transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23690 |
| fragaria_vesca | FvH4_4g12760 FvH4_4g12760 |
| malus_domestica | MD04G1023500.v1.1 |
| prunus_persica | Prupe.1G173300_v2.0.a1 Prupe.1G173300_v2.0.a1 |
| pyrus_communis | pycom04g02000 |
| rosa_chinensis | RchiOBHm_Chr4g0412071 |
| rosa_laevigata | RLG00000008324 |
| rosa_multiflora | Rmu_sc0000711.1_g000061 Rmu_sc0000711.1_g000062 |
| rosa_roxburghii | Rroxscaffold_5G00356350 |
| rosa_rugosa | Rorug04G0106600 |
| rosa_samantha | Rh4AG171200 Rh4BG170000 Rh4CG182100 Rh4DG165500 |
| rosa_wichuraiana | Rw4G014270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1253 |
| Acc36I | ACCTGC | 2 cut(s) | 529, 711 |
| Acc65I | GGTACC | 1 cut(s) | 1434 |
| AccB1I | GGYRCC | 2 cut(s) | 451, 1434 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 419 |
| AciI | CCGC | 6 cut(s) | 188, 201, 212, 222, 225, 1442 |
| AclWI | GGATC | 6 cut(s) | 140, 144, 383, 652, 784, 790 |
| AcoI | YGGCCR | 1 cut(s) | 1639 |
| AcsI | RAATTY | 4 cut(s) | 694, 713, 940, 1184 |
| AcuI | CTGAAG | 1 cut(s) | 1662 |
| AcyI | GRCGYC | 1 cut(s) | 191 |
| AfaI | GTAC | 2 cut(s) | 1263, 1436 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 419, 689, 690, 805, 843, 849, 1016 |
| AflIII | ACRYGT | 1 cut(s) | 306 |
| AjnI | CCWGG | 6 cut(s) | 418, 469, 684, 799, 842, 1204 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 574, 606, 1272, 1304 |
| Alw21I | GWGCWC | 2 cut(s) | 75, 170 |
| Alw26I | GTCTC | 1 cut(s) | 1484 |
| AlwI | GGATC | 6 cut(s) | 140, 144, 383, 652, 784, 790 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 704, 788, 1450 |
| AoxI | GGCC | 2 cut(s) | 526, 1639 |
| ApoI | RAATTY | 4 cut(s) | 694, 713, 940, 1184 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 458, 490 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1152 |
| Asp718I | GGTACC | 1 cut(s) | 1434 |
| AspLEI | GCGC | 1 cut(s) | 1278 |
| AspS9I | GGNCC | 1 cut(s) | 732 |
| AsuHPI | GGTGA | 2 cut(s) | 354, 773 |
| AsuII | TTCGAA | 1 cut(s) | 1156 |
| AvaII | GGWCC | 1 cut(s) | 732 |
| AxyI | CCTNAGG | 1 cut(s) | 1077 |
| BalI | TGGCCA | 1 cut(s) | 1641 |
| BanI | GGYRCC | 2 cut(s) | 451, 1434 |
| BanII | GRGCYC | 5 cut(s) | 75, 170, 1011, 1045, 1511 |
| BauI | CACGAG | 1 cut(s) | 1371 |
| Bbv12I | GWGCWC | 2 cut(s) | 75, 170 |
| BccI | CCATC | 5 cut(s) | 212, 224, 902, 1031, 1624 |
| BciT130I | CCWGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| BcoDI | GTCTC | 1 cut(s) | 1484 |
| BfaI | CTAG | 2 cut(s) | 1241, 1479 |
| BfmI | CTRYAG | 1 cut(s) | 1029 |
| BfoI | RGCGCY | 1 cut(s) | 1279 |
| BfuAI | ACCTGC | 2 cut(s) | 529, 711 |
| BglII | AGATCT | 1 cut(s) | 1195 |
| Bme1390I | CCNGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| Bme18I | GGWCC | 1 cut(s) | 732 |
| BmgT120I | GGNCC | 1 cut(s) | 732 |
| BmiI | GGNNCC | 6 cut(s) | 35, 453, 936, 1021, 1083, 1436 |
| BmrFI | CCNGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| BmrI | ACTGGG | 1 cut(s) | 1005 |
| BmsI | GCATC | 2 cut(s) | 1227, 1482 |
| BmuI | ACTGGG | 1 cut(s) | 1005 |
| Bpu10I | CCTNAGC | 1 cut(s) | 366 |
| Bpu14I | TTCGAA | 1 cut(s) | 1156 |
| BpuEI | CTTGAG | 2 cut(s) | 184, 1569 |
| BsaHI | GRCGYC | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 4 cut(s) | 469, 684, 685, 799 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 78, 108 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 419, 689, 690, 805, 843, 849, 1016 |
| Bse1I | ACTGG | 2 cut(s) | 1011, 1228 |
| Bse21I | CCTNAGG | 1 cut(s) | 1077 |
| Bse3DI | GCAATG | 2 cut(s) | 1268, 1530 |
| BseBI | CCWGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| BseDI | CCNNGG | 4 cut(s) | 469, 684, 685, 799 |
| BseGI | GGATG | 4 cut(s) | 439, 1042, 1185, 1612 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 419, 689, 690, 805, 843, 849, 1016 |
| BseMI | GCAATG | 2 cut(s) | 1268, 1530 |
| BseMII | CTCAG | 2 cut(s) | 780, 1068 |
| BseNI | ACTGG | 2 cut(s) | 1011, 1228 |
| BshFI | GGCC | 2 cut(s) | 528, 1641 |
| BshNI | GGYRCC | 2 cut(s) | 451, 1434 |
| BsiHKAI | GWGCWC | 2 cut(s) | 75, 170 |
| BsiSI | CCGG | 1 cut(s) | 185 |
| BslFI | GGGAC | 2 cut(s) | 137, 1498 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 419, 689, 690, 805, 843, 849, 1016 |
| BsmAI | GTCTC | 1 cut(s) | 1484 |
| BsmFI | GGGAC | 2 cut(s) | 137, 1498 |
| BsnI | GGCC | 2 cut(s) | 528, 1641 |
| Bsp119I | TTCGAA | 1 cut(s) | 1156 |
| Bsp1286I | GDGCHC | 5 cut(s) | 75, 170, 1011, 1045, 1511 |
| Bsp1407I | TGTACA | 1 cut(s) | 1261 |
| Bsp143I | GATC | 8 cut(s) | 136, 145, 388, 572, 644, 776, 795, 1195 |
| BspACI | CCGC | 6 cut(s) | 188, 201, 212, 222, 225, 1442 |
| BspANI | GGCC | 2 cut(s) | 528, 1641 |
| BspCNI | CTCAG | 2 cut(s) | 781, 1069 |
| BspLI | GGNNCC | 6 cut(s) | 35, 453, 936, 1021, 1083, 1436 |
| BspMI | ACCTGC | 2 cut(s) | 529, 711 |
| BspPI | GGATC | 6 cut(s) | 140, 144, 383, 652, 784, 790 |
| BspQI | GCTCTTC | 1 cut(s) | 1350 |
| BspT104I | TTCGAA | 1 cut(s) | 1156 |
| BspT107I | GGYRCC | 2 cut(s) | 451, 1434 |
| BsrDI | GCAATG | 2 cut(s) | 1268, 1530 |
| BsrGI | TGTACA | 1 cut(s) | 1261 |
| BsrI | ACTGG | 2 cut(s) | 1011, 1228 |
| BssECI | CCNNGG | 4 cut(s) | 469, 684, 685, 799 |
| BssMI | GATC | 8 cut(s) | 136, 145, 388, 572, 644, 776, 795, 1195 |
| BssNI | GRCGYC | 1 cut(s) | 191 |
| BssSI | CACGAG | 1 cut(s) | 1371 |
| Bst2BI | CACGAG | 1 cut(s) | 1371 |
| Bst2UI | CCWGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| Bst4CI | ACNGT | 2 cut(s) | 1266, 1312 |
| Bst6I | CTCTTC | 4 cut(s) | 364, 892, 1153, 1350 |
| BstACI | GRCGYC | 1 cut(s) | 191 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1450 |
| BstAUI | TGTACA | 1 cut(s) | 1261 |
| BstBI | TTCGAA | 1 cut(s) | 1156 |
| BstC8I | GCNNGC | 3 cut(s) | 214, 599, 1544 |
| BstDEI | CTNAG | 3 cut(s) | 366, 789, 1077 |
| BstF5I | GGATG | 4 cut(s) | 439, 1042, 1185, 1612 |
| BstH2I | RGCGCY | 1 cut(s) | 1279 |
| BstHHI | GCGC | 1 cut(s) | 1278 |
| BstKTI | GATC | 8 cut(s) | 139, 148, 391, 575, 647, 779, 798, 1198 |
| BstMAI | GTCTC | 1 cut(s) | 1484 |
| BstMBI | GATC | 8 cut(s) | 136, 145, 388, 572, 644, 776, 795, 1195 |
| BstNI | CCWGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| BstNSI | RCATGY | 2 cut(s) | 310, 1546 |
| BstSCI | CCNGG | 6 cut(s) | 418, 469, 684, 799, 842, 1204 |
| BstSFI | CTRYAG | 1 cut(s) | 1029 |
| BstX2I | RGATCY | 3 cut(s) | 644, 795, 1195 |
| BstYI | RGATCY | 3 cut(s) | 644, 795, 1195 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1077 |
| BsuRI | GGCC | 2 cut(s) | 528, 1641 |
| BtgZI | GCGATG | 2 cut(s) | 190, 243 |
| BtsCI | GGATG | 4 cut(s) | 439, 1042, 1185, 1612 |
| BtsI | GCAGTG | 1 cut(s) | 1239 |
| BtsIMutI | CAGTG | 2 cut(s) | 1018, 1239 |
| BveI | ACCTGC | 2 cut(s) | 529, 711 |
| Cac8I | GCNNGC | 3 cut(s) | 214, 599, 1544 |
| CaiI | CAGNNNCTG | 3 cut(s) | 704, 788, 1450 |
| CfoI | GCGC | 1 cut(s) | 1278 |
| Cfr13I | GGNCC | 1 cut(s) | 732 |
| CseI | GACGC | 2 cut(s) | 180, 1517 |
| Csp6I | GTAC | 2 cut(s) | 1262, 1435 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 505, 540 |
| CviAII | CATG | 7 cut(s) | 52, 307, 336, 1100, 1336, 1543, 1664 |
| CviQI | GTAC | 2 cut(s) | 1262, 1435 |
| DdeI | CTNAG | 3 cut(s) | 366, 789, 1077 |
| DpnI | GATC | 8 cut(s) | 138, 147, 390, 574, 646, 778, 797, 1197 |
| DpnII | GATC | 8 cut(s) | 136, 145, 388, 572, 644, 776, 795, 1195 |
| EaeI | YGGCCR | 1 cut(s) | 1639 |
| Eam1104I | CTCTTC | 4 cut(s) | 364, 892, 1153, 1350 |
| EarI | CTCTTC | 4 cut(s) | 364, 892, 1153, 1350 |
| Ecl136II | GAGCTC | 2 cut(s) | 73, 168 |
| Eco24I | GRGCYC | 5 cut(s) | 75, 170, 1011, 1045, 1511 |
| Eco47I | GGWCC | 1 cut(s) | 732 |
| Eco53kI | GAGCTC | 2 cut(s) | 73, 168 |
| Eco57I | CTGAAG | 1 cut(s) | 1662 |
| Eco81I | CCTNAGG | 1 cut(s) | 1077 |
| EcoICRI | GAGCTC | 2 cut(s) | 73, 168 |
| EcoO109I | RGGNCCY | 1 cut(s) | 732 |
| EcoRI | GAATTC | 1 cut(s) | 694 |
| EcoRII | CCWGG | 6 cut(s) | 418, 469, 684, 799, 842, 1204 |
| EcoT38I | GRGCYC | 5 cut(s) | 75, 170, 1011, 1045, 1511 |
| FaeI | CATG | 7 cut(s) | 55, 310, 339, 1103, 1339, 1546, 1667 |
| FaqI | GGGAC | 2 cut(s) | 137, 1498 |
| FatI | CATG | 7 cut(s) | 51, 306, 335, 1099, 1335, 1542, 1663 |
| FauI | CCCGC | 1 cut(s) | 205 |
| FokI | GGATG | 4 cut(s) | 426, 1049, 1192, 1619 |
| FriOI | GRGCYC | 5 cut(s) | 75, 170, 1011, 1045, 1511 |
| FspBI | CTAG | 2 cut(s) | 1241, 1479 |
| GlaI | GCGC | 1 cut(s) | 1277 |
| HaeII | RGCGCY | 1 cut(s) | 1279 |
| HaeIII | GGCC | 2 cut(s) | 528, 1641 |
| HapII | CCGG | 1 cut(s) | 185 |
| HgaI | GACGC | 2 cut(s) | 180, 1517 |
| HhaI | GCGC | 1 cut(s) | 1278 |
| Hin1I | GRCGYC | 1 cut(s) | 191 |
| Hin1II | CATG | 7 cut(s) | 55, 310, 339, 1103, 1339, 1546, 1667 |
| Hin6I | GCGC | 1 cut(s) | 1276 |
| HinP1I | GCGC | 1 cut(s) | 1276 |
| HincII | GTYRAC | 2 cut(s) | 544, 1308 |
| HindII | GTYRAC | 2 cut(s) | 544, 1308 |
| HindIII | AAGCTT | 2 cut(s) | 599, 966 |
| HinfI | GANTC | 6 cut(s) | 155, 590, 764, 1360, 1406, 1645 |
| HpaII | CCGG | 1 cut(s) | 185 |
| HphI | GGTGA | 2 cut(s) | 354, 773 |
| Hpy166II | GTNNAC | 2 cut(s) | 544, 1308 |
| Hpy188I | TCNGA | 5 cut(s) | 141, 790, 1069, 1106, 1629 |
| Hpy188III | TCNNGA | 7 cut(s) | 282, 606, 662, 704, 1076, 1193, 1502 |
| Hpy8I | GTNNAC | 2 cut(s) | 544, 1308 |
| HpyAV | CCTTC | 7 cut(s) | 48, 444, 767, 1107, 1428, 1622, 1670 |
| HpyCH4III | ACNGT | 2 cut(s) | 1266, 1312 |
| HpyF3I | CTNAG | 3 cut(s) | 366, 789, 1077 |
| Hsp92I | GRCGYC | 1 cut(s) | 191 |
| Hsp92II | CATG | 7 cut(s) | 55, 310, 339, 1103, 1339, 1546, 1667 |
| HspAI | GCGC | 1 cut(s) | 1276 |
| KpnI | GGTACC | 1 cut(s) | 1438 |
| Kzo9I | GATC | 8 cut(s) | 136, 145, 388, 572, 644, 776, 795, 1195 |
| LguI | GCTCTTC | 1 cut(s) | 1350 |
| LmnI | GCTCC | 6 cut(s) | 99, 173, 706, 1087, 1574, 1594 |
| LweI | GCATC | 2 cut(s) | 1227, 1482 |
| MaeI | CTAG | 2 cut(s) | 1241, 1479 |
| MaeIII | GTNAC | 3 cut(s) | 832, 1219, 1548 |
| MalI | GATC | 8 cut(s) | 138, 147, 390, 574, 646, 778, 797, 1197 |
| MboI | GATC | 8 cut(s) | 136, 145, 388, 572, 644, 776, 795, 1195 |
| MboII | GAAGA | 9 cut(s) | 171, 270, 285, 351, 879, 1170, 1181, 1337, 1355 |
| MfeI | CAATTG | 3 cut(s) | 76, 118, 650 |
| MflI | RGATCY | 3 cut(s) | 644, 795, 1195 |
| MhlI | GDGCHC | 5 cut(s) | 75, 170, 1011, 1045, 1511 |
| MlsI | TGGCCA | 1 cut(s) | 1641 |
| MluNI | TGGCCA | 1 cut(s) | 1641 |
| MlyI | GAGTC | 1 cut(s) | 164 |
| MmeI | TCCRAC | 1 cut(s) | 219 |
| Mox20I | TGGCCA | 1 cut(s) | 1641 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1152 |
| MscI | TGGCCA | 1 cut(s) | 1641 |
| MseI | TTAA | 3 cut(s) | 111, 630, 903 |
| MslI | CAYNNNNRTG | 1 cut(s) | 56 |
| Msp20I | TGGCCA | 1 cut(s) | 1641 |
| MspA1I | CMGCKG | 1 cut(s) | 989 |
| MspI | CCGG | 1 cut(s) | 185 |
| MspR9I | CCNGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| MunI | CAATTG | 3 cut(s) | 76, 118, 650 |
| MvaI | CCWGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| NdeII | GATC | 8 cut(s) | 136, 145, 388, 572, 644, 776, 795, 1195 |
| NlaIII | CATG | 7 cut(s) | 55, 310, 339, 1103, 1339, 1546, 1667 |
| NlaIV | GGNNCC | 6 cut(s) | 35, 453, 936, 1021, 1083, 1436 |
| NmuCI | GTSAC | 1 cut(s) | 832 |
| NspI | RCATGY | 2 cut(s) | 310, 1546 |
| NspV | TTCGAA | 1 cut(s) | 1156 |
| PaeI | GCATGC | 1 cut(s) | 1546 |
| PasI | CCCWGGG | 1 cut(s) | 685 |
| PciI | ACATGT | 1 cut(s) | 306 |
| PciSI | GCTCTTC | 1 cut(s) | 1350 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1152 |
| PfeI | GAWTC | 5 cut(s) | 590, 764, 1360, 1406, 1645 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 419 |
| PfoI | TCCNGGA | 2 cut(s) | 418, 842 |
| PleI | GAGTC | 1 cut(s) | 163 |
| PpsI | GAGTC | 1 cut(s) | 163 |
| PpuMI | RGGWCCY | 1 cut(s) | 732 |
| PscI | ACATGT | 1 cut(s) | 306 |
| PsiI | TTATAA | 1 cut(s) | 1253 |
| Psp124BI | GAGCTC | 2 cut(s) | 75, 170 |
| Psp5II | RGGWCCY | 1 cut(s) | 732 |
| Psp6I | CCWGG | 6 cut(s) | 418, 469, 684, 799, 842, 1204 |
| PspGI | CCWGG | 6 cut(s) | 418, 469, 684, 799, 842, 1204 |
| PspN4I | GGNNCC | 6 cut(s) | 35, 453, 936, 1021, 1083, 1436 |
| PspPI | GGNCC | 1 cut(s) | 732 |
| PspPPI | RGGWCCY | 1 cut(s) | 732 |
| PstNI | CAGNNNCTG | 3 cut(s) | 704, 788, 1450 |
| PsuI | RGATCY | 3 cut(s) | 644, 795, 1195 |
| PvuII | CAGCTG | 1 cut(s) | 989 |
| RsaI | GTAC | 2 cut(s) | 1263, 1436 |
| RsaNI | GTAC | 2 cut(s) | 1262, 1435 |
| RseI | CAYNNNNRTG | 1 cut(s) | 56 |
| SacI | GAGCTC | 2 cut(s) | 75, 170 |
| SapI | GCTCTTC | 1 cut(s) | 1350 |
| SaqAI | TTAA | 3 cut(s) | 111, 630, 903 |
| Sau3AI | GATC | 8 cut(s) | 136, 145, 388, 572, 644, 776, 795, 1195 |
| Sau96I | GGNCC | 1 cut(s) | 732 |
| SchI | GAGTC | 1 cut(s) | 164 |
| ScrFI | CCNGG | 6 cut(s) | 420, 471, 686, 801, 844, 1206 |
| SduI | GDGCHC | 5 cut(s) | 75, 170, 1011, 1045, 1511 |
| SfaNI | GCATC | 2 cut(s) | 1227, 1482 |
| SfcI | CTRYAG | 1 cut(s) | 1029 |
| SfuI | TTCGAA | 1 cut(s) | 1156 |
| SinI | GGWCC | 1 cut(s) | 732 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 56 |
| SmlI | CTYRAG | 2 cut(s) | 163, 1584 |
| SmoI | CTYRAG | 2 cut(s) | 163, 1584 |
| SphI | GCATGC | 1 cut(s) | 1546 |
| SsiI | CCGC | 6 cut(s) | 188, 201, 212, 222, 225, 1442 |
| SspMI | CTAG | 2 cut(s) | 1241, 1479 |
| SstI | GAGCTC | 2 cut(s) | 75, 170 |
| StyD4I | CCNGG | 6 cut(s) | 418, 469, 684, 799, 842, 1204 |
| TaaI | ACNGT | 2 cut(s) | 1266, 1312 |
| TaqI | TCGA | 3 cut(s) | 41, 728, 1156 |
| TatI | WGTACW | 1 cut(s) | 1261 |
| TauI | GCSGC | 5 cut(s) | 191, 203, 225, 228, 1444 |
| TfiI | GAWTC | 5 cut(s) | 590, 764, 1360, 1406, 1645 |
| Tru1I | TTAA | 3 cut(s) | 111, 630, 903 |
| Tru9I | TTAA | 3 cut(s) | 111, 630, 903 |
| TscAI | CASTG | 2 cut(s) | 1018, 1239 |
| TseFI | GTSAC | 1 cut(s) | 832 |
| Tsp45I | GTSAC | 1 cut(s) | 832 |
| TspRI | CASTG | 2 cut(s) | 1018, 1239 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 419 |
| VpaK11BI | GGWCC | 1 cut(s) | 732 |
| XapI | RAATTY | 4 cut(s) | 694, 713, 940, 1184 |
| XceI | RCATGY | 2 cut(s) | 310, 1546 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1152 |
| XspI | CTAG | 2 cut(s) | 1241, 1479 |