGCC	8 cut(s)	152, 179, 208, 310, 410, 2340, 3122, 3695
BsoBI	CYCGRG	2 cut(s)	239, 611
Bsp1286I	GDGCHC	3 cut(s)	2034, 3321, 3780
Bsp1407I	TGTACA	1 cut(s)	3613
Bsp1720I	GCTNAGC	1 cut(s)	1275
Bsp19I	CCATGG	2 cut(s)	265, 2335
Bsp68I	TCGCGA	1 cut(s)	3358
BspANI	GGCC	8 cut(s)	152, 179, 208, 310, 410, 2340, 3122, 3695
BspDI	ATCGAT	1 cut(s)	1069
BspFNI	CGCG	5 cut(s)	19, 94, 122, 176, 3358
BspHI	TCATGA	1 cut(s)	2079
BspLI	GGNNCC	9 cut(s)	48, 89, 90, 271, 546, 732, 2622, 2653, 3123
BspMAI	CTGCAG	1 cut(s)	3514
BspMI	ACCTGC	1 cut(s)	2608
BspOI	GCTAGC	1 cut(s)	3258
BspPI	GGATC	6 cut(s)	725, 738, 1012, 2208, 2264, 3418
BspQI	GCTCTTC	1 cut(s)	3309
BsrDI	GCAATG	5 cut(s)	1215, 1624, 2764, 3336, 3348
BsrFI	RCCGGY	2 cut(s)	1990, 3817
BsrGI	TGTACA	1 cut(s)	3613
BssAI	RCCGGY	2 cut(s)	1990, 3817
BssECI	CCNNGG	8 cut(s)	83, 92, 174, 203, 265, 1284, 2138, 2335
BssSI	CACGAG	1 cut(s)	1972
BssT1I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2335
Bst2BI	CACGAG	1 cut(s)	1972
Bst2UI	CCWGG	4 cut(s)	290, 1159, 1818, 2611
Bst6I	CTCTTC	6 cut(s)	182, 1857, 1932, 3003, 3309, 3381
BstAPI	GCANNNNNTGC	2 cut(s)	1412, 2431
BstAUI	TGTACA	1 cut(s)	3613
BstBAI	YACGTR	2 cut(s)	2969, 3213
BstDSI	CCRYGG	4 cut(s)	92, 174, 265, 2335
BstFNI	CGCG	5 cut(s)	19, 94, 122, 176, 3358
BstH2I	RGCGCY	3 cut(s)	1015, 1045, 2365
BstHHI	GCGC	5 cut(s)	21, 124, 1014, 1044, 2364
BstMAI	GTCTC	5 cut(s)	32, 1188, 1244, 3673, 3795
BstMCI	CGRYCG	4 cut(s)	209, 311, 3818, 3979
BstNI	CCWGG	4 cut(s)	290, 1159, 1818, 2611
BstNSI	RCATGY	2 cut(s)	656, 2289
BstSCI	CCNGG	6 cut(s)	203, 288, 1157, 1816, 2609, 3426
BstSFI	CTRYAG	6 cut(s)	1147, 1376, 2631, 3035, 3510, 3687
BstSNI	TACGTA	1 cut(s)	2969
BstUI	CGCG	5 cut(s)	19, 94, 122, 176, 3358
BstV2I	GAAGAC	3 cut(s)	123, 740, 2685
BstX2I	RGATCY	5 cut(s)	136, 721, 730, 2200, 3423
BstXI	CCANNNNNNTGG	1 cut(s)	1583
BstYI	RGATCY	5 cut(s)	136, 721, 730, 2200, 3423
BstZI	CGGCCG	2 cut(s)	206, 308
Bsu15I	ATCGAT	1 cut(s)	1069
BsuI	GTATCC	1 cut(s)	3592
BsuRI	GGCC	8 cut(s)	152, 179, 208, 310, 410, 2340, 3122, 3695
BsuTUI	ATCGAT	1 cut(s)	1069
BtgI	CCRYGG	4 cut(s)	92, 174, 265, 2335
BtuMI	TCGCGA	1 cut(s)	3358
BveI	ACCTGC	1 cut(s)	2608
CaiI	CAGNNNCTG	1 cut(s)	2597
CciI	TCATGA	1 cut(s)	2079
CciNI	GCGGCCGC	1 cut(s)	308
CfoI	GCGC	5 cut(s)	21, 124, 1014, 1044, 2364
Cfr10I	RCCGGY	2 cut(s)	1990, 3817
Cfr13I	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3121, 3694
Cfr42I	CCGCGG	2 cut(s)	95, 177
ClaI	ATCGAT	1 cut(s)	1069
CseI	GACGC	1 cut(s)	605
CspCI	CAANNNNNGTGG	2 cut(s)	2217, 2252
DraI	TTTAAA	1 cut(s)	970
DraIII	CACNNNGTG	2 cut(s)	540, 2048
EaeI	YGGCCR	4 cut(s)	177, 206, 308, 408
EagI	CGGCCG	2 cut(s)	206, 308
Eam1104I	CTCTTC	6 cut(s)	182, 1857, 1932, 3003, 3309, 3381
EarI	CTCTTC	6 cut(s)	182, 1857, 1932, 3003, 3309, 3381
Ecl136II	GAGCTC	2 cut(s)	3319, 3778
EclXI	CGGCCG	2 cut(s)	206, 308
Eco105I	TACGTA	1 cut(s)	2969
Eco130I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2335
Eco24I	GRGCYC	3 cut(s)	2034, 3321, 3780
Eco32I	GATATC	1 cut(s)	3557
Eco47I	GGWCC	4 cut(s)	88, 545, 1814, 2169
Eco47III	AGCGCT	1 cut(s)	1043
Eco52I	CGGCCG	2 cut(s)	206, 308
Eco53kI	GAGCTC	2 cut(s)	3319, 3778
Eco57I	CTGAAG	7 cut(s)	117, 734, 1160, 1956, 2397, 3566, 3627
Eco88I	CYCGRG	2 cut(s)	239, 611
EcoICRI	GAGCTC	2 cut(s)	3319, 3778
EcoO109I	RGGNCCY	4 cut(s)	88, 545, 1814, 2169
EcoRI	GAATTC	1 cut(s)	3899
EcoRII	CCWGG	4 cut(s)	288, 1157, 1816, 2609
EcoRV	GATATC	1 cut(s)	3557
EcoT14I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2335
EcoT22I	ATGCAT	2 cut(s)	424, 2590
EcoT38I	GRGCYC	3 cut(s)	2034, 3321, 3780
ErhI	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2335
Esp3I	CGTCTC	1 cut(s)	32
FaqI	GGGAC	2 cut(s)	74, 2845
FauI	CCCGC	7 cut(s)	27, 99, 181, 1048, 1697, 3077, 3616
FauNDI	CATATG	2 cut(s)	2684, 3396
FbaI	TGATCA	2 cut(s)	583, 3880
FriOI	GRGCYC	3 cut(s)	2034, 3321, 3780
GlaI	GCGC	5 cut(s)	20, 123, 1013, 1043, 2363
GsaI	CCCAGC	3 cut(s)	483, 1038, 3700
GsuI	CTGGAG	1 cut(s)	3489
HaeII	RGCGCY	3 cut(s)	1015, 1045, 2365
HaeIII	GGCC	8 cut(s)	152, 179, 208, 310, 410, 2340, 3122, 3695
HapII	CCGG	7 cut(s)	75, 205, 282, 1991, 2649, 3427, 3818
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	5 cut(s)	21, 124, 1014, 1044, 2364
Hin6I	GCGC	5 cut(s)	19, 122, 1012, 1042, 2362
HinP1I	GCGC	5 cut(s)	19, 122, 1012, 1042, 2362
HincII	GTYRAC	2 cut(s)	1023, 1164
HindII	GTYRAC	2 cut(s)	1023, 1164
HindIII	AAGCTT	2 cut(s)	1450, 2879
HpaI	GTTAAC	1 cut(s)	1023
HpaII	CCGG	7 cut(s)	75, 205, 282, 1991, 2649, 3427, 3818
HphI	GGTGA	8 cut(s)	374, 1526, 1832, 2127, 2155, 2999, 3638, 3872
Hpy166II	GTNNAC	9 cut(s)	809, 1023, 1164, 1960, 2146, 2497, 3049, 3195, 3863
Hpy8I	GTNNAC	9 cut(s)	809, 1023, 1164, 1960, 2146, 2497, 3049, 3195, 3863
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4IV	ACGT	3 cut(s)	2968, 3212, 3855
HpySE526I	ACGT	3 cut(s)	2968, 3212, 3855
HspAI	GCGC	5 cut(s)	19, 122, 1012, 1042, 2362
KflI	GGGWCCC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	583, 3880
KspAI	GTTAAC	1 cut(s)	1023
KspI	CCGCGG	2 cut(s)	95, 177
LguI	GCTCTTC	1 cut(s)	3309
MaeII	ACGT	3 cut(s)	2968, 3212, 3855
MaeIII	GTNAC	8 cut(s)	826, 1711, 2098, 2475, 2969, 3795, 3933, 3971
MfeI	CAATTG	1 cut(s)	3092
MflI	RGATCY	5 cut(s)	136, 721, 730, 2200, 3423
MhlI	GDGCHC	3 cut(s)	2034, 3321, 3780
MmeI	TCCRAC	6 cut(s)	543, 708, 1253, 2985, 3345, 3838
Mph1103I	ATGCAT	2 cut(s)	424, 2590
MroXI	GAANNNNTTC	1 cut(s)	3012
MslI	CAYNNNNRTG	2 cut(s)	1344, 1503
MspA1I	CMGCKG	7 cut(s)	94, 176, 196, 1034, 2309, 3458, 3886
MspI	CCGG	7 cut(s)	75, 205, 282, 1991, 2649, 3427, 3818
MspR9I	CCNGG	6 cut(s)	205, 290, 1159, 1818, 2611, 3428
MunI	CAATTG	1 cut(s)	3092
Mva1269I	GAATGC	5 cut(s)	309, 1201, 1408, 2328, 2759
MvaI	CCWGG	4 cut(s)	290, 1159, 1818, 2611
MvnI	CGCG	5 cut(s)	19, 94, 122, 176, 3358
NciI	CCSGG	2 cut(s)	205, 3428
NcoI	CCATGG	2 cut(s)	265, 2335
NdeI	CATATG	2 cut(s)	2684, 3396
NheI	GCTAGC	1 cut(s)	3254
NlaIV	GGNNCC	9 cut(s)	48, 89, 90, 271, 546, 732, 2622, 2653, 3123
NmuCI	GTSAC	2 cut(s)	826, 1711
NotI	GCGGCCGC	1 cut(s)	308
NruI	TCGCGA	1 cut(s)	3358
NsiI	ATGCAT	2 cut(s)	424, 2590
NspI	RCATGY	2 cut(s)	656, 2289
OliI	CACNNNNGTG	1 cut(s)	1344
PaeI	GCATGC	1 cut(s)	656
PaeR7I	CTCGAG	2 cut(s)	239, 611
PagI	TCATGA	1 cut(s)	2079
PciI	ACATGT	1 cut(s)	2285
PciSI	GCTCTTC	1 cut(s)	3309
PctI	GAATGC	5 cut(s)	309, 1201, 1408, 2328, 2759
PdmI	GAANNNNTTC	1 cut(s)	3012
PfoI	TCCNGGA	2 cut(s)	2609, 3426
Ppu21I	YACGTR	2 cut(s)	2969, 3213
PpuMI	RGGWCCY	4 cut(s)	88, 545, 1814, 2169
PscI	ACATGT	1 cut(s)	2285
PsiI	TTATAA	2 cut(s)	3410, 3497
Psp124BI	GAGCTC	2 cut(s)	3321, 3780
Psp5II	RGGWCCY	4 cut(s)	88, 545, 1814, 2169
Psp6I	CCWGG	4 cut(s)	288, 1157, 1816, 2609
PspFI	CCCAGC	3 cut(s)	479, 1034, 3696
PspGI	CCWGG	4 cut(s)	288, 1157, 1816, 2609
PspN4I	GGNNCC	9 cut(s)	48, 89, 90, 271, 546, 732, 2622, 2653, 3123
PspPI	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3121, 3694
PspPPI	RGGWCCY	4 cut(s)	88, 545, 1814, 2169
PstI	CTGCAG	1 cut(s)	3514
PstNI	CAGNNNCTG	1 cut(s)	2597
PsuI	RGATCY	5 cut(s)	136, 721, 730, 2200, 3423
PvuII	CAGCTG	3 cut(s)	1034, 2309, 3458
RruI	TCGCGA	1 cut(s)	3358
RseI	CAYNNNNRTG	2 cut(s)	1344, 1503
SacI	GAGCTC	2 cut(s)	3321, 3780
SacII	CCGCGG	2 cut(s)	95, 177
SapI	GCTCTTC	1 cut(s)	3309
Sau96I	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3121, 3694
ScrFI	CCNGG	6 cut(s)	205, 290, 1159, 1818, 2611, 3428
SduI	GDGCHC	3 cut(s)	2034, 3321, 3780
SfcI	CTRYAG	6 cut(s)	1147, 1376, 2631, 3035, 3510, 3687
Sfr274I	CTCGAG	2 cut(s)	239, 611
Sfr303I	CCGCGG	2 cut(s)	95, 177
SgrBI	CCGCGG	2 cut(s)	95, 177
SinI	GGWCC	4 cut(s)	88, 545, 1814, 2169
SlaI	CTCGAG	2 cut(s)	239, 611
SmiMI	CAYNNNNRTG	2 cut(s)	1344, 1503
SmlI	CTYRAG	6 cut(s)	239, 611, 668, 2801, 3248, 3320
SmoI	CTYRAG	6 cut(s)	239, 611, 668, 2801, 3248, 3320
SnaBI	TACGTA	1 cut(s)	2969
SpeI	ACTAGT	2 cut(s)	875, 2854
SphI	GCATGC	1 cut(s)	656
SspI	AATATT	1 cut(s)	1903
SstI	GAGCTC	2 cut(s)	3321, 3780
StyD4I	CCNGG	6 cut(s)	203, 288, 1157, 1816, 2609, 3426
StyI	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2335
TaiI	ACGT	3 cut(s)	2971, 3215, 3858
TaqII	GACCGA	1 cut(s)	3993
TatI	WGTACW	5 cut(s)	1259, 1957, 2736, 3131, 3613
TauI	GCSGC	8 cut(s)	19, 179, 202, 211, 214, 310, 313, 1436
TseFI	GTSAC	2 cut(s)	826, 1711
Tsp45I	GTSAC	2 cut(s)	826, 1711
TspGWI	ACGGA	5 cut(s)	59, 117, 247, 250, 522
VpaK11BI	GGWCC	4 cut(s)	88, 545, 1814, 2169
XapI	RAATTY	8 cut(s)	571, 1090, 1113, 2293, 2962, 3170, 3499, 3899
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	2 cut(s)	656, 2289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1022
XhoI	CTCGAG	2 cut(s)	239, 611
XmaJI	CCTAGG	2 cut(s)	83, 2138
XmnI	GAANNNNTTC	1 cut(s)	3012
Zsp2I	ATGCAT	2 cut(s)	424, 2590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.