Prupe.1G173300_v2.0.a1

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
14478736 .. 14481809
3074 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G173300.2

Sequence Viewer

Length: 1704 bp
ATGGGAAAAGACAGAACAGCCACACCCTCTTGGAACCCTTCGAGTTTTGGCATGGAAATGCAGTCCAATGAGCTCAATTGTGGCTCACAGCAGCTCCCCAATTCTCTTTTTAATGCCAATTGGGACAATTCAATGGATCAGAGCGATCCCTTTGAGTCTGCCTTGAGCTCCATTGTTTCTTCTCCGGCGGCGTCCAACGCCGCCATCGCTGCGGGCAAAGGCGGCGGCGATGGAGAAATGATTAGAGAACTAATTGGAAGATTAGGAAGCATTTGCAATTCAGGAGAAATATCTTCACACTCTTACATGTGTGGCAATAACAGCACTAACACTTCATGTTATAGCACCCCATTGAACTCTTCACCTAAGCTGAACCTGTCAATGATTGATCCACAGATGAGAGGCAATTTGCCAATTCCTGGAAATCATTTACCTTCACATCCAAGTTTGGCACCTTTTCAAGCTGACCCTGGATTTGTTGAGAGGGCTGCAAGGTTTTCCTGCTTTGGTGGTGGCAATTTTGGTGGCCTCAATGGGCAGGTCAACTTGAATGAAGCTGAATTGGCTTATAGATCAATGCCAAAAATTGATTCTGGCAAGCTTTCCAGAGCTTCCAGCAACCAATCACTTAAAGTTGCTGCTGGATCTCAATTGGGTGTTCAAGAAAGCAACAAAAGCTCTCCCCAGGGTGGGAATTCAGCTCCTGATAAGAAATTCGGCAGGTTTTCGAGGTCCTCCACCCCAGAAAATGCTGAATTAGGTGATTCAAGGGAAGGATCATCAGTTTCTGAGCAGATCCCAGGTGGGGATATGAGTGTGAAAGCAGAAAATGTGACCAATTCCAGGAAAAGGAAACCTGTTGCAAGAGGAAAAGCCAAAGAAACCTCTTCATCTCCCTCTGTTAAAGATGGCAAGGTTGTGGCAGAAAAAGAGGAACCAAATTCCAAGAGAAGCAAAACAGATGAAGCTTCTGGGAACGAAAAGGCAGCTGCAAAGGCAAAGATAGAGCCCAGTGGAGGTTCCAAAGCTACAGGGGATGGGGCTCAAAAGCAAACAAAGGATAATTCAGAGCCTCCTGAGGCTCCAAAGGACTATATTCATGTCAGAGCCAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTCGAAGAGAGAAAATTAGCGAAAGGATGAAATTTCTTCAAGATCTTGTTCCTGGTTGCAACAAGGTAACTGGAAAAGCAGTGATGCTAGATGAAATTATAAATTATGTACAGTCATTGCAGCGCCAAGTTGAGTTTCTTTCAATGAAATTGTCAACTGTAAATCCCAGAATGGATTTGAACATGGAGGCTCTTCTGTCAAAGGAGATTCTTCAATCTCGTGGGTCTTTACAAAATGCCCTTTACCAATTAGATTCTGCAATACCTTCATTCCCTTTCGGGTACCAGCCGCAGCAACTGCCACCTTTGCATAGCAGCAGCATCTCTAGTGGGACAGAGACACAATTTCCAGAGAGCCCTCTAAATGCTGCAATGCGTCAAAGTCAAGGCATGCAGTTACCCACATTTGATAGATTTGGTGGAGCAGCACCTCAAGCTCCACAATTCTTTGAGGATGACCTTCAAAGTGTGGTTCAGATGGGATTTGGCCAGATTCAGCAGGAGAGCCTTCATGGTTCAATGGCTTCAGCCCAGATGAAAGTTGAGCTATAA

Protein Analysis

568

Amino Acids

60.72

Weight (kDa)

7.06

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012975)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1253
Acc36I ACCTGC 2 cut(s) 529, 711
Acc65I GGTACC 1 cut(s) 1434
AccB1I GGYRCC 2 cut(s) 451, 1434
AccB7I CCANNNNNTGG 1 cut(s) 419
AciI CCGC 6 cut(s) 188, 201, 212, 222, 225, 1442
AclWI GGATC 6 cut(s) 140, 144, 383, 652, 784, 790
AcoI YGGCCR 1 cut(s) 1639
AcsI RAATTY 4 cut(s) 694, 713, 940, 1184
AcuI CTGAAG 1 cut(s) 1662
AcyI GRCGYC 1 cut(s) 191
AfaI GTAC 2 cut(s) 1263, 1436
AfiI CCNNNNNNNGG 7 cut(s) 419, 689, 690, 805, 843, 849, 1016
AflIII ACRYGT 1 cut(s) 306
AjnI CCWGG 6 cut(s) 418, 469, 684, 799, 842, 1204
AjuI GAANNNNNNNTTGG 4 cut(s) 574, 606, 1272, 1304
Alw21I GWGCWC 2 cut(s) 75, 170
Alw26I GTCTC 1 cut(s) 1484
AlwI GGATC 6 cut(s) 140, 144, 383, 652, 784, 790
AlwNI CAGNNNCTG 3 cut(s) 704, 788, 1450
AoxI GGCC 2 cut(s) 526, 1639
ApoI RAATTY 4 cut(s) 694, 713, 940, 1184
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
Asp700I GAANNNNTTC 1 cut(s) 1152
Asp718I GGTACC 1 cut(s) 1434
AspLEI GCGC 1 cut(s) 1278
AspS9I GGNCC 1 cut(s) 732
AsuHPI GGTGA 2 cut(s) 354, 773
AsuII TTCGAA 1 cut(s) 1156
AvaII GGWCC 1 cut(s) 732
AxyI CCTNAGG 1 cut(s) 1077
BalI TGGCCA 1 cut(s) 1641
BanI GGYRCC 2 cut(s) 451, 1434
BanII GRGCYC 5 cut(s) 75, 170, 1011, 1045, 1511
BauI CACGAG 1 cut(s) 1371
Bbv12I GWGCWC 2 cut(s) 75, 170
BccI CCATC 5 cut(s) 212, 224, 902, 1031, 1624
BciT130I CCWGG 6 cut(s) 420, 471, 686, 801, 844, 1206
BcoDI GTCTC 1 cut(s) 1484
BfaI CTAG 2 cut(s) 1241, 1479
BfmI CTRYAG 1 cut(s) 1029
BfoI RGCGCY 1 cut(s) 1279
BfuAI ACCTGC 2 cut(s) 529, 711
BglII AGATCT 1 cut(s) 1195
Bme1390I CCNGG 6 cut(s) 420, 471, 686, 801, 844, 1206
Bme18I GGWCC 1 cut(s) 732
BmgT120I GGNCC 1 cut(s) 732
BmiI GGNNCC 6 cut(s) 35, 453, 936, 1021, 1083, 1436
BmrFI CCNGG 6 cut(s) 420, 471, 686, 801, 844, 1206
BmrI ACTGGG 1 cut(s) 1005
BmsI GCATC 2 cut(s) 1227, 1482
BmuI ACTGGG 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 1156
BpuEI CTTGAG 2 cut(s) 184, 1569
BsaHI GRCGYC 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 469, 684, 685, 799
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 7 cut(s) 419, 689, 690, 805, 843, 849, 1016
Bse1I ACTGG 2 cut(s) 1011, 1228
Bse21I CCTNAGG 1 cut(s) 1077
Bse3DI GCAATG 2 cut(s) 1268, 1530
BseBI CCWGG 6 cut(s) 420, 471, 686, 801, 844, 1206
BseDI CCNNGG 4 cut(s) 469, 684, 685, 799
BseGI GGATG 4 cut(s) 439, 1042, 1185, 1612
BseLI CCNNNNNNNGG 7 cut(s) 419, 689, 690, 805, 843, 849, 1016
BseMI GCAATG 2 cut(s) 1268, 1530
BseMII CTCAG 2 cut(s) 780, 1068
BseNI ACTGG 2 cut(s) 1011, 1228
BshFI GGCC 2 cut(s) 528, 1641
BshNI GGYRCC 2 cut(s) 451, 1434
BsiHKAI GWGCWC 2 cut(s) 75, 170
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 137, 1498
BslI CCNNNNNNNGG 7 cut(s) 419, 689, 690, 805, 843, 849, 1016
BsmAI GTCTC 1 cut(s) 1484
BsmFI GGGAC 2 cut(s) 137, 1498
BsnI GGCC 2 cut(s) 528, 1641
Bsp119I TTCGAA 1 cut(s) 1156
Bsp1286I GDGCHC 5 cut(s) 75, 170, 1011, 1045, 1511
Bsp1407I TGTACA 1 cut(s) 1261
Bsp143I GATC 8 cut(s) 136, 145, 388, 572, 644, 776, 795, 1195
BspACI CCGC 6 cut(s) 188, 201, 212, 222, 225, 1442
BspANI GGCC 2 cut(s) 528, 1641
BspCNI CTCAG 2 cut(s) 781, 1069
BspLI GGNNCC 6 cut(s) 35, 453, 936, 1021, 1083, 1436
BspMI ACCTGC 2 cut(s) 529, 711
BspPI GGATC 6 cut(s) 140, 144, 383, 652, 784, 790
BspQI GCTCTTC 1 cut(s) 1350
BspT104I TTCGAA 1 cut(s) 1156
BspT107I GGYRCC 2 cut(s) 451, 1434
BsrDI GCAATG 2 cut(s) 1268, 1530
BsrGI TGTACA 1 cut(s) 1261
BsrI ACTGG 2 cut(s) 1011, 1228
BssECI CCNNGG 4 cut(s) 469, 684, 685, 799
BssMI GATC 8 cut(s) 136, 145, 388, 572, 644, 776, 795, 1195
BssNI GRCGYC 1 cut(s) 191
BssSI CACGAG 1 cut(s) 1371
Bst2BI CACGAG 1 cut(s) 1371
Bst2UI CCWGG 6 cut(s) 420, 471, 686, 801, 844, 1206
Bst4CI ACNGT 2 cut(s) 1266, 1312
Bst6I CTCTTC 4 cut(s) 364, 892, 1153, 1350
BstACI GRCGYC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 1450
BstAUI TGTACA 1 cut(s) 1261
BstBI TTCGAA 1 cut(s) 1156
BstC8I GCNNGC 3 cut(s) 214, 599, 1544
BstDEI CTNAG 3 cut(s) 366, 789, 1077
BstF5I GGATG 4 cut(s) 439, 1042, 1185, 1612
BstH2I RGCGCY 1 cut(s) 1279
BstHHI GCGC 1 cut(s) 1278
BstKTI GATC 8 cut(s) 139, 148, 391, 575, 647, 779, 798, 1198
BstMAI GTCTC 1 cut(s) 1484
BstMBI GATC 8 cut(s) 136, 145, 388, 572, 644, 776, 795, 1195
BstNI CCWGG 6 cut(s) 420, 471, 686, 801, 844, 1206
BstNSI RCATGY 2 cut(s) 310, 1546
BstSCI CCNGG 6 cut(s) 418, 469, 684, 799, 842, 1204
BstSFI CTRYAG 1 cut(s) 1029
BstX2I RGATCY 3 cut(s) 644, 795, 1195
BstYI RGATCY 3 cut(s) 644, 795, 1195
Bsu36I CCTNAGG 1 cut(s) 1077
BsuRI GGCC 2 cut(s) 528, 1641
BtgZI GCGATG 2 cut(s) 190, 243
BtsCI GGATG 4 cut(s) 439, 1042, 1185, 1612
BtsI GCAGTG 1 cut(s) 1239
BtsIMutI CAGTG 2 cut(s) 1018, 1239
BveI ACCTGC 2 cut(s) 529, 711
Cac8I GCNNGC 3 cut(s) 214, 599, 1544
CaiI CAGNNNCTG 3 cut(s) 704, 788, 1450
CfoI GCGC 1 cut(s) 1278
Cfr13I GGNCC 1 cut(s) 732
CseI GACGC 2 cut(s) 180, 1517
Csp6I GTAC 2 cut(s) 1262, 1435
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 7 cut(s) 52, 307, 336, 1100, 1336, 1543, 1664
CviQI GTAC 2 cut(s) 1262, 1435
DdeI CTNAG 3 cut(s) 366, 789, 1077
DpnI GATC 8 cut(s) 138, 147, 390, 574, 646, 778, 797, 1197
DpnII GATC 8 cut(s) 136, 145, 388, 572, 644, 776, 795, 1195
EaeI YGGCCR 1 cut(s) 1639
Eam1104I CTCTTC 4 cut(s) 364, 892, 1153, 1350
EarI CTCTTC 4 cut(s) 364, 892, 1153, 1350
Ecl136II GAGCTC 2 cut(s) 73, 168
Eco24I GRGCYC 5 cut(s) 75, 170, 1011, 1045, 1511
Eco47I GGWCC 1 cut(s) 732
Eco53kI GAGCTC 2 cut(s) 73, 168
Eco57I CTGAAG 1 cut(s) 1662
Eco81I CCTNAGG 1 cut(s) 1077
EcoICRI GAGCTC 2 cut(s) 73, 168
EcoO109I RGGNCCY 1 cut(s) 732
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 6 cut(s) 418, 469, 684, 799, 842, 1204
EcoT38I GRGCYC 5 cut(s) 75, 170, 1011, 1045, 1511
FaeI CATG 7 cut(s) 55, 310, 339, 1103, 1339, 1546, 1667
FaqI GGGAC 2 cut(s) 137, 1498
FatI CATG 7 cut(s) 51, 306, 335, 1099, 1335, 1542, 1663
FauI CCCGC 1 cut(s) 205
FokI GGATG 4 cut(s) 426, 1049, 1192, 1619
FriOI GRGCYC 5 cut(s) 75, 170, 1011, 1045, 1511
FspBI CTAG 2 cut(s) 1241, 1479
GlaI GCGC 1 cut(s) 1277
HaeII RGCGCY 1 cut(s) 1279
HaeIII GGCC 2 cut(s) 528, 1641
HapII CCGG 1 cut(s) 185
HgaI GACGC 2 cut(s) 180, 1517
HhaI GCGC 1 cut(s) 1278
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 7 cut(s) 55, 310, 339, 1103, 1339, 1546, 1667
Hin6I GCGC 1 cut(s) 1276
HinP1I GCGC 1 cut(s) 1276
HincII GTYRAC 2 cut(s) 544, 1308
HindII GTYRAC 2 cut(s) 544, 1308
HindIII AAGCTT 2 cut(s) 599, 966
HinfI GANTC 6 cut(s) 155, 590, 764, 1360, 1406, 1645
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 354, 773
Hpy166II GTNNAC 2 cut(s) 544, 1308
Hpy188I TCNGA 5 cut(s) 141, 790, 1069, 1106, 1629
Hpy188III TCNNGA 7 cut(s) 282, 606, 662, 704, 1076, 1193, 1502
Hpy8I GTNNAC 2 cut(s) 544, 1308
HpyAV CCTTC 7 cut(s) 48, 444, 767, 1107, 1428, 1622, 1670
HpyCH4III ACNGT 2 cut(s) 1266, 1312
HpyF3I CTNAG 3 cut(s) 366, 789, 1077
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 7 cut(s) 55, 310, 339, 1103, 1339, 1546, 1667
HspAI GCGC 1 cut(s) 1276
KpnI GGTACC 1 cut(s) 1438
Kzo9I GATC 8 cut(s) 136, 145, 388, 572, 644, 776, 795, 1195
LguI GCTCTTC 1 cut(s) 1350
LmnI GCTCC 6 cut(s) 99, 173, 706, 1087, 1574, 1594
LweI GCATC 2 cut(s) 1227, 1482
MaeI CTAG 2 cut(s) 1241, 1479
MaeIII GTNAC 3 cut(s) 832, 1219, 1548
MalI GATC 8 cut(s) 138, 147, 390, 574, 646, 778, 797, 1197
MboI GATC 8 cut(s) 136, 145, 388, 572, 644, 776, 795, 1195
MboII GAAGA 9 cut(s) 171, 270, 285, 351, 879, 1170, 1181, 1337, 1355
MfeI CAATTG 3 cut(s) 76, 118, 650
MflI RGATCY 3 cut(s) 644, 795, 1195
MhlI GDGCHC 5 cut(s) 75, 170, 1011, 1045, 1511
MlsI TGGCCA 1 cut(s) 1641
MluNI TGGCCA 1 cut(s) 1641
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 1 cut(s) 1641
MroXI GAANNNNTTC 1 cut(s) 1152
MscI TGGCCA 1 cut(s) 1641
MseI TTAA 3 cut(s) 111, 630, 903
MslI CAYNNNNRTG 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 1641
MspA1I CMGCKG 1 cut(s) 989
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 6 cut(s) 420, 471, 686, 801, 844, 1206
MunI CAATTG 3 cut(s) 76, 118, 650
MvaI CCWGG 6 cut(s) 420, 471, 686, 801, 844, 1206
NdeII GATC 8 cut(s) 136, 145, 388, 572, 644, 776, 795, 1195
NlaIII CATG 7 cut(s) 55, 310, 339, 1103, 1339, 1546, 1667
NlaIV GGNNCC 6 cut(s) 35, 453, 936, 1021, 1083, 1436
NmuCI GTSAC 1 cut(s) 832
NspI RCATGY 2 cut(s) 310, 1546
NspV TTCGAA 1 cut(s) 1156
PaeI GCATGC 1 cut(s) 1546
PasI CCCWGGG 1 cut(s) 685
PciI ACATGT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 1350
PdmI GAANNNNTTC 1 cut(s) 1152
PfeI GAWTC 5 cut(s) 590, 764, 1360, 1406, 1645
PflMI CCANNNNNTGG 1 cut(s) 419
PfoI TCCNGGA 2 cut(s) 418, 842
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 732
PscI ACATGT 1 cut(s) 306
PsiI TTATAA 1 cut(s) 1253
Psp124BI GAGCTC 2 cut(s) 75, 170
Psp5II RGGWCCY 1 cut(s) 732
Psp6I CCWGG 6 cut(s) 418, 469, 684, 799, 842, 1204
PspGI CCWGG 6 cut(s) 418, 469, 684, 799, 842, 1204
PspN4I GGNNCC 6 cut(s) 35, 453, 936, 1021, 1083, 1436
PspPI GGNCC 1 cut(s) 732
PspPPI RGGWCCY 1 cut(s) 732
PstNI CAGNNNCTG 3 cut(s) 704, 788, 1450
PsuI RGATCY 3 cut(s) 644, 795, 1195
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 2 cut(s) 1263, 1436
RsaNI GTAC 2 cut(s) 1262, 1435
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 2 cut(s) 75, 170
SapI GCTCTTC 1 cut(s) 1350
SaqAI TTAA 3 cut(s) 111, 630, 903
Sau3AI GATC 8 cut(s) 136, 145, 388, 572, 644, 776, 795, 1195
Sau96I GGNCC 1 cut(s) 732
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 6 cut(s) 420, 471, 686, 801, 844, 1206
SduI GDGCHC 5 cut(s) 75, 170, 1011, 1045, 1511
SfaNI GCATC 2 cut(s) 1227, 1482
SfcI CTRYAG 1 cut(s) 1029
SfuI TTCGAA 1 cut(s) 1156
SinI GGWCC 1 cut(s) 732
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 163, 1584
SmoI CTYRAG 2 cut(s) 163, 1584
SphI GCATGC 1 cut(s) 1546
SsiI CCGC 6 cut(s) 188, 201, 212, 222, 225, 1442
SspMI CTAG 2 cut(s) 1241, 1479
SstI GAGCTC 2 cut(s) 75, 170
StyD4I CCNGG 6 cut(s) 418, 469, 684, 799, 842, 1204
TaaI ACNGT 2 cut(s) 1266, 1312
TaqI TCGA 3 cut(s) 41, 728, 1156
TatI WGTACW 1 cut(s) 1261
TauI GCSGC 5 cut(s) 191, 203, 225, 228, 1444
TfiI GAWTC 5 cut(s) 590, 764, 1360, 1406, 1645
Tru1I TTAA 3 cut(s) 111, 630, 903
Tru9I TTAA 3 cut(s) 111, 630, 903
TscAI CASTG 2 cut(s) 1018, 1239
TseFI GTSAC 1 cut(s) 832
Tsp45I GTSAC 1 cut(s) 832
TspRI CASTG 2 cut(s) 1018, 1239
Van91I CCANNNNNTGG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 732
XapI RAATTY 4 cut(s) 694, 713, 940, 1184
XceI RCATGY 2 cut(s) 310, 1546
XmnI GAANNNNTTC 1 cut(s) 1152
XspI CTAG 2 cut(s) 1241, 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.