Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000711.1

Orthogroup ID

OG0012975

Physical Location & Seq

Genomic Coordinates Forward (+)

277593 .. 278656

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000711.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgggcaaaatggacaacaaagaaaaaagattgaagtttcttcaagatcttgttcctggttgcaacaaggtaactgggaaagctgtgatgctagatgaaatcattaactatgttcagtcgttgcagcgccaagtcgagtttctttcaatgaaattgtcaactgtgaatcctagaatggatttgaacatggaggctctcctgtcaaaggaaatccttcaatctcaaggagctttacaaaatgctctttaccaattagattccgcagtccccgcatcatttccttttgggtatcaaccccagcaacttccagctttacatagcaacggcatctctaatgagacagagacgcagtttccagtaactttaaatgcctcactgactcaaaattcaaccatgcaatcacctgcttttgatagatttggtggagcaaatcttcaggctccacaattttttgaggatgatctccaaagtatggttcagatgggttttggccagatcgagcagcagagccttcatggctcaggggcttcagctcatatgaaagttgagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

184

Amino Acids

20.4

Weight (kDa)

5.29

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23690
fragaria_vesca	FvH4_4g12760 FvH4_4g12760
malus_domestica	MD04G1023500.v1.1
prunus_persica	Prupe.1G173300_v2.0.a1 Prupe.1G173300_v2.0.a1
pyrus_communis	pycom04g02000
rosa_chinensis	RchiOBHm_Chr4g0412071
rosa_laevigata	RLG00000008324
rosa_multiflora	Rmu_sc0000711.1_g000061 Rmu_sc0000711.1_g000062
rosa_roxburghii	Rroxscaffold_5G00356350
rosa_rugosa	Rorug04G0106600
rosa_samantha	Rh4AG171200 Rh4BG170000 Rh4CG182100 Rh4DG165500
rosa_wichuraiana	Rw4G014270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
Acc36I	ACCTGC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	472
AciI	CCGC	2 cut(s)	261, 270
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	419, 513
AfiI	CCNNNNNNNGG	2 cut(s)	205, 472
AgsI	TTSAA	6 cut(s)	34, 44, 147, 184, 218, 390
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	4 cut(s)	123, 155, 459, 491
AluBI	AGCT	4 cut(s)	83, 230, 311, 533
AluI	AGCT	4 cut(s)	83, 230, 311, 533
Alw26I	GTCTC	2 cut(s)	332, 338
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	124, 502
ApoI	RAATTY	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	136, 514
BccI	CCATC	1 cut(s)	475
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	332, 338
BfaI	CTAG	2 cut(s)	92, 171
BfoI	RGCGCY	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	516
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	2 cut(s)	125, 503
BlsI	GCNGC	2 cut(s)	126, 504
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	78, 281, 336
BmuI	ACTGGG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 472
Bse1I	ACTGG	2 cut(s)	79, 356
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	205, 472
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	79, 356
BseXI	GCAGC	2 cut(s)	136, 514
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	205, 472
BsmAI	GTCTC	2 cut(s)	332, 338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	492
Bsp143I	GATC	3 cut(s)	46, 460, 495
BspACI	CCGC	2 cut(s)	261, 270
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	79, 356
BssMI	GATC	3 cut(s)	46, 460, 495
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	520
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	49, 463, 498
BstMAI	GTCTC	2 cut(s)	332, 338
BstMBI	GATC	3 cut(s)	46, 460, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 516
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	136, 514
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	129
CseI	GACGC	1 cut(s)	355
CviAII	CATG	3 cut(s)	187, 394, 515
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	3 cut(s)	48, 462, 497
DpnII	GATC	3 cut(s)	46, 460, 495
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	419, 513
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	3 cut(s)	190, 397, 518
FaiI	YATR	8 cut(s)	111, 188, 318, 395, 473, 516, 537, 539
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	186, 393, 514
FauI	CCCGC	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	125, 503
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	125, 503
FspBI	CTAG	2 cut(s)	92, 171
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	125, 503
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	492
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	190, 397, 518
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	3 cut(s)	166, 257, 379
HphI	GGTGA	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	224, 521
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	3 cut(s)	63, 124, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 516
HpyF3I	CTNAG	1 cut(s)	520
Hsp92II	CATG	3 cut(s)	190, 397, 518
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	46, 460, 495
LmnI	GCTCC	3 cut(s)	227, 425, 445
Lsp1109I	GCAGC	2 cut(s)	136, 514
LweI	GCATC	3 cut(s)	78, 281, 336
MaeI	CTAG	2 cut(s)	92, 171
MaeIII	GTNAC	2 cut(s)	70, 358
MalI	GATC	3 cut(s)	48, 462, 497
MboI	GATC	3 cut(s)	46, 460, 495
MboII	GAAGA	2 cut(s)	32, 425
MflI	RGATCY	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	4 cut(s)	152, 251, 385, 446
MluNI	TGGCCA	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	3 cut(s)	184, 382, 448
Mox20I	TGGCCA	1 cut(s)	492
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	3 cut(s)	105, 365, 553
Msp20I	TGGCCA	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	269, 516
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	3 cut(s)	46, 460, 495
NlaIII	CATG	3 cut(s)	190, 397, 518
NlaIV	GGNNCC	1 cut(s)	441
PaqCI	CACCTGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	166, 257
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	126, 504
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	105, 365, 553
SatI	GCNGC	2 cut(s)	125, 503
Sau3AI	GATC	3 cut(s)	46, 460, 495
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	6 cut(s)	72, 85, 232, 313, 406, 535
SfaNI	GCATC	3 cut(s)	78, 281, 336
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	4 cut(s)	152, 251, 385, 446
SsiI	CCGC	2 cut(s)	261, 270
SspMI	CTAG	2 cut(s)	92, 171
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	135, 498
TasI	AATT	4 cut(s)	152, 251, 385, 446
TfiI	GAWTC	2 cut(s)	166, 257
Tru1I	TTAA	3 cut(s)	105, 365, 553
Tru9I	TTAA	3 cut(s)	105, 365, 553
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	2 cut(s)	124, 502
TspDTI	ATGAA	4 cut(s)	111, 164, 503, 554
TspRI	CASTG	1 cut(s)	381
Van91I	CCANNNNNTGG	1 cut(s)	472
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	2 cut(s)	92, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.